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Last change
on this file since 18094 was 17986, checked in by ghughes, 10 years ago |
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batch scripts update
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-
Property svn:executable
set to
*
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File size:
876 bytes
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| Line | |
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| 1 | #!/bin/bash
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| 2 |
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| 3 | if [[ $# < 1 ]]
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| 4 | then
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| 5 | echo ""
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| 6 | echo "FACT.sub_star_mc.sh <input dir> <output dir>"
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| 7 | echo ""
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| 8 | exit
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| 9 | fi
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| 10 |
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| 11 | cd $MARSSYS
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| 12 |
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| 13 | INDIR=$1
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| 14 | OUTDIR=$2
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| 15 |
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| 16 | TEMPFILE="temp.star.file"
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| 17 |
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| 18 | ## Need to edit this TODO
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| 19 | ls $INDIR/cer* | head -n 1 > $TEMPFILE
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| 20 |
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| 21 | while read LINE
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| 22 | do
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| 23 |
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| 24 | INFILE=$LINE
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| 25 |
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| 26 | ## Need to edit this TODO
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| 27 | NUMBER=`echo $LINE | sed s/cer/" "/g | gawk '{print $2}'`
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| 28 |
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| 29 | QSUB=$MARSSYS"/batch/queue/FACT.qsub_star_mc_"$NUMBER".sh"
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| 30 | QSUBERR=$MARSSYS"/batch/queue/FACT.qsub_star_mc_"$NUMBER".err"
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| 31 | QSUBOUT=$MARSSYS"/batch/queue/FACT.qsub_star_mc_"$NUMBER".out"
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| 32 |
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| 33 | sed -e "s|FFFFF|$INFILE|" \
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| 34 | -e "s|DDDDD|$OUTDIR|" $MARSSYS"/batch/FACT.qsub_star_mc.sh" > $QSUB
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| 35 |
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| 36 | chmod +x $QSUB
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| 37 |
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| 38 | ##qsub -q fact_medium -b yes -o $QSUBOUT -e $QSUBERR $QSUB
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| 39 | qsub -q test -b yes -o $QSUBOUT -e $QSUBERR $QSUB
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| 40 | ##qsub -b yes -o $QSUBOUT -e $QSUBERR $QSUB
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| 41 |
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| 42 | done <$TEMPFILE
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| 43 |
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| 44 | rm $TEMPFILE
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