| 1 | In the Mars_McMismatchStudy branch I have created a set of scripts for sending jobs to the ISDC batch systemi (see below for full list).
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| 2 | All of the scripts follow the same style. They are comprised of two files.
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| 3 |
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| 4 | FACT.sub_PROGRAM_TYPE.sh which is exicuatable and the one you run.
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| 5 | FACT.qsub_PROGRAM_TYPE.sh which is the template for the script that runs on the batch machines.
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| 6 |
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| 7 | PROGRAM = star, calisto, ...
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| 8 | TYPE = data or mc
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| 9 |
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| 10 | to find the options on how to run any of the scripts run it with no options:
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| 11 |
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| 12 |
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| 13 | ------
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| 14 | > ./FACT.sub_star_data.sh
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| 15 |
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| 16 | FACT.sub_star_data.sh <runlist>
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| 17 |
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| 18 | <runlist> should be in the form YEAR MONTH DAY eg:
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| 19 | 2013 10 15
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| 20 | ------
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| 21 |
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| 22 | An example run list for star is provided in the form of:
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| 23 | Crab.star
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| 24 |
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| 25 | The sub script crates a job in the queue directory for each night on the list.
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| 26 | Each job then runs over the sequence files for each day.
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| 27 | To find the command and how it is run take a look inside the qsub file.
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| 28 | For example star is run, in the script, as follows:
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| 29 |
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| 30 | root -b -q fact/analysis/star.C\(\"$SEQFILE\",4,2.5,\"$INDIR\",\"$OUTDIR\"\)
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| 31 |
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| 32 | The output all goes to a directory called something like:
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| 33 | OUTDIR=$MARSSYS/OUTPUT/star/$DATE
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| 34 | which be created if it does not exist.
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| 35 |
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| 36 | Things to do:
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| 37 |
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| 38 | The MC chain has not been tested.
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| 39 | The files created by callisto are too large to do a large data set. What might be more
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| 40 | useful for full production in to combine the callisto and star scripts. The callisto
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| 41 | output can be created and removed on the fly.
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| 42 |
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| 43 | Give it a try and feel free to change/edit what doesn't work.
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| 44 |
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| 45 |
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| 46 | Full list:
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| 47 |
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| 48 | Crab.star
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| 49 | Crab.ganymed
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| 50 |
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| 51 | FACT.qsub_call_mc.sh
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| 52 | FACT.qsub_ceres_mc.sh
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| 53 | FACT.qsub_gan_data.sh
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| 54 | FACT.qsub_gan_mc.sh
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| 55 | FACT.qsub_ped_mc.sh
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| 56 | FACT.qsub_star_data.sh
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| 57 | FACT.qsub_star_mc.sh
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| 58 | FACT.sub_call_mc.sh
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| 59 | FACT.sub_ceres_mc.sh
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| 60 | FACT.sub_gan_data.sh
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| 61 | FACT.sub_gan_mc.sh
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| 62 | FACT.sub_ped_mc.sh
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| 63 | FACT.sub_star_data.sh
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| 64 | FACT.sub_star_mc.sh
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| 65 |
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