| 1 | #!/bin/bash
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| 2 |
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| 3 | # option whether to fill all row or only those where information is missing
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| 4 | # $doupdate might be given as environment variable
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| 5 | if [ "$doupdate" = "" ]
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| 6 | then
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| 7 | doupdate="yes" # update all entries (needed when new fields have been added)
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| 8 | doupdate="no" # fill only entries which are not yet existing (default)
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| 9 | fi
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| 10 |
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| 11 | source `dirname $0`/../Sourcefile.sh
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| 12 | printprocesslog "INFO starting $0 with option doupdate="$doupdate
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| 13 |
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| 14 | logfile=$runlogpath"/FillThresholds-"$datetime".log"
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| 15 | date >> $logfile
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| 16 |
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| 17 | # setup to use ftools
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| 18 | source $HEADAS/headas-init.sh
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| 19 |
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| 20 | # check if software is available
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| 21 | if ! ls $factpath/fitsdump >/dev/null 2>&1
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| 22 | then
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| 23 | printprocesslog "ERROR "$factpath"/fitsdump is not available."
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| 24 | finish
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| 25 | fi
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| 26 |
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| 27 |
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| 28 | # get dates
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| 29 | if [ "$certaindate" != "" ]
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| 30 | then
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| 31 | checkstring=`echo $certaindate | grep -E -o '^20[0-9][0-9]\/[01][0-9]\/[0-3][0-9]$'`
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| 32 | if [ "$checkstring" = "" ]
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| 33 | then
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| 34 | echo "Please give the variable certaindate in the correct format (YYYY/MM/DD)"
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| 35 | finish
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| 36 | fi
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| 37 | getdates $certaindate
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| 38 | else
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| 39 | # get all night
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| 40 | #getdates "all"
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| 41 | # get last 6 nights
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| 42 | getdates 6
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| 43 | fi
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| 44 |
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| 45 | printprocesslog "INFO processing the following night(s): "${dates[@]}
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| 46 | echo `date`": processing the following night(s): "${dates[@]} >> $logfile 2>&1
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| 47 |
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| 48 | #echo ${dates[@]}
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| 49 |
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| 50 | cd $mars
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| 51 |
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| 52 | # do filling of aux data
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| 53 | for date in ${dates[@]}
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| 54 | do
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| 55 | auxdir=$auxdata/$date
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| 56 | runnumber=`echo $date | sed -e 's/\///g'`
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| 57 |
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| 58 | # get file numbers from DB
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| 59 | # but only for not-corrupted files
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| 60 | query="SELECT fRunID from RunInfo WHERE fNight="$runnumber" AND fFitsFileErrors=0 "
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| 61 | if [ "$doupdate" = "no" ]
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| 62 | then
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| 63 | query=$query" AND ISNULL(fThresholdMedMean) AND ISNULL(fThresholdMinSet) "
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| 64 | fi
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| 65 | printprocesslog "DEBUG get filenumbers from DB: QUERY: "$query
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| 66 | filenumbers=( `sendquery $query` )
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| 67 | # proceed only if there are files available
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| 68 | if [ ${#filenumbers} -eq 0 ]
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| 69 | then
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| 70 | printprocesslog "INFO No files found in the DB for night "$date
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| 71 | continue
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| 72 | fi
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| 73 |
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| 74 | # check if aux files are available from that night
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| 75 | if ! [ -d $auxdir ]
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| 76 | then
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| 77 | printprocesslog "INFO no data available in "$auxdir
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| 78 | continue
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| 79 | else
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| 80 | printprocesslog "INFO processing files in "$auxdir
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| 81 | fi
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| 82 |
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| 83 | thresholdfile=$auxdir/$runnumber.RATE_CONTROL_THRESHOLD.fits
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| 84 | printprocesslog "INFO processing "$thresholdfile
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| 85 | echo "INFO processing "$thresholdfile >> $logfile 2>&1
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| 86 | if ! [ -e $thresholdfile ]
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| 87 | then
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| 88 | printprocesslog "WARN "$thresholdfile" not found."
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| 89 | continue
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| 90 | else
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| 91 | threshnumerrors=`fverify $thresholdfile 2>/dev/null | grep -o '[0-9][ ]error(s)' | grep -E -o '[0-9]'`
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| 92 | if [ $threshnumerrors -gt 0 ]
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| 93 | then
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| 94 | printprocesslog "WARN for $thresholdfile fverify returned "$threshnumerrors" error(s)."
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| 95 | fi
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| 96 | fi
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| 97 |
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| 98 | thresholdfile2=$auxdir/$runnumber.FTM_CONTROL_STATIC_DATA.fits
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| 99 | #ls $thresholdfile2
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| 100 | if ! [ -e $thresholdfile2 ]
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| 101 | then
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| 102 | printprocesslog "WARN "$thresholdfile2" not found."
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| 103 | continue
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| 104 | else
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| 105 | threshnumerrors2=`fverify $thresholdfile2 2>/dev/null | grep -o '[0-9][ ]error(s)' | grep -E -o '[0-9]'`
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| 106 | if [ $threshnumerrors2 -gt 0 ]
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| 107 | then
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| 108 | printprocesslog "WARN for $thresholdfile2 fverify returned "$threshnumerrors2" error(s)."
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| 109 | fi
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| 110 | fi
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| 111 |
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| 112 | # fill auxiliary information for files
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| 113 | for filenum in ${filenumbers[@]}
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| 114 | do
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| 115 | printprocesslog "INFO processing file number "$runnumber"_"`printf %03d $filenum`
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| 116 | echo `date`": processing file number "$runnumber"_"`printf %03d $filenum` >> $logfile 2>&1
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| 117 | # get information from rawfile
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| 118 | rawfile=$ziprawdata/$date/$runnumber"_"`printf %03d $filenum`.fits.fz
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| 119 | if ! [ -e $rawfile ]
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| 120 | then
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| 121 | printprocesslog "ERROR: "$rawfile" not found."
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| 122 | continue
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| 123 | fi
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| 124 | runtype=`$factpath/fitsdump -h $rawfile 2>/dev/null | grep RUNTYPE | grep -E -o "['][a-z-]+[']" | sed -e "s/'//g"`
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| 125 | mjdrefraw=`$factpath/fitsdump -h $rawfile 2>/dev/null | grep 'MJDREF' | grep -E -o '[0-9]{5}'`
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| 126 | tstarti=`$factpath/fitsdump -h $rawfile 2>/dev/null | grep 'TSTARTI' | grep -E -o '[0-9]{5}'`
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| 127 | tstartf=`$factpath/fitsdump -h $rawfile 2>/dev/null | grep 'TSTARTF' | grep -E -o '0[.][0-9]+'`
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| 128 | tstopi=`$factpath/fitsdump -h $rawfile 2>/dev/null | grep 'TSTOPI' | grep -E -o '[0-9]{5}'`
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| 129 | tstopf=`$factpath/fitsdump -h $rawfile 2>/dev/null | grep 'TSTOPF' | grep -E -o '0[.][0-9]+'`
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| 130 | if [ "$tstarti" == "" ] || [ "$tstopi" == "" ] || [ "$tstartf" == "" ] || [ "$tstopf" == "" ]
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| 131 | then
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| 132 | printprocesslog "WARN: "$rawfile": one of the following keywords is empty or 0: TSTARTI TSTARTF TSTOPI TSTOPF "
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| 133 | continue
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| 134 | fi
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| 135 | # assuming that at least TSTARTI and TSTOPI are consistent
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| 136 | #echo $rawfile
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| 137 | #echo $tstarti
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| 138 | #echo $tstopi
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| 139 | #echo $tstartf
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| 140 | #echo $tstopf
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| 141 | if [ $tstarti -gt 30000 ]
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| 142 | then
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| 143 | tstart=`echo " $tstarti + $tstartf - 40587 " | bc -l`
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| 144 | tstart2=`echo " $tstarti + $tstartf - 40587 - 0.00011574 " | bc -l` # 10 sec
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| 145 | #tstart2=`echo " $tstarti + $tstartf - 40587 - 0.000023148 " | bc -l` # 2 sec
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| 146 | tstop=`echo " $tstopi + $tstopf - 40587 " | bc -l`
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| 147 | else
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| 148 | tstart=`echo " $tstarti + $tstartf " | bc -l`
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| 149 | tstart2=`echo " $tstarti + $tstartf - 0.00011574 " | bc -l` # 10 sec
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| 150 | #tstart2=`echo " $tstarti + $tstartf - 0.000023148 " | bc -l` # 2 sec
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| 151 | tstop=`echo " $tstopi + $tstopf " | bc -l`
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| 152 | fi
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| 153 |
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| 154 | # build query to update runinfo in DB
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| 155 | query="UPDATE RunInfo SET "
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| 156 |
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| 157 | # get information
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| 158 | if [ -e $threshcurrentsfile ] && [ $threshnumerrors -eq 0 ]
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| 159 | then
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| 160 | thresholds1=( `root -q -b -l fact/processing/threshold.C\("\"$thresholdfile2\""\,$tstart\,$tstop\) | grep "result" | grep -E -o '[0-9]+[.]?[0-9]*'` )
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| 161 | #root -q -b -l fact/threshold.C\("\"$thresholdfile2\""\,$tstart\,$tstop\) | grep "result"
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| 162 | #echo ${thresholds1[@]}
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| 163 | if [ "${thresholds1[0]}" == "" ]
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| 164 | then
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| 165 | query=$query"fThresholdMedMean=NULL"
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| 166 | else
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| 167 | query=$query"fThresholdMedMean="${thresholds1[0]}
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| 168 | fi
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| 169 | if [ "${thresholds1[1]}" == "" ]
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| 170 | then
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| 171 | query=$query", fThresholdMedRms=NULL"
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| 172 | else
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| 173 | query=$query", fThresholdMedRms="${thresholds1[1]}
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| 174 | fi
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| 175 | if [ "${thresholds1[2]}" == "" ]
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| 176 | then
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| 177 | query=$query", fThresholdMax=NULL"
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| 178 | else
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| 179 | query=$query", fThresholdMax="${thresholds1[2]}
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| 180 | fi
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| 181 | if [ "${thresholds1[3]}" == "" ]
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| 182 | then
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| 183 | query=$query", fThresholdAvgMean=NULL"
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| 184 | else
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| 185 | query=$query", fThresholdAvgMean="${thresholds1[3]}
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| 186 | fi
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| 187 | else
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| 188 | query=$query" fThresholdMedMean=NULL"
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| 189 | query=$query", fThresholdMedRms=NULL"
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| 190 | query=$query", fThresholdMax=NULL"
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| 191 | query=$query", fThresholdAvgMean=NULL"
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| 192 | fi
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| 193 |
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| 194 | # get information
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| 195 | if [ -e $threshcurrentsfile2 ] && [ $threshnumerrors2 -eq 0 ]
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| 196 | then
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| 197 | thresholds2=( `root -q -b -l fact/processing/lastth.C\("\"$thresholdfile\""\,$tstart\) | grep "result" | grep -E -o '[0-9]+[.]?[0-9]*'` )
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| 198 | #root -q -b -l fact/lastth.C\("\"$thresholdfile\""\,$tstart\) | grep "result"
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| 199 | #echo ${thresholds2[@]}
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| 200 | if [ "${thresholds2[0]}" == "" ]
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| 201 | then
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| 202 | query=$query", fThresholdMinSet=NULL"
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| 203 | else
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| 204 | query=$query", fThresholdMinSet="${thresholds2[0]}
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| 205 | fi
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| 206 | if [ "${thresholds2[1]}" == "" ]
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| 207 | then
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| 208 | query=$query", fThresholdMinTimeDiff=NULL"
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| 209 | else
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| 210 | query=$query", fThresholdMinTimeDiff="${thresholds2[1]}
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| 211 | fi
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| 212 | else
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| 213 | query=$query", fThresholdMinSet=NULL"
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| 214 | query=$query", fThresholdMinTimeDiff=NULL"
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| 215 | fi
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| 216 |
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| 217 | # add where condition
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| 218 | query=$query" WHERE fNight="$runnumber" AND fRunID="$filenum
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| 219 |
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| 220 | #echo $query
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| 221 | # send query to DB
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| 222 | sendquery >/dev/null
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| 223 | done
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| 224 | done
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| 225 |
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| 226 | finish
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| 227 |
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| 228 |
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