| 1 | #!/usr/bin/python
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| 2 | #
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| 3 | # Dominik Neise
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| 4 | # TU Dortmund
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| 5 | #
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| 6 | # example for storing numpy arrays containing FACT analysis results
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| 7 | # to file
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| 8 |
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| 9 | #import this at first, please
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| 10 | from pyfact_rename import RawData
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| 11 |
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| 12 | import os.path
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| 13 | import numpy as np
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| 14 |
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| 15 | from drs_spikes import DRSSpikes
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| 16 | from fir_filter import SlidingAverage
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| 17 | from extractor import GlobalMaxFinder
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| 18 | from cleaners import AmplitudeCleaner
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| 19 |
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| 20 | ##############################################################################
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| 21 | confirm_next_step = False# this is for user interaction
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| 22 |
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| 23 | data_file_name = '/media/daten_platte/FACT/data/20120229_144.fits.gz'
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| 24 | if not os.path.isfile(data_file_name):
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| 25 | print 'not able to find file:', data_file_name
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| 26 | sys.exit(-1)
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| 27 | calib_file_name = '/media/daten_platte/FACT/data/20120229_132.drs.fits.gz'
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| 28 | if not os.path.isfile(calib_file_name ):
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| 29 | print 'not able to find file:', calib_file_name
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| 30 | sys.exit(-1)
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| 31 |
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| 32 | run = RawData(data_file_name, calib_file_name)
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| 33 | despike = DRSSpikes()
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| 34 | smooth = SlidingAverage(8)
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| 35 | extract = GlobalMaxFinder(40,200)
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| 36 | cleaner = AmplitudeCleaner(45, 18)
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| 37 |
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| 38 | areas = []
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| 39 | sizes = []
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| 40 | for data,startcell,tt in run:
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| 41 | # trigger type 4 means 'physics event'
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| 42 | if tt==4:
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| 43 | data = despike(data)
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| 44 | data = smooth(data)
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| 45 | amplitude, time_of_max = extract(data)
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| 46 | survivors = cleaner(amplitude, return_bool_mask=False)
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| 47 |
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| 48 | # this is not python like, should be done in a single line
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| 49 | # adding up the amplitude of all survivors
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| 50 | size = 0
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| 51 | for pixel in survivors:
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| 52 | size += amplitude[pixel]
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| 53 |
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| 54 | area = len(survivors)
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| 55 |
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| 56 | if area > 0:
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| 57 | areas.append( area )
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| 58 | sizes.append( size )
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| 59 |
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| 60 | # This is for ---------- USER INTERACTION -------------------------
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| 61 | if confirm_next_step:
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| 62 | user_input = raw_input("'q'-quit, 'r'-run, anything else goes one step")
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| 63 | number=None
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| 64 | try:
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| 65 | number=int(user_input)
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| 66 | except:
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| 67 | number=None
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| 68 | if user_input.find('q') != -1:
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| 69 | sys.exit(0)
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| 70 | elif user_input.find('r') != -1:
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| 71 | confirm_next_step = False
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| 72 | elif number!=None:
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| 73 | run += number
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| 74 | # ---------------END OF USER INTERACTION -------------------------
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| 75 |
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| 76 | outfname = raw_input("please enter name for outputfile")
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| 77 | np.savez(outfname, Area=areas, Size=sizes)
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