| 1 | #!/usr/bin/python
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| 2 | #
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| 3 | # Werner Lustermann
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| 4 | # ETH Zurich
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| 5 | #
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| 6 | from ctypes import *
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| 7 | import numpy as np
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| 8 | from scipy import signal
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| 9 |
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| 10 | # get the ROOT stuff + my shared libs
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| 11 | from ROOT import gSystem
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| 12 | # fitslib.so is made from fits.h and is used to access the data
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| 13 | gSystem.Load('~/py/fitslib.so')
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| 14 | from ROOT import *
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| 15 |
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| 16 |
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| 17 | class RawData( object ):
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| 18 | """ raw data access and calibration
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| 19 |
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| 20 | - open raw data file and drs calibration file
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| 21 | - performs amplitude calibration
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| 22 | - performs baseline substraction if wanted
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| 23 | - provides all data in an array:
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| 24 | row = number of pixel
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| 25 | col = length of region of interest
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| 26 |
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| 27 | """
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| 28 |
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| 29 | def __init__(self, data_file_name, calib_file_name,
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| 30 | user_action_calib=lambda acal_data, data, blm, tom, gm, scells, nroi: None,
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| 31 | baseline_file_name=''):
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| 32 | """ initialize object
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| 33 |
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| 34 | open data file and calibration data file
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| 35 | get basic information about the data in data_file_name
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| 36 | allocate buffers for data access
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| 37 |
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| 38 | data_file_name : fits or fits.gz file of the data including the path
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| 39 | calib_file_name : fits or fits.gz file containing DRS calibration data
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| 40 | baseline_file_name : npy file containing the baseline values
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| 41 |
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| 42 | """
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| 43 |
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| 44 | self.data_file_name = data_file_name
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| 45 | self.calib_file_name = calib_file_name
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| 46 | self.baseline_file_name = baseline_file_name
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| 47 |
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| 48 | self.user_action_calib = user_action_calib
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| 49 |
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| 50 | # baseline correction: True / False
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| 51 | if len(baseline_file_name) == 0:
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| 52 | self.correct_baseline = False
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| 53 | else:
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| 54 | self.correct_baseline = True
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| 55 |
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| 56 | # access data file
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| 57 | try:
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| 58 | data_file = fits(self.data_file_name)
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| 59 | except IOError:
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| 60 | print 'problem accessing data file: ', data_file_name
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| 61 | raise # stop ! no data
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| 62 | #: data file (fits object)
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| 63 | self.data_file = data_file
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| 64 |
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| 65 | # get basic information about the data file
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| 66 | #: region of interest (number of DRS slices read)
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| 67 | self.nroi = data_file.GetUInt('NROI')
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| 68 | #: number of pixels (should be 1440)
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| 69 | self.npix = data_file.GetUInt('NPIX')
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| 70 | #: number of events in the data run
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| 71 | self.nevents = data_file.GetNumRows()
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| 72 |
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| 73 | # allocate the data memories
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| 74 | self.event_id = c_ulong()
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| 75 | self.trigger_type = c_ushort()
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| 76 | #: 1D array with raw data
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| 77 | self.data = np.zeros( self.npix * self.nroi, np.int16 )
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| 78 | #: slice where drs readout started
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| 79 | self.start_cells = np.zeros( self.npix, np.int16 )
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| 80 | #: time when the FAD was triggered, in some strange units...
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| 81 | self.board_times = np.zeros( 40, np.int32 )
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| 82 |
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| 83 | # set the pointers to the data++
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| 84 | data_file.SetPtrAddress('EventNum', self.event_id)
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| 85 | data_file.SetPtrAddress('TriggerType', self.trigger_type)
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| 86 | data_file.SetPtrAddress('StartCellData', self.start_cells)
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| 87 | data_file.SetPtrAddress('Data', self.data)
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| 88 | data_file.SetPtrAddress('BoardTime', self.board_times)
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| 89 |
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| 90 | # open the calibration file
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| 91 | try:
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| 92 | calib_file = fits(self.calib_file_name)
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| 93 | except IOError:
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| 94 | print 'problem accessing calibration file: ', calib_file_name
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| 95 | raise
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| 96 | #: drs calibration file
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| 97 | self.calib_file = calib_file
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| 98 |
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| 99 | baseline_mean = calib_file.GetN('BaselineMean')
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| 100 | gain_mean = calib_file.GetN('GainMean')
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| 101 | trigger_offset_mean = calib_file.GetN('TriggerOffsetMean')
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| 102 |
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| 103 | self.blm = np.zeros(baseline_mean, np.float32)
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| 104 | self.gm = np.zeros(gain_mean, np.float32)
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| 105 | self.tom = np.zeros(trigger_offset_mean, np.float32)
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| 106 |
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| 107 | self.Nblm = baseline_mean / self.npix
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| 108 | self.Ngm = gain_mean / self.npix
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| 109 | self.Ntom = trigger_offset_mean / self.npix
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| 110 |
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| 111 | calib_file.SetPtrAddress('BaselineMean', self.blm)
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| 112 | calib_file.SetPtrAddress('GainMean', self.gm)
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| 113 | calib_file.SetPtrAddress('TriggerOffsetMean', self.tom)
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| 114 | calib_file.GetRow(0)
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| 115 |
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| 116 | self.v_bsl = np.zeros(self.npix) # array of baseline values (all ZERO)
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| 117 | self.data_saverage_out = None
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| 118 | self.pulse_time_of_maximum = None
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| 119 | self.pulse_amplitude = None
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| 120 |
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| 121 | def __iter__(self):
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| 122 | """ iterator """
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| 123 | return self
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| 124 |
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| 125 | def __add__(self, jump_over):
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| 126 | self.data_file.GetRow(jump_over)
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| 127 | return self
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| 128 |
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| 129 | def next(self):
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| 130 | """ used by __iter__ """
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| 131 |
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| 132 | if self.data_file.GetNextRow() == False:
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| 133 | raise StopIteration
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| 134 | else:
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| 135 | self.calibrate_drs_amplitude()
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| 136 |
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| 137 | #print 'nevents = ', self.nevents, 'event_id = ', self.event_id.value
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| 138 |
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| 139 | return self.acal_data, self.start_cells, self.trigger_type.value
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| 140 |
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| 141 | def next_event(self):
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| 142 | """ load the next event from disk and calibrate it
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| 143 |
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| 144 | """
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| 145 |
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| 146 | self.data_file.GetNextRow()
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| 147 | self.calibrate_drs_amplitude()
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| 148 |
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| 149 | def calibrate_drs_amplitude(self):
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| 150 | """ perform the drs amplitude calibration of the event data
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| 151 |
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| 152 | """
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| 153 |
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| 154 | to_mV = 2000./4096.
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| 155 | #: 2D array with amplitude calibrated dat in mV
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| 156 | acal_data = self.data * to_mV # convert ADC counts to mV
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| 157 |
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| 158 | # make 2D arrays: row = pixel, col = drs_slice
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| 159 | acal_data = np.reshape(acal_data, (self.npix, self.nroi) )
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| 160 | blm = np.reshape(self.blm, (self.npix, self.Nblm) )
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| 161 | tom = np.reshape(self.tom, (self.npix, self.Ntom) )
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| 162 | gm = np.reshape(self.gm, (self.npix, self.Ngm) )
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| 163 |
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| 164 | for pixel in range( self.npix ):
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| 165 | # rotate the pixel baseline mean to the Data startCell
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| 166 | blm_pixel = np.roll( blm[pixel,:], -self.start_cells[pixel] )
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| 167 | tom_pixel = np.roll( tom[pixel,:], -self.start_cells[pixel] )
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| 168 | gm_pixel = np.roll( gm[pixel,:], -self.start_cells[pixel] )
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| 169 | acal_data[pixel,:] -= blm_pixel[0:self.nroi]
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| 170 | acal_data[pixel,:] -= tom_pixel[0:self.nroi]
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| 171 | acal_data[pixel,:] /= gm_pixel[0:self.nroi]
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| 172 |
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| 173 | self.acal_data = acal_data * 1907.35
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| 174 |
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| 175 | #print 'blm _pyfact', blm[0,0:20]
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| 176 | #t = np.roll( blm[0,:], -self.start_cells[0] )
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| 177 | #print 'blm _pyfact', t[0:20]
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| 178 | #print 'start_pyfact: ', self.start_cells[0]
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| 179 | #print 'acal _pyfact: ', self.acal_data[0,0:10]
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| 180 | #t = np.roll( gm[0,:], -self.start_cells[0] )
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| 181 | #print 'gm _pyfact: ', t[0:10]
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| 182 | self.user_action_calib( self.acal_data,
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| 183 | np.reshape(self.data, (self.npix, self.nroi) ), blm, tom, gm, self.start_cells, self.nroi)
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| 184 |
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| 185 |
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| 186 | def baseline_read_values(self, file, bsl_hist='bsl_sum/hplt_mean'):
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| 187 | """
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| 188 |
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| 189 | open ROOT file with baseline histogram and read baseline values
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| 190 | file name of the root file
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| 191 | bsl_hist path to the histogram containing the basline values
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| 192 |
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| 193 | """
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| 194 |
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| 195 | try:
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| 196 | f = TFile(file)
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| 197 | except:
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| 198 | print 'Baseline data file could not be read: ', file
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| 199 | return
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| 200 |
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| 201 | h = f.Get(bsl_hist)
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| 202 |
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| 203 | for i in range(self.npix):
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| 204 | self.v_bsl[i] = h.GetBinContent(i+1)
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| 205 |
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| 206 | f.Close()
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| 207 |
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| 208 | def baseline_correct(self):
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| 209 | """ subtract baseline from the data
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| 210 |
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| 211 | """
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| 212 |
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| 213 | for pixel in range(self.npix):
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| 214 | self.acal_data[pixel,:] -= self.v_bsl[pixel]
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| 215 |
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| 216 | def info(self):
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| 217 | """ print run information
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| 218 |
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| 219 | """
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| 220 |
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| 221 | print 'data file: ', data_file_name
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| 222 | print 'calib file: ', calib_file_name
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| 223 | print 'calibration file'
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| 224 | print 'N baseline_mean: ', self.Nblm
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| 225 | print 'N gain mean: ', self.Ngm
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| 226 | print 'N TriggeroffsetMean: ', self.Ntom
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| 227 |
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| 228 | # -----------------------------------------------------------------------------
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| 229 | class fnames( object ):
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| 230 | """ organize file names of a FACT data run
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| 231 |
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| 232 | """
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| 233 |
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| 234 | def __init__(self, specifier = ['012', '023', '2011', '11', '24'],
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| 235 | rpath = '/scratch_nfs/res/bsl/',
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| 236 | zipped = True):
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| 237 | """
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| 238 | specifier : list of strings defined as:
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| 239 | [ 'DRS calibration file', 'Data file', 'YYYY', 'MM', 'DD']
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| 240 |
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| 241 | rpath : directory path for the results; YYYYMMDD will be appended to rpath
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| 242 | zipped : use zipped (True) or unzipped (Data)
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| 243 |
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| 244 | """
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| 245 |
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| 246 | self.specifier = specifier
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| 247 | self.rpath = rpath
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| 248 | self.zipped = zipped
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| 249 |
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| 250 | self.make( self.specifier, self.rpath, self.zipped )
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| 251 |
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| 252 |
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| 253 | def make( self, specifier, rpath, zipped ):
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| 254 | """ create (make) the filenames
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| 255 |
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| 256 | names : dictionary of filenames, tags { 'data', 'drscal', 'results' }
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| 257 | data : name of the data file
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| 258 | drscal : name of the drs calibration file
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| 259 | results : radikal of file name(s) for results (to be completed by suffixes)
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| 260 | """
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| 261 |
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| 262 | self.specifier = specifier
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| 263 |
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| 264 | if zipped:
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| 265 | dpath = '/data00/fact-construction/raw/'
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| 266 | ext = '.fits.gz'
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| 267 | else:
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| 268 | dpath = '/data03/fact-construction/raw/'
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| 269 | ext = '.fits'
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| 270 |
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| 271 | year = specifier[2]
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| 272 | month = specifier[3]
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| 273 | day = specifier[4]
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| 274 |
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| 275 | yyyymmdd = year + month + day
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| 276 | dfile = specifier[1]
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| 277 | cfile = specifier[0]
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| 278 |
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| 279 | rpath = rpath + yyyymmdd + '/'
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| 280 | self.rpath = rpath
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| 281 | self.names = {}
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| 282 |
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| 283 | tmp = dpath + year + '/' + month + '/' + day + '/' + yyyymmdd + '_'
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| 284 | self.names['data'] = tmp + dfile + ext
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| 285 | self.names['drscal'] = tmp + cfile + '.drs' + ext
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| 286 | self.names['results'] = rpath + yyyymmdd + '_' + dfile + '_' + cfile
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| 287 |
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| 288 | self.data = self.names['data']
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| 289 | self.drscal = self.names['drscal']
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| 290 | self.results = self.names['results']
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| 291 |
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| 292 | def info( self ):
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| 293 | """ print complete filenames
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| 294 |
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| 295 | """
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| 296 |
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| 297 | print 'file names:'
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| 298 | print 'data: ', self.names['data']
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| 299 | print 'drs-cal: ', self.names['drscal']
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| 300 | print 'results: ', self.names['results']
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| 301 |
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| 302 | # end of class definition: fnames( object )
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| 303 |
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| 304 | def _test_iter():
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| 305 | """ test for function __iter__ """
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| 306 |
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| 307 | # data_file_name = '/data00/fact-construction/raw/2011/11/24/20111124_111.fits.gz'
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| 308 | # calib_file_name = data_file_name =
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| 309 | data_file_name = '/home/luster/win7/FACT/data/raw/20120114/20120114_028.fits.gz'
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| 310 | calib_file_name = '/home/luster/win7/FACT/data/raw/20120114/20120114_022.drs.fits.gz'
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| 311 | run = RawData( data_file_name, calib_file_name )
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| 312 |
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| 313 | for data, scell, tt in run:
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| 314 | print 'data[0,0] = ', data[0,0], "start_cell[0] =", scell[0], "trigger type = ", tt
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| 315 |
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| 316 |
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| 317 | if __name__ == '__main__':
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| 318 | """ tests """
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| 319 |
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| 320 | _test_iter()
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