#!/usr/bin/python -tt

from pyfact import RawData
from drs_spikes import DRSSpikes
import sys
import numpy as np
from ctypes import *
import os
import os.path as path
from ROOT import TFile, TCanvas, TH2F, TTree, TStyle, TObject
import time

dfn = sys.argv[1]
cfn = sys.argv[2]
run = RawData( dfn, cfn) 


file_base_name = path.splitext(path.basename(dfn))[0]
root_filename = '/home_nfs/isdc/neise/' + file_base_name + '_' + time.strftime('%Y%m%d_%H%M%S') +'_spikeana.root'

rootfile = TFile(root_filename, "RECREATE")

fbn = path.splitext(file_base_name)[0]
fbn = fbn[0:8]+fbn[9:12]


baum = TTree('spiketree', 'spike ana tree')

# prepare some vars for the tree
chid               =  c_int(0)
startcell          =  c_int(0)
number_of_singles  =  c_int(0)
position_of_spikes_in_logical_pipeline   =  np.zeros(100, np.int32)
position_of_spikes_in_physical_pipeline  =  np.zeros(100, np.int32)
time_to_previous   =  c_int(0)
event_id           =  c_int(0)
file_id            =  c_long(long(fbn))

baum.Branch('file',file_id,'file/L')
baum.Branch('event',event_id,'event/I')
baum.Branch('chid',chid,'chid/I')
baum.Branch('sc',startcell,'sc/I')
baum.Branch('n',number_of_singles,'n/I')
baum.Branch('logpos',position_of_spikes_in_logical_pipeline,'logpos[n]/I')
baum.Branch('physpos',position_of_spikes_in_physical_pipeline,'physpos[n]/I')
baum.Branch('time',time_to_previous,'time/I')


def spikecallback(candidates, singles, doubles, data, ind):
    if len(singles) >0 :
        for s in singles:
            s = np.unravel_index(s, data.shape)
            hs.Fill( s[0], s[1])
    if len(doubles) >0 :
        for d in doubles:
            d = np.unravel_index(d, data.shape)
            hd.Fill( d[0], d[1])
            
            
    
despike = DRSSpikes(user_action = spikecallback)

def mars_spikes( data ):
    """
    should search for spikes, just as it is implemented in 
    mcore/DrsCalib.h in DrsCalib::RemoveSpikes
    static void RemoveSpikes(float *vec, uint32_t roi)
    {
        if (roi<4)
            return;

        for (size_t ch=0; ch<1440; ch++)
        {
            float *p = vec + ch*roi;

            for (size_t i=1; i<roi-2; i++)
            {
                if (p[i]-p[i-1]>25 && p[i]-p[i+1]>25)
                {
                    p[i] = (p[i-1]+p[i+1])/2;
                }

                if (p[i]-p[i-1]>22 && fabs(p[i]-p[i+1])<4 && p[i+1]-p[i+2]>22)
                {
                    p[i] = (p[i-1]+p[i+2])/2;
                    p[i+1] = p[i];
                }
            }
        }
    }    
        
    """

    #: list, conaining the (chid,slice) tuple of the single spike positions
    singles = []
    #: list, conaining the (chid,slice) tuple of the 1st double spike positions
    doubles = []
    
    for chid, pdata in enumerate(data):
        single_cand = np.where( np.diff(pdata[:-1]) > 25)[0]
        for cand in single_cand:
            if -np.diff(pdata[1:])[cand] > 25:
                singles.append( (chid, cand) )
        
        double_cand = np.where( np.diff(pdata[:-1]) > 22 )[0]
        for cand in double_cand:
            if cand+1 < len(np.diff(pdata[1:])):
                if abs(-np.diff(pdata[1:])[cand])<4 and -np.diff(pdata[1:])[cand+1] > 22:
                    doubles.append( (chid, cand) )
                
    
    return singles, doubles        





event = run.next()
board_time = event['board_times'].copy()

for event in run:
    event_id.value = event['event_id']


    data = event['data']
    singles, doubles = mars_spikes(data)
    sc = event['start_cells']
    bt_old = board_time.copy()
    board_time = event['board_times'].copy()
  #  print fbn, event['event_id'] 

    ss = []
    for i in range(1440):
        ss.append([])
    for s in singles:
        ss[s[0]].append(s[1])
        
    for pixel_id,pixel in enumerate(ss):
        if len(pixel) >0 :
            chid.value  = pixel_id
            startcell.value = sc[ chid.value ]
            number_of_singles.value = len(pixel)
            time_to_previous.value = board_time[pixel_id/36]-bt_old[pixel_id/36]
            for num,s in enumerate(pixel):
                log = s
                phys  = (startcell.value+log)%1024
                position_of_spikes_in_logical_pipeline[num] = log
                position_of_spikes_in_physical_pipeline[num] = phys
            baum.Fill()


baum.Write()

rootfile.Close()