1 | /* ======================================================================== *\
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2 | !
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3 | ! *
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4 | ! * This file is part of MARS, the MAGIC Analysis and Reconstruction
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5 | ! * Software. It is distributed to you in the hope that it can be a useful
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6 | ! * and timesaving tool in analysing Data of imaging Cerenkov telescopes.
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7 | ! * It is distributed WITHOUT ANY WARRANTY.
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8 | ! *
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9 | ! * Permission to use, copy, modify and distribute this software and its
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10 | ! * documentation for any purpose is hereby granted without fee,
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11 | ! * provided that the above copyright notice appear in all copies and
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12 | ! * that both that copyright notice and this permission notice appear
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13 | ! * in supporting documentation. It is provided "as is" without express
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14 | ! * or implied warranty.
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15 | ! *
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16 | !
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17 | !
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18 | ! Author(s): Markus Gaug, 04/2004 <mailto:markus@ifae.es>
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19 | !
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20 | ! Copyright: MAGIC Software Development, 2000-2005
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21 | !
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22 | !
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23 | \* ======================================================================== */
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24 |
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25 | /////////////////////////////////////////////////////////////////////////////
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26 | //
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27 | // MJCalibTest
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28 | //
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29 | // If the flag SetDataCheckDisplay() is set, only the most important distributions
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30 | // are displayed.
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31 | // Otherwise, (default: SetNormalDisplay()), a good selection of plots is given
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32 | //
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33 | /////////////////////////////////////////////////////////////////////////////
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34 | #include "MJCalibTest.h"
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35 |
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36 | #include <TFile.h>
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37 | #include <TStyle.h>
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38 | #include <TCanvas.h>
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39 | #include <TSystem.h>
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40 |
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41 | #include "MLog.h"
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42 | #include "MLogManip.h"
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43 |
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44 | #include "MParList.h"
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45 | #include "MTaskList.h"
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46 | #include "MTaskEnv.h"
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47 | #include "MEvtLoop.h"
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48 |
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49 | #include "MHCamera.h"
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50 |
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51 | #include "MSignalCam.h"
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52 | #include "MPedestalCam.h"
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53 | #include "MPedPhotCam.h"
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54 | #include "MBadPixelsCam.h"
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55 | #include "MBadPixelsTreat.h"
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56 | #include "MBadPixelsCalc.h"
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57 | #include "MBadPixelsMerge.h"
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58 | #include "MCalibrationChargeCam.h"
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59 | #include "MCalibrationRelTimeCam.h"
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60 | #include "MCalibrationQECam.h"
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61 | #include "MCalibrationTestCam.h"
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62 | #include "MCalibrationTestCalc.h"
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63 | #include "MHCamEvent.h"
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64 | #include "MHCalibrationTestCam.h"
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65 | #include "MHCalibrationTestTimeCam.h"
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66 | #include "MHCalibrationPix.h"
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67 |
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68 | #include "MReadMarsFile.h"
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69 | #include "MRawFileRead.h"
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70 | #include "MGeomApply.h"
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71 | #include "MGeomCam.h"
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72 | #include "MExtractTimeAndChargeSpline.h"
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73 | #include "MExtractor.h"
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74 | #include "MExtractTime.h"
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75 | //#include "MExtractTimeFastSpline.h"
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76 | #include "MFCosmics.h"
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77 | #include "MContinue.h"
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78 | #include "MFillH.h"
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79 | #include "MCalibrateData.h"
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80 | #include "MCalibrateRelTimes.h"
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81 |
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82 | #include "MTriggerPattern.h"
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83 | #include "MTriggerPatternDecode.h"
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84 | #include "MFTriggerPattern.h"
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85 |
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86 | #include "MStatusDisplay.h"
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87 |
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88 | ClassImp(MJCalibTest);
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89 |
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90 | using namespace std;
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91 |
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92 | // --------------------------------------------------------------------------
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93 | //
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94 | // Default constructor.
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95 | //
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96 | // Sets fUseCosmicsFilter to kTRUE, fExtractor to NULL, fTimeExtractor to NULL
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97 | // fDisplay to kNormalDisplay
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98 | //
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99 | MJCalibTest::MJCalibTest(const char *name, const char *title)
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100 | : fUseCosmicsFilter(kTRUE), fExtractor(NULL), fTimeExtractor(NULL),
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101 | fDisplayType(kNormalDisplay), fGeometry("MGeomCamMagic")
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102 | {
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103 | fName = name ? name : "MJCalibTest";
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104 | fTitle = title ? title : "Tool to extract, calibrate and test signals from a file";
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105 | }
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106 |
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107 |
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108 | void MJCalibTest::DisplayResult(MParList &plist)
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109 | {
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110 | if (!fDisplay)
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111 | return;
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112 |
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113 | //
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114 | // Get container from list
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115 | //
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116 | MGeomCam &geomcam = *(MGeomCam*) plist.FindObject("MGeomCam");
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117 | MHCalibrationTestCam &testcam = *(MHCalibrationTestCam*)plist.FindObject("MHCalibrationTestCam");
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118 |
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119 | // Create histograms to display
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120 | MHCamera disp1 (geomcam, "Test;PhotoElectrons", "Mean equiv. phes");
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121 | MHCamera disp2 (geomcam, "Test;SigmaPhes", "Sigma equiv.phes");
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122 | MHCamera disp3 (geomcam, "Test;PhesPerArea", "Equiv. Phes per Area");
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123 | MHCamera disp4 (geomcam, "Test;SigmaPhotPerArea", "Sigma equiv. Phes per Area");
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124 | MHCamera disp5 (geomcam, "Test;Phot", "Calibrated Phes from Fit");
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125 | MHCamera disp6 (geomcam, "Test;PhotPerArea", "Calibrated Phes per Area from Fit");
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126 | MHCamera disp7 (geomcam, "Test;NotInterpolate", "Not interpolated pixels");
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127 | MHCamera disp8 (geomcam, "Test;DeviatingPhots", "Deviating Number Phes");
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128 | MHCamera disp9 (geomcam, "Test;Arr.Times", "Mean of calibrated Arr.Times");
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129 | MHCamera disp10(geomcam, "Test;SigmaArr.Times", "Sigma of calibrated Arr.Times");
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130 |
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131 | // Fitted charge means and sigmas
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132 | disp1.SetCamContent(testcam, 0);
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133 | disp1.SetCamError( testcam, 1);
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134 | disp2.SetCamContent(testcam, 2);
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135 | disp2.SetCamError( testcam, 3);
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136 | disp3.SetCamContent(testcam, 7);
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137 | disp3.SetCamError( testcam, 8);
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138 | disp4.SetCamContent(testcam, 9);
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139 | disp4.SetCamError( testcam, 10);
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140 |
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141 | disp5.SetCamContent(fTestCam, 0);
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142 | disp5.SetCamError( fTestCam, 1);
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143 | disp6.SetCamContent(fTestCam, 2);
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144 | disp6.SetCamError( fTestCam, 3);
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145 | disp7.SetCamError( fTestCam, 4);
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146 |
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147 | disp8.SetCamError( fBadPixels, 22);
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148 |
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149 | disp9.SetCamContent(fTestTimeCam, 0);
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150 | disp9.SetCamError( fTestTimeCam, 1);
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151 | disp10.SetCamContent(fTestTimeCam, 2);
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152 | disp10.SetCamError( fTestTimeCam, 3);
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153 |
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154 |
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155 | disp1.SetYTitle("Phes");
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156 | disp2.SetYTitle("\\sigma_{phe}");
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157 | disp3.SetYTitle("Phes per area [mm^{-2}]");
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158 | disp4.SetYTitle("\\sigma_{phe} per area [mm^{-2}]");
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159 |
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160 | disp5.SetYTitle("Phes");
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161 | disp6.SetYTitle("Phes per area [mm^{-2}]");
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162 | disp7.SetYTitle("[1]");
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163 | disp8.SetYTitle("[1]");
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164 |
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165 | disp9.SetYTitle("Mean Arr.Times [FADC units]");
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166 | disp10.SetYTitle("\\sigma_{t} [FADC units]");
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167 |
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168 | TCanvas &c = fDisplay->AddTab("TestPhes");
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169 | c.Divide(4,4);
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170 |
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171 | disp1.CamDraw(c, 1, 4, 2, 1);
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172 | disp2.CamDraw(c, 2, 4, 2, 1);
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173 | disp3.CamDraw(c, 3, 4, 1, 1);
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174 | disp4.CamDraw(c, 4, 4, 2, 1);
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175 |
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176 | /*
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177 |
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178 | TCanvas &c2 = fDisplay->AddTab("TestResult");
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179 | c2.Divide(2,4);
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180 |
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181 | disp5.CamDraw(c2, 1, 2, 2, 1);
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182 | disp6.CamDraw(c2, 2, 2, 2, 1);
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183 |
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184 | */
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185 |
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186 | TCanvas &c3 = fDisplay->AddTab("TestDefects");
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187 | c3.Divide(2,2);
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188 |
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189 | disp7.CamDraw(c3, 1, 2, 0);
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190 | disp8.CamDraw(c3, 2, 2, 0);
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191 |
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192 | //
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193 | // Display times
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194 | //
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195 | TCanvas &c4 = fDisplay->AddTab("TestTimes");
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196 | c4.Divide(2,4);
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197 |
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198 | disp9.CamDraw(c4, 1, 2, 5, 1);
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199 | disp10.CamDraw(c4, 2, 2, 5, 1);
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200 |
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201 | return;
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202 |
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203 | }
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204 |
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205 | // --------------------------------------------------------------------------
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206 | //
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207 | // Retrieve the output file written by WriteResult()
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208 | //
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209 | const char* MJCalibTest::GetOutputFile() const
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210 | {
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211 | return Form("%s/calib%08d.root", fPathOut.Data(), fSequence.GetSequence());
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212 | }
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213 |
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214 | Bool_t MJCalibTest::ReadCalibration(TObjArray &l, MBadPixelsCam &cam, MExtractor* &ext1, MExtractor* &ext2, TString &geom) const
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215 | {
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216 |
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217 | const TString fname = GetOutputFile();
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218 |
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219 | *fLog << inf << "Reading from file: " << fname << endl;
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220 |
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221 | TFile file(fname, "READ");
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222 | if (!file.IsOpen())
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223 | {
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224 | *fLog << err << dbginf << "ERROR - Could not open file " << fname << endl;
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225 | return kFALSE;
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226 | }
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227 |
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228 | TObject *o = file.Get("ExtractSignal");
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229 | if (o && !o->InheritsFrom(MExtractor::Class()))
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230 | {
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231 | *fLog << err << dbginf << "ERROR - ExtractSignal read from " << fname << " doesn't inherit from MExtractor!" << endl;
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232 | return kFALSE;
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233 | }
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234 | ext1 = o ? (MExtractor*)o->Clone() : NULL;
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235 |
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236 | o = file.Get("ExtractTime");
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237 | if (o && !o->InheritsFrom(MExtractor::Class()))
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238 | {
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239 | *fLog << err << dbginf << "ERROR - ExtractTime read from " << fname << " doesn't inherit from MExtractor!" << endl;
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240 | return kFALSE;
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241 | }
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242 | ext2 = o ? (MExtractor*)o->Clone() : NULL;
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243 | if (!ext1 && !ext2)
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244 | {
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245 | *fLog << err << dbginf << "ERROR - Neither ExtractSignal nor ExrtractTime found in " << fname << "!" << endl;
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246 | return kFALSE;
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247 | }
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248 |
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249 | o = file.Get("MGeomCam");
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250 | if (o && !o->InheritsFrom(MGeomCam::Class()))
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251 | {
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252 | *fLog << err << dbginf << "ERROR - MGeomCam read from " << fname << " doesn't inherit from MGeomCam!" << endl;
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253 | return kFALSE;
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254 | }
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255 | geom = o ? o->ClassName() : "";
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256 |
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257 | TObjArray cont(l);
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258 | cont.Add(&cam);
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259 | return ReadContainer(cont);
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260 | }
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261 |
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262 | Bool_t MJCalibTest::Process(MPedestalCam &pedcam)
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263 | {
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264 | if (!fSequence.IsValid())
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265 | {
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266 | *fLog << err << "ERROR - Sequence invalid..." << endl;
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267 | return kFALSE;
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268 | }
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269 |
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270 | *fLog << inf;
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271 | fLog->Separator(GetDescriptor());
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272 | *fLog << "Calculate calibration test from Sequence #";
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273 | *fLog << fSequence.GetSequence() << endl << endl;
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274 |
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275 | CheckEnv();
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276 |
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277 | *fLog << inf;
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278 | fLog->Separator(GetDescriptor());
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279 |
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280 | *fLog << "Calibrate Calibration data from ";
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281 | *fLog << "Sequence #" << fSequence.GetSequence() << endl;
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282 | *fLog << endl;
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283 |
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284 | MDirIter iter;
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285 |
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286 | if (fSequence.IsValid())
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287 | {
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288 | if (fSequence.SetupCalRuns(iter, 0, !fSequence.IsMonteCarlo())<=0)
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289 | return kFALSE;
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290 | }
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291 |
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292 | MCalibrationChargeCam calcam;
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293 | MCalibrationQECam qecam;
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294 | MCalibrationRelTimeCam tmcam;
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295 | MBadPixelsCam badpix;
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296 |
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297 | TObjArray calibcont;
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298 | calibcont.Add(&calcam);
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299 | calibcont.Add(&qecam);
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300 | calibcont.Add(&tmcam);
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301 |
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302 | MExtractor *extractor1=0;
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303 | MExtractor *extractor2=0;
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304 | TString geom;
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305 |
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306 | if (!ReadCalibration(calibcont, badpix, extractor1, extractor2, geom))
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307 | {
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308 | *fLog << err << "Could not read calibration constants " << endl;
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309 | return kFALSE;
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310 | }
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311 |
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312 | *fLog << all;
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313 | if (extractor1)
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314 | {
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315 | *fLog << underline << "Signal Extractor found in calibration file" << endl;
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316 | extractor1->Print();
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317 | *fLog << endl;
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318 | }
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319 | else
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320 | *fLog << inf << "No Signal Extractor: ExtractSignal in file." << endl;
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321 |
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322 | if (extractor2)
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323 | {
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324 | *fLog << underline << "Time Extractor found in calibration file" << endl;
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325 | extractor2->Print();
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326 | *fLog << endl;
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327 | }
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328 | else
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329 | *fLog << inf << "No Time Extractor: ExtractTime in file." << endl;
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330 |
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331 | if (!geom.IsNull())
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332 | *fLog << inf << "Camera geometry found in file: " << geom << endl;
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333 | else
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334 | *fLog << inf << "No Camera geometry found using default <MGeomCamMagic>" << endl;
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335 |
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336 | if (fExtractor)
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337 | extractor1 = fExtractor;
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338 | if (fTimeExtractor)
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339 | extractor2 = fTimeExtractor;
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340 |
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341 | // Setup Lists
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342 | MParList plist;
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343 | plist.AddToList(this); // take care of fDisplay!
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344 | plist.AddToList(&fTestCam);
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345 | plist.AddToList(&fTestTimeCam);
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346 | plist.AddToList(&badpix);
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347 | plist.AddToList(&pedcam);
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348 | plist.AddToList(&calcam);
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349 | plist.AddToList(&qecam);
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350 | plist.AddToList(&tmcam);
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351 |
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352 | MSignalCam cerphot;
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353 | MPedPhotCam pedphot;
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354 | MHCalibrationTestCam testcam;
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355 |
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356 | plist.AddToList(&cerphot);
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357 | plist.AddToList(&pedphot);
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358 | plist.AddToList(&testcam);
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359 |
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360 | pedcam.SetName("MPedestalFundamental");
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361 |
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362 | MTaskList tlist;
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363 | plist.AddToList(&tlist);
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364 |
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365 | // Setup Task-lists
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366 | MRawFileRead rawread(NULL);
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367 | MReadMarsFile read("Events");
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368 | read.DisableAutoScheme();
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369 |
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370 | if (!fSequence.IsMonteCarlo())
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371 | rawread.AddFiles(iter);
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372 | else
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373 | static_cast<MRead&>(read).AddFiles(iter);
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374 |
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375 | // Check for interleaved events
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376 | // This will make that for data with version less than 5, where trigger
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377 | // patterns were not yet correct, all the events in the file will be
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378 | // processed. For those data there are no interleaved calibration events,
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379 | // so it makes no sense to run this test on a _D_ file. So we assume it
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380 | // will be a _C_ file, and accept all events.
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381 | MTriggerPatternDecode decode;
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382 | MFTriggerPattern fcalib;
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383 | fcalib.DenyCalibration();
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384 | fcalib.SetDefault(kFALSE);
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385 | MContinue conttp(&fcalib, "ContTrigPattern");
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386 |
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387 | MGeomApply apply; // Only necessary to craete geometry
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388 | if (!geom.IsNull())
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389 | apply.SetGeometry(geom);
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390 | MBadPixelsMerge merge(&badpix);
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391 |
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392 | // MExtractTimeAndChargeSlidingWindow extrsw;
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393 | // MExtractTimeFastSpline extime;
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394 |
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395 | MExtractTimeAndChargeSpline spline;
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396 |
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397 | MTaskEnv taskenv1("ExtractSignal");
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398 | MTaskEnv taskenv2("ExtractTime");
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399 |
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400 | if (extractor1)
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401 | taskenv1.SetDefault(extractor1);
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402 |
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403 | if (extractor2)
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404 | taskenv2.SetDefault(fTimeExtractor);
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405 | else if (!(extractor1->InheritsFrom("MExtractTimeAndCharge")))
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406 | {
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407 | spline.SetWindowSize(8,8);
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408 | taskenv2.SetDefault(&spline);
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409 | *fLog << warn << GetDescriptor()
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410 | << ": No extractor has been chosen, take default MExtractTimeAndChargeSlidingWindow " << endl;
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411 | }
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412 |
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413 |
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414 | MCalibrateData photcalc;
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415 | photcalc.AddPedestal("Fundamental");
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416 | photcalc.SetCalibrationMode(MCalibrateData::kFfactor);
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417 | photcalc.SetPedestalFlag(MCalibrateData::kEvent);
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418 | photcalc.SetSignalType(MCalibrateData::kPhe);
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419 |
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420 | MCalibrateRelTimes caltimes;
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421 | MBadPixelsCalc badcalc;
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422 | MBadPixelsTreat badtreat;
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423 | badtreat.SetProcessTimes(kFALSE);
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424 |
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425 | badcalc.SetNamePedPhotCam("MPedPhotFundamental");
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426 | badtreat.SetUseInterpolation();
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427 | badtreat.AddNamePedPhotCam("MPedPhotFundamental");
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428 |
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429 | MCalibrationTestCalc testcalc;
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430 |
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431 | MHCamEvent evt0(0,"Signal", "Un-Calibrated Signal;;S [FADC cnts]" );
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432 | MHCamEvent evt1(0,"CalSig", "Cal. and Interp. Sig. by Pixel Size Ratio;;S [phe]");
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433 | MHCamEvent evt2(6,"Times" , "Arrival Time;;T [slice]");
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434 |
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435 | MFillH fill0(&evt0, "MExtractedSignalCam", "FillUncalibrated");
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436 | MFillH fill1(&evt1, "MSignalCam", "FillCalibrated");
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437 | MFillH fill2(&evt2, "MSignalCam", "FillTimes");
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438 |
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439 | MFillH fillcam("MHCalibrationTestCam", "MSignalCam" ,"FillTest");
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440 | MFillH filltme("MHCalibrationTestTimeCam", "MSignalCam", "FillTestTime");
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441 | fillcam.SetBit(MFillH::kDoNotDisplay);
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442 | filltme.SetBit(MFillH::kDoNotDisplay);
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443 |
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444 | MFCosmics cosmics;
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445 | cosmics.SetNamePedestalCam("MPedestalFundamental");
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446 | MContinue contcos(&cosmics,"ContCosmics");
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447 |
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448 | tlist.AddToList(&read);
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449 | tlist.AddToList(&decode);
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450 | tlist.AddToList(&apply);
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451 | tlist.AddToList(&merge);
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452 | // tlist.AddToList(&conttp);
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453 | tlist.AddToList(&taskenv1);
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454 | if (!extractor1->InheritsFrom("MExtractTimeAndCharge"))
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455 | tlist.AddToList(&taskenv2);
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456 |
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457 | tlist.AddToList(&contcos);
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458 | tlist.AddToList(&fill0);
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459 | tlist.AddToList(&photcalc);
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460 | tlist.AddToList(&caltimes);
|
---|
461 | tlist.AddToList(&badcalc);
|
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462 | tlist.AddToList(&badtreat);
|
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463 | tlist.AddToList(&fill1);
|
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464 | tlist.AddToList(&fill2);
|
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465 | tlist.AddToList(&fillcam);
|
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466 | tlist.AddToList(&filltme);
|
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467 | tlist.AddToList(&testcalc);
|
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468 |
|
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469 | // Create and setup the eventloop
|
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470 | MEvtLoop evtloop(fName);
|
---|
471 | evtloop.SetParList(&plist);
|
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472 | evtloop.SetDisplay(fDisplay);
|
---|
473 | evtloop.SetLogStream(fLog);
|
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474 |
|
---|
475 | // Execute first analysis
|
---|
476 | if (!evtloop.Eventloop())
|
---|
477 | {
|
---|
478 | *fLog << err << GetDescriptor() << ": Failed." << endl;
|
---|
479 | return kFALSE;
|
---|
480 | }
|
---|
481 |
|
---|
482 | if (fIsPixelCheck)
|
---|
483 | {
|
---|
484 | MHCalibrationTestCam *hcam = (MHCalibrationTestCam*)plist.FindObject("MHCalibrationTestCam");
|
---|
485 | MHCalibrationPix &pix1 = (*hcam)[fCheckedPixId];
|
---|
486 | pix1.DrawClone("");
|
---|
487 |
|
---|
488 | MHCalibrationTestTimeCam *hccam = (MHCalibrationTestTimeCam*)plist.FindObject("MHCalibrationTestTimeCam");
|
---|
489 | MHCalibrationPix &pix11 = (*hccam)[fCheckedPixId];
|
---|
490 | pix11.DrawClone("");
|
---|
491 | }
|
---|
492 |
|
---|
493 | DisplayResult(plist);
|
---|
494 |
|
---|
495 | if (!WriteResult())
|
---|
496 | return kFALSE;
|
---|
497 |
|
---|
498 | *fLog << inf << GetDescriptor() << ": Done." << endl;
|
---|
499 |
|
---|
500 | return kTRUE;
|
---|
501 | }
|
---|
502 |
|
---|
503 | Bool_t MJCalibTest::WriteResult()
|
---|
504 | {
|
---|
505 |
|
---|
506 | if (fPathOut.IsNull())
|
---|
507 | return kTRUE;
|
---|
508 |
|
---|
509 | const TString oname(GetOutputFile());
|
---|
510 |
|
---|
511 | *fLog << inf << "Writing to file: " << oname << endl;
|
---|
512 |
|
---|
513 | TFile file(oname, "UPDATE");
|
---|
514 |
|
---|
515 | if (fDisplay && fDisplay->Write()<=0)
|
---|
516 | {
|
---|
517 | *fLog << err << "Unable to write MStatusDisplay to " << oname << endl;
|
---|
518 | return kFALSE;
|
---|
519 | }
|
---|
520 |
|
---|
521 | if (fTestCam.Write()<=0)
|
---|
522 | {
|
---|
523 | *fLog << err << "Unable to write MCalibrationTestCam to " << oname << endl;
|
---|
524 | return kFALSE;
|
---|
525 | }
|
---|
526 |
|
---|
527 | if (fTestTimeCam.Write()<=0)
|
---|
528 | {
|
---|
529 | *fLog << err << "Unable to write MCalibrationTestCam to " << oname << endl;
|
---|
530 | return kFALSE;
|
---|
531 | }
|
---|
532 |
|
---|
533 | return kTRUE;
|
---|
534 |
|
---|
535 | }
|
---|