| 1 | /* ======================================================================== *\
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| 2 | !
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| 3 | ! *
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| 4 | ! * This file is part of MARS, the MAGIC Analysis and Reconstruction
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| 5 | ! * Software. It is distributed to you in the hope that it can be a useful
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| 6 | ! * and timesaving tool in analysing Data of imaging Cerenkov telescopes.
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| 7 | ! * It is distributed WITHOUT ANY WARRANTY.
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| 8 | ! *
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| 9 | ! * Permission to use, copy, modify and distribute this software and its
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| 10 | ! * documentation for any purpose is hereby granted without fee,
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| 11 | ! * provided that the above copyright notice appear in all copies and
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| 12 | ! * that both that copyright notice and this permission notice appear
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| 13 | ! * in supporting documentation. It is provided "as is" without express
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| 14 | ! * or implied warranty.
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| 15 | ! *
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| 16 | !
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| 17 | !
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| 18 | ! Author(s): Markus Gaug, 11/2003 <mailto:markus@ifae.es>
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| 19 | !
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| 20 | ! Copyright: MAGIC Software Development, 2000-2004
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| 21 | !
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| 22 | !
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| 23 | \* ======================================================================== */
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| 24 | /////////////////////////////////////////////////////////////////////////////
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| 25 | //
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| 26 | // calibration.C
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| 27 | //
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| 28 | // Needs as arguments the run number of a calibration file ("*_C_*.root") and
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| 29 | // the run number of the corresponding pedestal file ("*_P_*.root").
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| 30 | //
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| 31 | // The TString inpath has to be set correctly.
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| 32 | //
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| 33 | // The macro searches for the pulser colour which corresponds to the calibration
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| 34 | // run number. If the run number is smaller than 20000, pulser colour "CT1"
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| 35 | // is assumed, otherwise, it searches for the strings "green", "blue", "uv" or
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| 36 | // "ct1" in the filenames. If no colour or multiple colours are found, the
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| 37 | // execution is aborted.
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| 38 | //
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| 39 | // The container MBadPixelsCam is created and followed during the execution of the
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| 40 | // rest of the macro.
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| 41 | //
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| 42 | // A first loop over the pedestal file is performed using the class MJPedestal
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| 43 | //
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| 44 | // The container MCalibrationQECam is created and followed during the execution of the
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| 45 | // rest of the macro.
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| 46 | //
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| 47 | // A loop over the calibration files is performed using the class MJCalibration.
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| 48 | // The results are displayed using the MJCalibration::SetNormalDisplay() facility,
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| 49 | // but other displays can easily be uncommented.
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| 50 | // The call to MJCalibration skips the relative time calibration, which can be
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| 51 | // uncommented as well.
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| 52 | //
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| 53 | // Last, a third loop is performed over the calibration file again in order to
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| 54 | // "calibrate" it and test the resulting outcome.
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| 55 | //
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| 56 | /////////////////////////////////////////////////////////////////////////////
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| 57 | #include "MJPedestal.h"
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| 58 | #include "MJCalibration.h"
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| 59 | #include "MJExtractSignal.h"
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| 60 | #include "MJExtractCalibTest.h"
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| 61 | #include "MExtractFixedWindowPeakSearch.h"
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| 62 | #include "MExtractSlidingWindow.h"
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| 63 | #include "MExtractFixedWindow.h"
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| 64 | #include "MExtractFixedWindowSpline.h"
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| 65 | #include "MExtractAmplitudeSpline.h"
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| 66 | #include "MExtractTimeHighestIntegral.h"
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| 67 | #include "MExtractTimeFastSpline.h"
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| 68 | #include "MRunIter.h"
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| 69 | #include "MStatusDisplay.h"
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| 70 | #include "MCalibrationQECam.h"
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| 71 | #include "MHCalibrationTestCam.h"
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| 72 | #include "MHCalibrationTestPix.h"
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| 73 | #include "MBadPixelsCam.h"
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| 74 | #include "MArgs.h"
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| 75 | #include "MArray.h"
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| 76 | #include "MLog.h"
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| 77 | #include "MParContainer.h"
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| 78 |
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| 79 | #include "TStyle.h"
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| 80 | #include "TObject.h"
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| 81 | #include "TObjectTable.h"
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| 82 | #include "TSystem.h"
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| 83 |
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| 84 | #include <fstream>
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| 85 |
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| 86 | using namespace std;
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| 87 |
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| 88 | static TString outpath = "./";
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| 89 | static TString inpath = "/home/rootdata/Calib/2004_05_24/";
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| 90 | static TString badfile = "";
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| 91 | //
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| 92 | // the default pedestal run for the calibration
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| 93 | //
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| 94 | static const Int_t pedrun = 26569;
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| 95 | //
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| 96 | // the default start calibration run
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| 97 | //
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| 98 | static const Int_t calrun1 = 26568;
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| 99 | //
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| 100 | // the default last calibration run (if 0, only one run is taken, otherwise consecutive runs
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| 101 | // between calrun1 and calrun2)
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| 102 | //
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| 103 | static const Int_t calrun2 = 0;
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| 104 | //
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| 105 | // A switch to output debugging information about Objects use
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| 106 | //
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| 107 | static Bool_t debug = kFALSE;
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| 108 | //
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| 109 | // A switch to use the Blind Pixel
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| 110 | //
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| 111 | static Bool_t blindpix = kTRUE;
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| 112 | //
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| 113 | // A switch to use the PIN Diode
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| 114 | //
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| 115 | static Bool_t pindiode = kFALSE;
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| 116 | //
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| 117 | // Tell if you want to calibrate times:
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| 118 | //
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| 119 | static Bool_t useTimes = kTRUE;
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| 120 | //
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| 121 | // Tell if you want to use the display:
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| 122 | //
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| 123 | static Bool_t useDisplay = kTRUE;
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| 124 | //
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| 125 | // Tell if you want to test the result afterwards
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| 126 | //
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| 127 | static Bool_t useTest = kTRUE;
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| 128 | //
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| 129 | Int_t calibration(const Int_t prun=pedrun,
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| 130 | const Int_t crun1=calrun1, const Int_t crun2=calrun2)
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| 131 | {
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| 132 |
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| 133 | if (debug)
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| 134 | TObject::SetObjectStat(kTRUE);
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| 135 |
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| 136 | //
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| 137 | // Choose the signal Extractor:
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| 138 | //
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| 139 | // MExtractFixedWindowPeakSearch extractor;
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| 140 | // MExtractSlidingWindow extractor;
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| 141 | MExtractFixedWindowSpline extractor;
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| 142 | // MExtractAmplitudeSpline extractor;
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| 143 | // MExtractTimeAndChargeSpline extractor;
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| 144 | //
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| 145 | // Set Ranges or Windows
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| 146 | //
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| 147 | extractor.SetRange(1,14,2,13);
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| 148 | // extractor.SetWindows(8,8);
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| 149 |
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| 150 | //
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| 151 | // Choose the arrival time Extractor:
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| 152 | //
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| 153 | // MExtractTimeHighestIntegral timeext;
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| 154 | MExtractTimeFastSpline timeext;
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| 155 | //
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| 156 | // Set Ranges or Windows
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| 157 | //
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| 158 | timeext.SetRange(0,7,3,8);
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| 159 |
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| 160 | MRunIter pruns;
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| 161 | MRunIter cruns;
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| 162 |
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| 163 | pruns.AddRun(prun,inpath);
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| 164 |
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| 165 | if (crun2==0)
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| 166 | cruns.AddRun(crun1,inpath);
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| 167 | else
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| 168 | cruns.AddRuns(crun1,crun2,inpath);
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| 169 |
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| 170 | gStyle->SetOptStat(1111);
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| 171 | gStyle->SetOptFit();
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| 172 | gStyle->SetTitleSize(0.1,"u");
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| 173 | gStyle->SetLineWidth(1);
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| 174 |
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| 175 | MStatusDisplay *display = NULL;
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| 176 |
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| 177 | if (useDisplay)
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| 178 | {
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| 179 | display = new MStatusDisplay;
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| 180 | display->SetUpdateTime(3000);
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| 181 | display->Resize(850,700);
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| 182 | }
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| 183 |
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| 184 | /************************************/
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| 185 | /* FIRST LOOP: PEDESTAL COMPUTATION */
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| 186 | /************************************/
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| 187 |
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| 188 | MCalibrationQECam qecam;
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| 189 | MBadPixelsCam badcam;
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| 190 | //
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| 191 | // If you want to exclude pixels from the beginning, read
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| 192 | // an ascii-file with the corr. pixel numbers (see MBadPixelsCam)
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| 193 | //
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| 194 | if (!badfile.IsNull())
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| 195 | {
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| 196 | ifstream f(badfile.Data());
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| 197 | badcam.AsciiRead(f);
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| 198 | f.close();
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| 199 | }
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| 200 |
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| 201 | MJPedestal pedloop;
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| 202 | pedloop.SetExtractor(&extractor);
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| 203 | pedloop.SetInput(&pruns);
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| 204 | pedloop.SetOutputPath(outpath.Data());
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| 205 | if (useDisplay)
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| 206 | pedloop.SetDisplay(display);
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| 207 | pedloop.SetBadPixels(badcam);
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| 208 |
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| 209 | if (!pedloop.Process())
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| 210 | return 1;
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| 211 |
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| 212 | /****************************************/
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| 213 | /* SECOND LOOP: CALIBRATION COMPUTATION */
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| 214 | /****************************************/
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| 215 |
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| 216 | MJCalibration calloop;
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| 217 |
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| 218 | if (debug)
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| 219 | calloop.SetDebug();
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| 220 | //
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| 221 | // If you want to run the data-check on RAW DATA!!!, choose:
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| 222 | // calloop.SetDataCheck();
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| 223 | //
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| 224 | // If you want to see the data-check plots only, choose:
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| 225 | calloop.SetDataCheckDisplay();
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| 226 | //
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| 227 | // For everything, you have ever dreamed of, choose:
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| 228 | // calloop.SetFullDisplay();
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| 229 |
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| 230 | //
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| 231 | // If you want to calibrate the times as well, choose:
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| 232 | //
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| 233 | calloop.SetRelTimeCalibration(useTimes);
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| 234 | calloop.SetExtractor(&extractor);
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| 235 | calloop.SetTimeExtractor(&timeext);
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| 236 | calloop.SetInput(&cruns);
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| 237 | calloop.SetOutputPath(outpath.Data());
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| 238 | if (useDisplay)
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| 239 | calloop.SetDisplay(display);
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| 240 | calloop.SetUseBlindPixel(blindpix);
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| 241 | calloop.SetUsePINDiode(pindiode);
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| 242 | calloop.SetQECam(qecam);
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| 243 | calloop.SetBadPixels(pedloop.GetBadPixels());
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| 244 |
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| 245 | if (!calloop.Process(pedloop.GetPedestalCam()))
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| 246 | return 2;
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| 247 |
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| 248 | //
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| 249 | // The next lines are the use the Print() function and have
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| 250 | // all the results as ascii-tables:
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| 251 | //
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| 252 | if (debug)
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| 253 | {
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| 254 | MCalibrationChargeCam &chargecam = calloop.GetCalibrationCam();
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| 255 | MCalibrationQECam &nqecam = calloop.GetQECam();
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| 256 | MBadPixelsCam &badbad = calloop.GetBadPixels();
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| 257 | chargecam.Print();
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| 258 | nqecam.Print();
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| 259 | badbad.Print();
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| 260 | }
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| 261 |
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| 262 | gLog << endl;
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| 263 | gLog << "Mean number of photons from pulser Inner pixels (F-Factor Method): "
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| 264 | << calloop.GetCalibrationCam().GetNumPhotonsFFactorMethod()
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| 265 | << " +- " << calloop.GetCalibrationCam().GetNumPhotonsFFactorMethodErr() << endl;
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| 266 | gLog << endl;
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| 267 |
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| 268 | /********************************************************************/
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| 269 | /* THIRD LOOP: APPLY CALIBRATION TO THE CALIBRATION FILES FOR TESTS */
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| 270 | /********************************************************************/
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| 271 |
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| 272 | if (useTest)
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| 273 | {
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| 274 |
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| 275 | MJExtractCalibTest testloop;
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| 276 |
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| 277 | testloop.SetExtractor(&extractor);
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| 278 | testloop.SetTimeExtractor(&timeext);
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| 279 | testloop.SetInput(&cruns);
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| 280 | testloop.SetOutputPath(outpath);
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| 281 | if (useDisplay)
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| 282 | testloop.SetDisplay(display);
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| 283 | testloop.SetBadPixels(calloop.GetBadPixels());
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| 284 |
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| 285 | if (!testloop.ProcessD(pedloop.GetPedestalCam(),calloop.GetCalibrationCam(),calloop.GetQECam()))
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| 286 | return 3;
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| 287 |
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| 288 | if (useTimes)
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| 289 | if (!testloop.ProcessT(pedloop.GetPedestalCam(),calloop.GetRelTimeCam()))
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| 290 | return 4;
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| 291 |
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| 292 | gLog << endl;
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| 293 | gLog << "Mean equiv. number of photons from cascades per mm^2 Inner pixels: "
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| 294 | << testloop.GetTestCam().GetMeanMeanPhotPerArea(0)
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| 295 | << " +- " << testloop.GetTestCam().GetRmsMeanPhotPerArea(0) << endl;
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| 296 | gLog << "Sigma equiv. number of photons from cascades per mm^2 Inner pixels: "
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| 297 | << testloop.GetTestCam().GetMeanSigmaPhotPerArea(0)
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| 298 | << " +- " << testloop.GetTestCam().GetRmsSigmaPhotPerArea(0) << endl;
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| 299 |
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| 300 | gLog << endl;
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| 301 | gLog << "Mean equiv. number of photons from cascades per mm^2 Outer pixels: "
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| 302 | << testloop.GetTestCam().GetMeanMeanPhotPerArea(1)
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| 303 | << " +- " << testloop.GetTestCam().GetRmsMeanPhotPerArea(1) << endl;
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| 304 | gLog << "Sigma equiv. number of photons from cascades per mm^2 Outer pixels: "
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| 305 | << testloop.GetTestCam().GetMeanSigmaPhotPerArea(1)
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| 306 | << " +- " << testloop.GetTestCam().GetRmsSigmaPhotPerArea(1) << endl;
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| 307 | gLog << endl;
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| 308 |
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| 309 | }
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| 310 |
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| 311 | /********************************************************************/
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| 312 | /* FOURTH LOOP: APPLY CALIBRATION TO THE PEDESTAL FILES */
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| 313 | /********************************************************************/
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| 314 |
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| 315 | MJExtractSignal pedphotloop;
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| 316 |
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| 317 | pedphotloop.SetExtractor(&extractor);
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| 318 | pedphotloop.SetTimeExtractor(&timeext);
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| 319 | pedphotloop.SetInput(&pruns);
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| 320 | pedphotloop.SetOutputPath(outpath);
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| 321 | if (useDisplay)
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| 322 | pedphotloop.SetDisplay(display);
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| 323 | pedphotloop.SetBadPixels(calloop.GetBadPixels());
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| 324 |
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| 325 | if (!pedphotloop.ProcessP(pedloop.GetPedestalCam(),calloop.GetCalibrationCam(),calloop.GetQECam()))
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| 326 | return 5;
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| 327 |
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| 328 |
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| 329 | if (debug)
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| 330 | TObject::SetObjectStat(kFALSE);
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| 331 |
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| 332 | //
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| 333 | // Debugging at the end:
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| 334 | //
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| 335 | if (debug)
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| 336 | gObjectTable->Print();
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| 337 |
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| 338 | //
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| 339 | // List of useful containers:
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| 340 | //
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| 341 | /*
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| 342 | MPedestalCam &pedcam = pedloop.GetPedestalCam();
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| 343 | MCalibrationChargeCam &chargecam = calloop.GetCalibrationCam();
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| 344 | MCalibrationQECam &qecam = calloop.GetCalibrationCam();
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| 345 | MBadPixelsCam &badcam = calloop.GetBadPixels();
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| 346 | MHCalibrationTestCam &testcam = testloop.GetTestCam();
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| 347 | MHCalibrationTestTimeCam &testtime = testloop.GetTestTimeCam();
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| 348 | */
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| 349 |
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| 350 | //
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| 351 | // List of interesting plots:
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| 352 | //
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| 353 | /*
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| 354 | testcam[200].DrawClone("fourierevents");
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| 355 | testcam.GetAverageHiGainArea(0).DrawClone();
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| 356 | testcam.GetAverageLoGainArea(0).DrawClone();
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| 357 | testcam.GetAverageHiGainArea(1).DrawClone();
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| 358 | testcam.GetAverageLoGainArea(1).DrawClone();
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| 359 |
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| 360 | testcam.GetAverageHiGainSector(1).DrawClone();
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| 361 | testcam.GetAverageLoGainSector(1).DrawClone();
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| 362 | testcam.GetAverageHiGainSector(2).DrawClone();
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| 363 | testcam.GetAverageLoGainSector(2).DrawClone();
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| 364 | testcam.GetAverageHiGainSector(3).DrawClone();
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| 365 | testcam.GetAverageLoGainSector(3).DrawClone();
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| 366 | testcam.GetAverageHiGainSector(4).DrawClone();
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| 367 | testcam.GetAverageLoGainSector(4).DrawClone();
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| 368 | testcam.GetAverageHiGainSector(5).DrawClone();
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| 369 | testcam.GetAverageLoGainSector(5).DrawClone();
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| 370 | testcam.GetAverageHiGainSector(6).DrawClone();
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| 371 | testcam.GetAverageLoGainSector(6).DrawClone();
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| 372 | */
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| 373 |
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| 374 | return 0;
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| 375 |
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| 376 | }
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| 377 |
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| 378 | static void Usage()
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| 379 | {
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| 380 | gLog << endl;
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| 381 | gLog << "Usage:" << endl;
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| 382 | gLog << endl;
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| 383 | gLog << " calibration [ped.run nr.] [first cal.run nr.] [last cal.run nr.]" << endl ;
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| 384 | gLog << endl;
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| 385 | gLog << " ped.run.nr: Run number of the pedestal file." << endl;
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| 386 | gLog << " first cal.run nr.: Run number of the first calibration file." << endl;
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| 387 | gLog << " last cal.run nr.: Run number of the last calibration file." << endl;
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| 388 | gLog << endl;
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| 389 | gLog << "All calibration runs between (first cal.run nr.) and (last cal.run nr.) will be used" << endl;
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| 390 | gLog << "If last.cal.run.nr is 0 (default), only one calibration run is taken" << endl;
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| 391 | gLog << endl;
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| 392 | gLog << "Additional Options: " << endl;
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| 393 | gLog << " --inpath=# Find the data in inpath" << endl;
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| 394 | gLog << " --outpath=# Write the output containers to outpath" << endl;
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| 395 | gLog << " --badfile=# Use the file # to exclude pixels from the beginning" << endl;
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| 396 | gLog << " --debug Use the TObjectTable for debugging " << endl;
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| 397 | gLog << " and write out the pixels as ascii tables" << endl;
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| 398 | gLog << " --useTimes Calibrate the relative arrival times" << endl;
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| 399 | gLog << " --useTest Use the class MJExtractCalibTest to test the calibration on itself" << endl;
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| 400 | gLog << " --skipBlindPix Skip the blind pixel calibration" << endl;
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| 401 | gLog << " --skipPINDiode Skip the PIN Diode calibration" << endl;
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| 402 | }
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| 403 |
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| 404 |
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| 405 | int main(int argc, char **argv)
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| 406 | {
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| 407 | //
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| 408 | // Evaluate arguments
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| 409 | //
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| 410 | MArgs arg(argc, argv);
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| 411 |
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| 412 | if (arg.HasOnly("-?") || arg.HasOnly("-h") || arg.HasOnly("--help"))
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| 413 | {
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| 414 | Usage();
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| 415 | return -1;
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| 416 | }
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| 417 |
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| 418 | debug = arg.HasOnlyAndRemove("--debug") || arg.HasOnlyAndRemove("-d");
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| 419 | useTimes = arg.HasOnlyAndRemove("--useTimes") || arg.HasOnlyAndRemove("-t");
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| 420 | useTest = arg.HasOnlyAndRemove("--useTest") || arg.HasOnlyAndRemove("-e");
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| 421 | blindpix = !(arg.HasOnlyAndRemove("--skipBlindPix"));
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| 422 | pindiode = !(arg.HasOnlyAndRemove("--skipPINDiode"));
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| 423 |
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| 424 | if (arg.HasOption("--inpath="))
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| 425 | inpath = arg.GetStringAndRemove("--inpath=");
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| 426 |
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| 427 | if (arg.HasOption("--outpath="))
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| 428 | outpath = arg.GetStringAndRemove("--outpath=");
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| 429 |
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| 430 | if (arg.HasOption("--badfile="))
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| 431 | badfile = arg.GetStringAndRemove("--badfile=");
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| 432 |
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| 433 | if (gSystem->AccessPathName(badfile,kFileExists))
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| 434 | {
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| 435 | gLog << "WARNING: the bad pixels file '" << badfile.Data() << "' doesn't exist." << endl;
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| 436 | badfile = "";
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| 437 | }
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| 438 |
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| 439 | // check for the right usage of the program
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| 440 | //
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| 441 | if (arg.GetNumArguments()>4)
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| 442 | {
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| 443 | Usage();
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| 444 | return -1;
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| 445 | }
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| 446 |
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| 447 | //
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|---|
| 448 | // Initialize Non-GUI (batch) mode
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|---|
| 449 | //
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|---|
| 450 | gROOT->SetBatch();
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|---|
| 451 |
|
|---|
| 452 | //
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|---|
| 453 | // Switch off the display
|
|---|
| 454 | //
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|---|
| 455 | useDisplay = kFALSE;
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|---|
| 456 |
|
|---|
| 457 |
|
|---|
| 458 | //
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|---|
| 459 | // check for the arguments
|
|---|
| 460 | //
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|---|
| 461 | Int_t pedr = 0;
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|---|
| 462 | Int_t calr1 = 0;
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|---|
| 463 | Int_t calr2 = 0;
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|---|
| 464 |
|
|---|
| 465 | const Int_t nargs = arg.GetNumArguments();
|
|---|
| 466 |
|
|---|
| 467 | if (nargs>=3)
|
|---|
| 468 | {
|
|---|
| 469 | pedr = arg.GetArgumentInt(0);
|
|---|
| 470 | calr1 = arg.GetArgumentInt(1);
|
|---|
| 471 | calr2 = arg.GetArgumentInt(2);
|
|---|
| 472 | return calibration(pedr,calr1,calr2);
|
|---|
| 473 | }
|
|---|
| 474 |
|
|---|
| 475 | if (nargs>=2)
|
|---|
| 476 | {
|
|---|
| 477 | pedr = arg.GetArgumentInt(0);
|
|---|
| 478 | calr1 = arg.GetArgumentInt(1);
|
|---|
| 479 | return calibration(pedr,calr1);
|
|---|
| 480 | }
|
|---|
| 481 |
|
|---|
| 482 | if (nargs>=1)
|
|---|
| 483 | {
|
|---|
| 484 | pedr = arg.GetArgumentInt(0);
|
|---|
| 485 | gLog << "PEDR: " << pedr << endl;
|
|---|
| 486 | return calibration(pedr);
|
|---|
| 487 | }
|
|---|
| 488 |
|
|---|
| 489 | return calibration();
|
|---|
| 490 | }
|
|---|
