| 1 | /* ======================================================================== *\
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| 2 | !
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| 3 | ! *
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| 4 | ! * This file is part of MARS, the MAGIC Analysis and Reconstruction
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| 5 | ! * Software. It is distributed to you in the hope that it can be a useful
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| 6 | ! * and timesaving tool in analysing Data of imaging Cerenkov telescopes.
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| 7 | ! * It is distributed WITHOUT ANY WARRANTY.
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| 8 | ! *
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| 9 | ! * Permission to use, copy, modify and distribute this software and its
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| 10 | ! * documentation for any purpose is hereby granted without fee,
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| 11 | ! * provided that the above copyright notice appear in all copies and
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| 12 | ! * that both that copyright notice and this permission notice appear
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| 13 | ! * in supporting documentation. It is provided "as is" without express
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| 14 | ! * or implied warranty.
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| 15 | ! *
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| 16 | !
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| 17 | !
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| 18 | ! Author(s): Thomas Bretz, 1/2004 <mailto:tbretz@astro.uni-wuerzburg.de>
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| 19 | !
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| 20 | ! Copyright: MAGIC Software Development, 2000-2004
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| 21 | !
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| 22 | !
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| 23 | \* ======================================================================== */
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| 24 |
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| 25 | /////////////////////////////////////////////////////////////////////////////
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| 26 | //
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| 27 | // MJCalibrateSignal
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| 28 | //
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| 29 | // This class is reading the output written by callisto. It calibrates
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| 30 | // signal and time.
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| 31 | //
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| 32 | // The signal and time extractors are read from the callisto-output. In
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| 33 | // pricipal you could overwrite these default using the resource file,
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| 34 | // but this is NOT recommended!
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| 35 | //
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| 36 | /////////////////////////////////////////////////////////////////////////////
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| 37 | #include "MJCalibrateSignal.h"
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| 38 |
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| 39 | #include <TEnv.h>
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| 40 | #include <TFile.h>
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| 41 |
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| 42 | #include "MLog.h"
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| 43 | #include "MLogManip.h"
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| 44 |
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| 45 | #include "MDirIter.h"
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| 46 | #include "MParList.h"
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| 47 | #include "MTaskList.h"
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| 48 | #include "MEvtLoop.h"
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| 49 |
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| 50 | #include "MStatusDisplay.h"
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| 51 |
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| 52 | #include "MGeomCam.h"
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| 53 | #include "MHCamEvent.h"
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| 54 | #include "MPedestalCam.h"
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| 55 | #include "MBadPixelsCam.h"
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| 56 |
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| 57 | #include "MCalibrationChargePINDiode.h"
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| 58 |
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| 59 | #include "MCalibrationQECam.h"
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| 60 | #include "MCalibrationBlindCam.h"
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| 61 | #include "MCalibrationChargeCam.h"
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| 62 | #include "MCalibrationRelTimeCam.h"
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| 63 | /*
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| 64 | #include "MCalibrationIntensityQECam.h"
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| 65 | #include "MCalibrationIntensityBlindCam.h"
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| 66 | #include "MCalibrationIntensityChargeCam.h"
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| 67 | #include "MCalibrationIntensityRelTimeCam.h"
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| 68 | */
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| 69 | #include "MReadReports.h"
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| 70 | #include "MReadMarsFile.h"
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| 71 | #include "MRawFileRead.h"
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| 72 | #include "MGeomApply.h"
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| 73 | #include "MMcPedestalCopy.h"
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| 74 | #include "MPointingPosCalc.h"
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| 75 | #include "MPedCalcFromLoGain.h"
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| 76 | #include "MExtractor.h"
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| 77 | #include "MTaskEnv.h"
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| 78 | #include "MCalibrateData.h"
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| 79 | #include "MCalibrateRelTimes.h"
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| 80 | #include "MBadPixelsMerge.h"
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| 81 | #include "MBadPixelsCalc.h"
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| 82 | #include "MBadPixelsTreat.h"
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| 83 | #include "MFillH.h"
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| 84 | #include "MWriteRootFile.h"
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| 85 |
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| 86 | ClassImp(MJCalibrateSignal);
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| 87 |
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| 88 | using namespace std;
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| 89 |
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| 90 | // --------------------------------------------------------------------------
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| 91 | //
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| 92 | // Default constructor.
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| 93 | //
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| 94 | // Sets fRuns to 0, fExtractor to NULL, fDataCheck to kFALSE
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| 95 | //
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| 96 | MJCalibrateSignal::MJCalibrateSignal(const char *name, const char *title)
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| 97 | {
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| 98 | fName = name ? name : "MJCalibrateSignal";
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| 99 | fTitle = title ? title : "Tool to calibrate data";
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| 100 | }
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| 101 |
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| 102 | Bool_t MJCalibrateSignal::WriteResult()
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| 103 | {
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| 104 | if (fPathOut.IsNull())
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| 105 | {
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| 106 | *fLog << inf << "No output path specified via SetPathOut - no output written." << endl;
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| 107 | return kTRUE;
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| 108 | }
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| 109 |
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| 110 | const TString oname = Form("%s/signal%06d.root", (const char*)fPathOut, fSequence.GetSequence());
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| 111 |
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| 112 | *fLog << inf << "Writing to file: " << oname << endl;
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| 113 |
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| 114 | TFile file(oname, "RECREATE");
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| 115 |
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| 116 | *fLog << inf << " - MStatusDisplay..." << flush;
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| 117 | if (fDisplay && fDisplay->Write()<=0)
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| 118 | {
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| 119 | *fLog << err << "Unable to write MStatusDisplay to " << oname << endl;
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| 120 | return kFALSE;
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| 121 | }
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| 122 | *fLog << inf << "ok." << endl;
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| 123 |
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| 124 | return kTRUE;
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| 125 | }
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| 126 |
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| 127 | Bool_t MJCalibrateSignal::ReadCalibration(TObjArray &l, MBadPixelsCam &cam, MTask* &ext1, MTask* &ext2, TString &geom) const
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| 128 | {
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| 129 | const TString fname = Form("%s/calib%06d.root", fPathIn.Data(), fSequence.GetSequence());
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| 130 |
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| 131 | *fLog << inf << "Reading from file: " << fname << endl;
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| 132 |
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| 133 | TFile file(fname, "READ");
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| 134 | if (!file.IsOpen())
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| 135 | {
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| 136 | *fLog << err << dbginf << "ERROR - Could not open file " << fname << endl;
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| 137 | return kFALSE;
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| 138 | }
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| 139 |
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| 140 | TObject *o = file.Get("ExtractSignal");
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| 141 | if (o && !o->InheritsFrom(MExtractor::Class()))
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| 142 | {
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| 143 | *fLog << err << dbginf << "ERROR - ExtractSignal read from " << fname << " doesn't inherit from MExtractor!" << endl;
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| 144 | return kFALSE;
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| 145 | }
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| 146 | ext1 = o ? (MTask*)o->Clone() : NULL;
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| 147 |
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| 148 | o = file.Get("ExtractTime");
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| 149 | if (o && !o->InheritsFrom(MExtractor::Class()))
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| 150 | {
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| 151 | *fLog << err << dbginf << "ERROR - ExtractTime read from " << fname << " doesn't inherit from MExtractor!" << endl;
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| 152 | return kFALSE;
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| 153 | }
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| 154 | ext2 = o ? (MTask*)o->Clone() : NULL;
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| 155 | if (!ext1 && !ext2)
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| 156 | {
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| 157 | *fLog << err << dbginf << "ERROR - Neither ExtractSignal nor ExrtractTime found in " << fname << "!" << endl;
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| 158 | return kFALSE;
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| 159 | }
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| 160 |
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| 161 | o = file.Get("MGeomCam");
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| 162 | if (o && !o->InheritsFrom(MGeomCam::Class()))
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| 163 | {
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| 164 | *fLog << err << dbginf << "ERROR - MGeomCam read from " << fname << " doesn't inherit from MGeomCam!" << endl;
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| 165 | return kFALSE;
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| 166 | }
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| 167 | geom = o ? o->ClassName() : "";
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| 168 |
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| 169 | TObjArray cont(l);
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| 170 | cont.Add(&cam);
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| 171 | return ReadContainer(cont);
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| 172 | }
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| 173 |
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| 174 | Bool_t MJCalibrateSignal::ProcessFile(MPedestalCam &pedcam)
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| 175 | {
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| 176 | if (!fSequence.IsValid())
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| 177 | {
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| 178 | *fLog << err << "ERROR - Sequence invalid!" << endl;
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| 179 | return kFALSE;
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| 180 | }
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| 181 |
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| 182 | //if (!CheckEnv())
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| 183 | // return kFALSE;
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| 184 |
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| 185 | CheckEnv();
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| 186 |
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| 187 | // --------------------------------------------------------------------------------
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| 188 |
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| 189 | *fLog << inf;
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| 190 | fLog->Separator(GetDescriptor());
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| 191 | *fLog << "Calculate calibrated data from runs ";
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| 192 | *fLog << fSequence.GetName() << endl;
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| 193 | *fLog << endl;
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| 194 |
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| 195 | // --------------------------------------------------------------------------------
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| 196 |
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| 197 | MDirIter iter;
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| 198 | const Int_t n0 = fSequence.SetupDatRuns(iter, fPathData);
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| 199 | const Int_t n1 = fSequence.GetNumDatRuns();
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| 200 | if (n0==0)
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| 201 | {
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| 202 | *fLog << err << "ERROR - No input files of sequence found!" << endl;
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| 203 | return kFALSE;
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| 204 | }
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| 205 | if (n0!=n1)
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| 206 | {
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| 207 | *fLog << err << "ERROR - Number of files found (" << n0 << ") doesn't match number of files in sequence (" << n1 << ")" << endl;
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| 208 | return kFALSE;
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| 209 | }
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| 210 |
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| 211 | // Read File
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| 212 | /*
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| 213 | MCalibrationIntensityChargeCam calcam;
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| 214 | MCalibrationIntensityQECam qecam;
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| 215 | MCalibrationIntensityBlindCam bndcam;
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| 216 | MCalibrationIntensityRelTimeCam tmcam;
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| 217 | */
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| 218 | MCalibrationChargeCam calcam;
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| 219 | MCalibrationQECam qecam;
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| 220 | MCalibrationBlindCam bndcam;
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| 221 | MCalibrationChargePINDiode pind;
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| 222 | MCalibrationRelTimeCam tmcam;
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| 223 | MBadPixelsCam badpix;
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| 224 |
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| 225 | MTask *extractor1=0;
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| 226 | MTask *extractor2=0;
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| 227 | TString geom;
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| 228 |
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| 229 | TObjArray calibcont;
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| 230 | calibcont.Add(&calcam);
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| 231 | calibcont.Add(&qecam);
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| 232 | calibcont.Add(&bndcam);
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| 233 | calibcont.Add(&pind);
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| 234 | calibcont.Add(&tmcam);
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| 235 |
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| 236 | if (!ReadCalibration(calibcont, badpix, extractor1, extractor2, geom))
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| 237 | return kFALSE;
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| 238 |
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| 239 | *fLog << all;
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| 240 | if (extractor1)
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| 241 | {
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| 242 | *fLog << underline << "Signal Extractor found in calibration file" << endl;
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| 243 | extractor1->Print();
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| 244 | *fLog << endl;
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| 245 | }
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| 246 | else
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| 247 | *fLog << inf << "No Signal Extractor: ExtractSignal in file." << endl;
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| 248 |
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| 249 | if (extractor2)
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| 250 | {
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| 251 | *fLog << underline << "Time Extractor found in calibration file" << endl;
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| 252 | extractor2->Print();
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| 253 | *fLog << endl;
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| 254 | }
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| 255 | else
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| 256 | *fLog << inf << "No Time Extractor: ExtractTime in file." << endl;
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| 257 |
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| 258 | if (!geom.IsNull())
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| 259 | *fLog << inf << "Camera geometry found in file: " << geom << endl;
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| 260 | else
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| 261 | *fLog << inf << "No Camera geometry found using default <MGeomCamMagic>" << endl;
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| 262 |
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| 263 | // This is necessary for the case in which it is not in the files
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| 264 | MBadPixelsCam badcam;
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| 265 |
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| 266 | // Setup Parlist
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| 267 | MParList plist;
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| 268 | plist.AddToList(this); // take care of fDisplay!
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| 269 | plist.AddToList(&badcam);
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| 270 | plist.AddToList(&pedcam);
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| 271 | plist.AddToList(&calibcont);
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| 272 |
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| 273 | // Setup Tasklist
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| 274 | MTaskList tlist;
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| 275 | plist.AddToList(&tlist);
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| 276 |
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| 277 | // FIXME: Move this to an intermediate class MJMagic
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| 278 | Byte_t filetype = 2;
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| 279 | /*
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| 280 | TString name = iter.Next();
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| 281 | Byte_t filetype = MRawFileRead::IsFileValid(name);
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| 282 | if (!filetype)
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| 283 | filetype = MReadMarsFile::IsFileValid(name)+1;
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| 284 | if (filetype<1||filetype>3)
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| 285 | {
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| 286 | gLog << err << "ERROR - FileType #" << (int)filetype << " of first file " << name << " unknown..." << endl;
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| 287 | return kFALSE;
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| 288 | } */
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| 289 | // 1 = raw-file
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| 290 | // 2 = raw-root file
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| 291 | // 3 = mc-raw file
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| 292 |
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| 293 | MReadReports readreal;
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| 294 | readreal.AddTree("Events", "MTime.", kTRUE);
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| 295 | readreal.AddTree("Trigger");
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| 296 | readreal.AddTree("Camera");
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| 297 | readreal.AddTree("Drive");
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| 298 | readreal.AddTree("CC");
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| 299 | readreal.AddTree("Currents");
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| 300 | readreal.AddFiles(iter);
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| 301 |
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| 302 | MReadMarsFile readmc("Events");
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| 303 | readmc.DisableAutoScheme();
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| 304 | readmc.AddFiles(iter);
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| 305 |
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| 306 | MRawFileRead readraw(NULL);
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| 307 | readraw.AddFiles(iter);
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| 308 |
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| 309 | MGeomApply apply; // Only necessary to create geometry
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| 310 | if (!geom.IsNull())
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| 311 | apply.SetGeometry(geom);
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| 312 | MBadPixelsMerge merge(&badpix);
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| 313 | MPedCalcFromLoGain pedlo;
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| 314 | MMcPedestalCopy pcopy;
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| 315 | MTaskEnv taskenv1("ExtractSignal");
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| 316 | MTaskEnv taskenv2("ExtractTime");
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| 317 | taskenv1.SetDefault(extractor1);
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| 318 | taskenv2.SetDefault(extractor2);
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| 319 | MCalibrateData calib;
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| 320 | if (filetype==3)
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| 321 | calib.SetCalibrationMode(MCalibrateData::kFfactor);
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| 322 | MCalibrateRelTimes caltm;
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| 323 | MBadPixelsCalc bpcal;
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| 324 | MBadPixelsTreat treat;
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| 325 |
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| 326 | MHCamEvent evt0(0, "PedestalFLG", "Pedestal from Lo Gain;;P [fadc/sl]");
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| 327 | MHCamEvent evt1(0, "Extra'd", "Extracted Signal;;S [fadc/sl]");
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| 328 | MHCamEvent evt2(0, "PedPhot", "Calibrated Pedestal;;P [\\gamma]");
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| 329 | MHCamEvent evt3(1, "PedRMS", "Calibrated Pedestal RMS;;\\sigma_{p} [\\gamma]");
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| 330 | MHCamEvent evt4(0, "Interp'd", "Interpolated Signal;;S [\\gamma]");
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| 331 | MHCamEvent evt5(2, "Unsuitable", "Unsuitable event ratio;;%");
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| 332 | MHCamEvent evt6(0, "Times", "Arrival Time;;T [slice]");
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| 333 | evt0.EnableVariance();
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| 334 | evt2.EnableVariance();
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| 335 | evt3.EnableVariance();
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| 336 | evt6.EnableVariance();
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| 337 |
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| 338 | MFillH fill0(&evt0, "MPedestalCam", "FillPedestalFLG");
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| 339 | MFillH fill1(&evt1, "MExtractedSignalCam", "FillExtracted");
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| 340 | MFillH fill2(&evt2, "MPedPhotCam", "FillPedPhot");
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| 341 | MFillH fill3(&evt3, "MPedPhotCam", "FillPedRMS");
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| 342 | MFillH fill4(&evt4, "MCerPhotEvt", "FillInterpolated");
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| 343 | MFillH fill5(&evt5, "MBadPixelsCam", "FillUnsuitable");
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| 344 | MFillH fill6(&evt6, "MArrivalTime", "FillTimes");
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| 345 |
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| 346 | MWriteRootFile write(2, Form("%s{s/_D_/_Y_}", fPathOut.Data()), fOverwrite);
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| 347 | // Run Header
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| 348 | write.AddContainer("MRawRunHeader", "RunHeaders");
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| 349 | write.AddContainer("MBadPixelsCam", "RunHeaders");
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| 350 | write.AddContainer("MGeomCam", "RunHeaders");
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| 351 | // Monte Carlo Headers
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| 352 | write.AddContainer("MMcTrigHeader", "RunHeaders", kFALSE);
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| 353 | write.AddContainer("MMcConfigRunHeader", "RunHeaders", kFALSE);
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| 354 | write.AddContainer("MMcCorsikaRunHeader", "RunHeaders", kFALSE);
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| 355 | // Monte Carlo
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| 356 | write.AddContainer("MMcEvt", "Events", kFALSE);
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| 357 | write.AddContainer("MMcTrig", "Events", kFALSE);
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| 358 | // Data
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| 359 | write.AddContainer("MCerPhotEvt", "Events");
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| 360 | write.AddContainer("MPedPhotCam", "Events");
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| 361 | write.AddContainer("MTime", "Events", kFALSE);
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| 362 | write.AddContainer("MRawEvtHeader", "Events");
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| 363 | write.AddContainer("MArrivalTime", "Events");
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| 364 | // Slow-Control: Current
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| 365 | write.AddContainer("MTimeCurrents", "Currents", kFALSE);
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| 366 | write.AddContainer("MCameraDC", "Currents", kFALSE);
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| 367 | write.AddContainer("MReportCurrents", "Currents", kFALSE);
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| 368 | // Slow-Control: Camera
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| 369 | write.AddContainer("MReportCamera", "Camera", kFALSE);
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| 370 | write.AddContainer("MTimeCamera", "Camera", kFALSE);
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| 371 | write.AddContainer("MCameraAUX", "Camera", kFALSE);
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| 372 | write.AddContainer("MCameraCalibration", "Camera", kFALSE);
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| 373 | write.AddContainer("MCameraCooling", "Camera", kFALSE);
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| 374 | write.AddContainer("MCameraHV", "Camera", kFALSE);
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| 375 | write.AddContainer("MCameraLV", "Camera", kFALSE);
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| 376 | write.AddContainer("MCameraLids", "Camera", kFALSE);
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| 377 | // Slow-Control: Trigger
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| 378 | write.AddContainer("MReportTrigger", "Trigger", kFALSE);
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| 379 | write.AddContainer("MTimeTrigger", "Trigger", kFALSE);
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| 380 | // Slow-Control: Drive
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| 381 | write.AddContainer("MPointingPos", "Drive", kFALSE);
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| 382 | write.AddContainer("MReportDrive", "Drive", kFALSE);
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| 383 | write.AddContainer("MTimeDrive", "Drive", kFALSE);
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| 384 | // Slow-Control: Central Control
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| 385 | write.AddContainer("MReportCC", "CC", kFALSE);
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| 386 | write.AddContainer("MTimeCC", "CC", kFALSE);
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| 387 |
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| 388 | // Now setup tasklist for events
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| 389 | MTaskList tlist2;
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| 390 | tlist2.AddToList(&apply);
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| 391 | tlist2.AddToList(&merge);
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| 392 | tlist2.AddToList(filetype==3 ? (MTask*)&pcopy : (MTask*)&pedlo);
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| 393 | tlist2.AddToList(&fill0);
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| 394 | if (extractor1)
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| 395 | tlist2.AddToList(&taskenv1);
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| 396 | if (extractor2)
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| 397 | tlist2.AddToList(&taskenv2);
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| 398 | tlist2.AddToList(&fill1);
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| 399 | tlist2.AddToList(&calib);
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| 400 | tlist2.AddToList(&caltm);
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| 401 | tlist2.AddToList(&fill2);
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| 402 | tlist2.AddToList(&bpcal);
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| 403 | tlist2.AddToList(&treat);
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|---|
| 404 | tlist2.AddToList(&fill3);
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|---|
| 405 | tlist2.AddToList(&fill4);
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|---|
| 406 | tlist2.AddToList(&fill5);
|
|---|
| 407 | tlist2.AddToList(&fill6);
|
|---|
| 408 |
|
|---|
| 409 | // Setup List for Drive-tree
|
|---|
| 410 | MPointingPosCalc pcalc;
|
|---|
| 411 |
|
|---|
| 412 | // Now setup main tasklist
|
|---|
| 413 | switch (filetype)
|
|---|
| 414 | {
|
|---|
| 415 | case 1: tlist.AddToList(&readraw); break;
|
|---|
| 416 | case 2: tlist.AddToList(&readreal); break;
|
|---|
| 417 | case 3: tlist.AddToList(&readmc); break;
|
|---|
| 418 | }
|
|---|
| 419 |
|
|---|
| 420 | tlist.AddToList(&tlist2, "Events");
|
|---|
| 421 | tlist.AddToList(&pcalc, "Drive");
|
|---|
| 422 | tlist.AddToList(&write);
|
|---|
| 423 |
|
|---|
| 424 | // Create and setup the eventloop
|
|---|
| 425 | MEvtLoop evtloop(fName);
|
|---|
| 426 | evtloop.SetParList(&plist);
|
|---|
| 427 | evtloop.SetDisplay(fDisplay);
|
|---|
| 428 | evtloop.SetLogStream(fLog);
|
|---|
| 429 | if (!SetupEnv(evtloop))
|
|---|
| 430 | return kFALSE;
|
|---|
| 431 |
|
|---|
| 432 | // Execute first analysis
|
|---|
| 433 | if (!evtloop.Eventloop(fMaxEvents))
|
|---|
| 434 | {
|
|---|
| 435 | *fLog << err << GetDescriptor() << ": Failed." << endl;
|
|---|
| 436 | return kFALSE;
|
|---|
| 437 | }
|
|---|
| 438 |
|
|---|
| 439 | tlist.PrintStatistics();
|
|---|
| 440 |
|
|---|
| 441 | if (!WriteResult())
|
|---|
| 442 | return kFALSE;
|
|---|
| 443 |
|
|---|
| 444 | *fLog << all << GetDescriptor() << ": Done." << endl;
|
|---|
| 445 | *fLog << endl << endl;
|
|---|
| 446 |
|
|---|
| 447 | return kTRUE;
|
|---|
| 448 | }
|
|---|
