Please do not write behind the end of line tag so that it is possible to send a Changelog file to a line printer directly. Thanks. For your entries please follow EXACTLY this style: _yyyy/mm/dd_[Your Name] _ ___*_filename: _____-_description _ ___*_filename2, filename3: _____-_description _ _ _ While an underscore is a placeholder for a white-space or an empty line. -*-*- END OF LINE -*-*- 2005/03/17 Thomas Bretz * callisto.cc: - added new option moon - use light condition from MSequence to determin light condition automatically * mjobs/MJPedestal.h: - allow setting SetUseHists also to kFALSE * mjobs/MSequence.[h,cc]: - added fLightCondition * mcalib/MCalibrateData.cc: - undocumented change from Markus Gaug * mfilter/MFCT1SelBasic.[h,cc], mfilter/MFCT1SelStandard.[h,cc], mfilter/MFCT1SelFinal.[h,cc]: - moved to manalysisct1 2005/03/16 Thomas Bretz * callisto.cc: - set changed extractor in MJCalibrateSignal from MJPedestal - don't process 'range finding' for MonteCarlo data * callisto.rc: - removed obsolete Modified* option * mjobs/MJCalibrateSignal.[h,cc]: - removed obsolete flag for ModifiedExtractWin - allow also NULL for SetExtractor - rearanged the too MWriteRootFile instantiations otherwise callisto crashes in MWriteRootFile::ChangeFile - removed some obsolete comments about an old MC workaround * mdata/MDataChain.cc: - fixe to allow sign after e (eg. 1e-3, 1e+5 instead of 1e3, 1e5) * mcalib/MCalibColorSet.cc, mcalib/MCalibrationChargeCalc.cc, mhcalib/MHCalibrationCam.cc: - undocummented change 2005/03/16 Markus Gaug * msignal/MExtractTimeAndChargeSlidingWindow.cc - fixed a bug in the reading of the resource file (reading of the MExtractTimeAndCharge resources was skipped). * mcalib/MCalibrateData.cc - for the case that the high-gain saturates, but the low-gain signal could not be extracted successfully, take the high-gain signal, multiplied by 1.5 (before, 0 was taken erroneously). * msignal/MExtractTimeAndCharge.cc - catch one potential case for memory leaks in the low-gain calculation. Extract low-gain only if the remaining extraction window is not smaller than the number of slices needed by the signal extractor. - set the default fgLoGainStartShift to -3.5 * msignal/MExtractTimeAndChargeSpline.[h,cc] * msignal/MExtractTimeAndChargeDigitalFilter.[h,cc] - adjust fLoGainStartShift by one slice, after findings from MC. 2005/03/15 Markus Gaug * msignal/MExtractTimeAndChargeSpline.h - take fRandomIter out of the streamer. - take fRiseTimeLoGain and fFallTimeLoGain into the streamer. - raise version number to 4 * mjobs/MJCalibration.cc - set default to kFALSE for PIN Diode or Blind Pixel calibration (was kTRUE by error). 2005/03/15 Thomas Bretz * mjobs/MJCalibrateSignal.[h,cc]: - added the fExtractor data member - added a destructor deleting it - only read extractor from file if not set by user - user fExtractor as extractor1 - do not delete extractor1 if set by user - added member function to set extractor * mjobs/MJPedestal.cc: - removed MFEventSelector workaround again - do not write pedy file anymore * callisto.cc: - MJCalibrateSignal now takes the signal extractor directly instead of taking the long way round a new file * mpedestal/MExtractPedestal.cc: - ReInit extractor correctly. Now the workaround should be really obsolete * mbase/MGMenu.[h,cc]: - make fix fix also compile root 3.10.02 2005/03/14 Thomas Bretz * mbase/MGMenu.h: - added a fix for root 4.02.00 2005/03/14 Markus Gaug * mcalib/MCalibrateData.cc - catch the case that now high-gain low-gian intercalibration const. is available. * mjobs/MJPedestal.cc - modify option for pedy*.root: from UPDATE to RECREATE 2005/03/11 Markus Gaug * callisto.rc - changed default weights for DF to cosmics_weights4.dat. (This has turned out to be the most stable set of weights). * mjobs/MJCalibration.cc - some cosmetic changes in the output - in case of WriteHists(), do not overwrite existing signal*.root file, but append histograms (bugfix!) 2005/03/10 Toni Coarasa (With Nadia's and Alessandro's inside) * mjobs/MJCut.cc - inclusion of (TString) to avoid compiler error under 2.95.3 * sinope.cc - inclusion of to avoid compiler error under 2.95.3 2005/03/10 Markus Gaug * msignal/MExtractTimeAndCharge.cc - set fgLoGainStartShift to -4.0 - put a check to avoid a dynamic low-gain range < 0 (should not occur with current extractors, but one never knows...) * msignal/MExtractor.[h,cc] - introduced Clear()-function, used in SetRange() * mjobs/MJCalibrateSignal.cc - changed order of initialization of the 2 MWriteRootFiles whereupon the crash goes away. Have to revise the /dev/null work-around in MWriteRootFile! 2005/03/09 Markus Gaug * msignal/MExtractTimeAndCharge.cc - catch a (very unprobable) case in which the low-gain range could be negative * mjobs/MJCalibrateSignal.cc - modify writing of MCalibrationPulseTimeCam to disk in order to avoid program crash in the destructor of MJCalibrateSignal * mhcalib/MHGausEvents.h - take fGraphEvents, fGraphPowerSpectrum, fHPowerProbability and fPowerSpectrum out of the streamer. - intialize fFlags to 0 2005/03/09 Thomas Hengstebeck * mranforest/MRFEnergyEst.cc - changed call of min, max functions to TMath::Min() and TMath::Max() to avoid compilation problems with some gcc versions - changed check of energy rule (last col of MHMatrix) so, that any rule containing "fEnergy" is accepted. 2005/03/08 Markus Gaug * mhcalib/MHPedestalCam.[h,cc] - introduce new parameter "fFitStart" to decide from outside where to start fitting the pedestals. 2005/03/07 Markus Gaug * mjobs/hilocalib_df6.root * mjobs/hilocalib_sp2.root - two files with the high-gain vs. logain intercalibration results. for Digital filter and September data and Spline and December data. * callisto.rc - allow setting the variables ExtractWinLeft and ExtractWinRight. * mhcalib/MHCalibrationHiLoCam.h * mhcalib/MHCalibrationCam.h * mhcalib/MHGausEvents.h - put the Draw-functions into the *MENU* * mjobs/MJCalibration.[h,cc] - introduced reading of hi-vs.logain calibration file * mjobs/MJPedestal.[h,cc] - modified range setting according Thomas S. suggestions * msignal/MArrivalTime.[h,cc] - took out some commented code which will not be used any more - improve Print() function 2005/03/05 Markus Gaug * msignal/MExtractTimeAndChargeSpline.[h,cc] - removed the obsolete parts of "kMaximum" and "kHalfMaximum" in the code which were still persistent - set default extraction type to integral (instead of amplitude) - set version number to 3 * mcalib/MCalibrationChargeCam.[h,cc] - added new function GetAvergedConvFADC2PhePerArea for the datacheck * mjobs/MJPedestal.[h,cc] - added function WriteExtractor which writes the extractor with the new ranges to disk if fPulsePosCheck has been selected. * mjobs/MJCalibrateSignal.[h,cc] - added functionality to read the updated extractor from MJPedestalY2 (with the new extraction ranges). 2005/03/04 Abelardo Moralejo * mmc/MFadcDefine.h - Changed constant SUBBINS from 5 to 500. This defines the resolution of the analog signal simulation in the camera MC. The time step is the duration of one FADC slice divided by SUBBINS. The change was necessary to implement correctly the PMT time jitter. 2005/03/03 Markus Gaug * mjobs/pedestalref.rc * mjobs/calibrationref.rc * mjobs/calibrationref_Nov04.rc - added documentation * mjobs/signalref.rc - added * mjobs/MJPedestal.cc - re-added MFEventSelector which had been removed by TB on the 15.2.2005. - added pulse position selector, as decided at the Berlin soft- ware meeting. * callisto.cc - added SetPulsePosCheck() in MJPedestalY2 * mjobs/MJCalibrateSignal.cc - updated pulse pos. calculator, can be switched off now. * mjobs/MJCalib.[h,cc] - added flag fPulsePosCheck 2005/03/02 Markus Gaug * mjobs/MJCalib.[h,cc] * mjobs/MJPedestal.[h,cc] * mjobs/MJCalibration.[h,cc] * mjobs/MJCalibrateSignal.[h,cc] - put the storage types in the base class * mbadpixels/MBadPixelsCam.cc - add some output in case that AsciiRead does not work * msignal/MExtractTimeAndChargeSpline.cc - speed integration up a little bit. * callisto.rc - adapt the low-gain stretch for the different pulse form for calibration and cosmics pulses (only applied if spline is used). 2005/02/25 Markus Gaug * mhcalib/MHCalibrationHiLoCam.[h,cc] - fixed bug in inter-calibration hi-logain for arrival times. * mhcalib/MHCalibrationPulseTimeCam.[h,cc] - fixed the situation where the maximum bin is already found in the low-gain samples. * mjobs/MJCalibration.cc - write the MPedestalCams also to disk (needed for data-check). 2005/02/25 Abelardo Moralejo * msignal/MC_calibration_weights_UV.dat - Added. Weights file for using the digital filter on MC calibration files. For the moment the weights are the same as in the file calibration_weights_UV.dat, only that high and low gain have both the same weights because for the moment the MC pulse shape is the same in both gain branches. 2005/02/24 Markus Gaug * mjobs/MJCalibrateSignal.cc - include display of pulse times (calculated in the post-process) - include the possibility for the pixel check (like in MJCalibration) * mhcalib/MHCalibrationHiLoCam.cc - set default range up to 30. * mhcalib/MHCalibrationChargeBlindPix.h - take the TVectors out of the streamer, to be exectuable with root.04.02 2005/02/24 Thomas Hengstebeck * macros/RFEnergyEst.C - new macro to show the usage of RFEnergyEst class. 2005/02/24 Abelardo Moralejo * mtemp/mpadova/macros/resize.C - moved MSrcPosCam output container from RunHeaders to Events tree. 2005/02/18 Marcos Lopez * mflux/ - new directory to store the flux related classes. * mflux/MHadAlphaCut.{h,cc} - container to store the optimal hadronness and alpha cut for each bin in estimated energy and theta. * mflux/MFHadAlpha.{h,cc} - filter to apply the hadronness and alpha cuts stored in MHadAlphaCut. It can be selected to apply only alpha, only hadronness cut or both. 2005/02/18 Markus Gaug * mhcalib/MHCalibrationPulseTimeCam.[h,cc] - new class to histogram the arrival time of cosmics above a certain threshold. * mcalib/MCalibrationPulseTimeCam.[h,cc] - new class container with results of MHCalibrationPulseTimeCam * mjobs/MJCalibrateSignal.cc - include MCalibrationPulseTimeCam to display 2005/02/18 Thomas Bretz * mbase/MStatusDisplay.cc: - switch off TH1::AddDirectory during DrawClonePad * mjobs/MSequence.[h,cc]: - added some code (still commented) for later use, allowing to setup a different filename for each runfile - added SetNight member function - added Add*Runs member function - with this changes MSequence can replace MRunIter now - allow requesting of standard path from outside (GetStandardPath) * Makefile: - added sinope * sinope.cc: - added (small tool to check contents of run for datacenter) * callisto.cc: - added background information about Callisto * ganymed.cc: - added background information about Ganymed * mjobs/MJCalibrateSignal.cc: - removed special MC code. The MC files now have a lo-gain switch and we can extract the pedestal rms from lo-gain - don't print statistics if nothing was executed - fixed display. The displayed pedestal RMS was the one caluclated with a extractor but not at random position (This only effects the display, the algorithm was ok) 2005/02/17 Markus Gaug * mjobs/MJCalibTest.cc - removed bug treating the MC calibration files uncorrectly - added Pixel-Check treatment * mjobs/MJCalibration.cc - added Pixel-Check treatment * callisto.rc - added pixel-check option * msignal/MExtractTimeAndChargeDigitalFilter.cc - calculate high-gain signal even if saturation occurs 2005/02/17 Thomas Bretz * mjobs/MJStar.cc: - fixed some missing containers in case of MC files * callisto.cc: - removed obsolete second check for kModeC * mars.rc: - added a lot of option to be able to use a different signal extractor looking into uncalibrated data * manalysis/MCameraData.[h,cc]: - added Print() member function * manalysis/MCerPhotAnal2.[h,cc]: - switched off writing into MCerPhotEvt * mdata/MDataChain.[h,cc]: - added code to handle priorities of operators correctly * mhist/MHEvent.cc: - fixed display for MPedestalRMS * mjobs/MJCalib.cc: - fixed treatment of PixelCheck resource * mjobs/MJCalibrateSignal.cc: - added some comments about Monte Carlo - added MMcFadcHeader to output * mjobs/MJPedestal.cc: - do not allow 'UseData' for Monte Carlos. Reason is given as comment in the code * mmain/MEventDisplay.[h,cc]: - changed such, that mars.cc allows to set the used extractor - removed the obsolete cam.root, ped.root option * mmain/MCameraDisplay.cc: - adapted to change in MEventDisplay 2005/02/16 Javier Rico * mhistmc/MHMcUnfoldCoeff.[cc,h], mhistmc/Makefile, mhistmc/HistMcLinkDef.h - Added container class holding the histograms of the coefficients for the (iterative) unfolding. * mmontecarlo/MMcUnfoldCoeffCalc.[cc,h], mmontecarlo/Makefile, mmontecarlo/MonteCarloLinkDef.h - Added task class to compute the coefficients for the (iterative) unfolding. * macros/unfoldCoeff.C - added macro that computes the effective areas and coefficients from a MC input file (with OriginalMC tree and MEnergyEst branch containing the energy estimator). This may be used as layout for spectrum computation program. 2005/02/16 Markus Gaug * mdata/MDataChain.cc - replaced ROOT version check for the compiler from 4.02.00 to 4.01.00 * mranforest/MRFEnergyEst.cc - include "TVector.h", otherwise this class does not compile in newer root versions * msignal/MExtractTimeAndCharge.cc - initialize fLoGainStartShift correctly if read from conf. file and modified fOffsetLoGain exists. * msignal/*weights*.dat - new weights with the uniform pedestal RMS. (Please use these!) * msignal/pulpo_weights*.dat - new weights with the pulpo-pulse form and without NSB!! 2005/02/16 Thomas Hengstebeck * mranforest/MRFEnergyEst.[h,cc] - added RF class for energy estimation * mranforest/MRFEnergyEst.cc - changed calculation of estimated energy, now interpolated values are returned 2005/02/16 Abelardo Moralejo * macros/starmc2.C: - Changed the way in which the "OriginalMC" tree is copied from the input to the output file. Now we ise the new procedure MWriteRootFile::AddCopySource * mhistmc/MHMcCollectionArea.cc - Changed default fName to "MHMcCollectionArea" * mtemp/mpadova/macros/resize.C - Changed weights 2005/02/16 Thomas Bretz * mbase/MEvtLoop.cc: - fixed a typo * mbase/MParList.cc, mfileio/MReadMarsFile.cc, mfileio/MReadTree.cc, mfileio/MWriteRootFile.cc, mjobs/MJStar.cc: - optimized size of some output * mfileio/MWriteRootFile.[h,cc]: - fixed CopySource option for single-file case * mhist/MHCamEvent.cc: - replaced the warn in SetupFill by an inf * mhcalib/MHCalibrationCam.cc, mhcalib/MHCalibrationHiLoCam.cc, mhcalib/MHCalibrationChargePINDiode.cc: - removed obsolete output after a failed FindCreateObj (the function itself does the output in case of failure) * mhcalib/MHCalibrationCam.cc: - replaced 'err' by 'warn' for under-/overflow in lo-gain pixel, it doesn't result in an fatal error (abort) * mranforest/MRanForestCalc.cc: - added a missing debug level to some output * mranforest/MRFEnergyEst.[h,cc]: - cleaned up includes * callisto.cc, ganymed.cc, star.cc: - implemented enhanced handling of resource debugging * mbase/Makefile, mbase/BaseLinkDef.h: - added MEnv * mbase/MEnv.[h,cc]: - added * mjobs/MJob.[h,cc]: - added new function to allow distribution of extranl MEnv - replaced Bool_t by Int_t for fEnvDebug * mjobs/MJPedestal.cc: - adapted to changes of EnvDebug 2005/02/15 Abelardo Moralejo * macros/mccalibrate.C - fixed small bug * mmontecarlo/MMcCollectionAreaCalc.[h,cc] * mhistmc/MHMcCollectionArea.[h,cc] - Changed the way of calculating final effective area for data analysis. The new approach requires the use of MC files produced with the current CVS version of camera. We now make use of the true total number of produced MC events, and allow for the setting of a "tentative" differential gamma spectrum to be used in the calculation of effective areas. Removed unused constructor argument "input" in MMcCollectionAreaCalc. * macros/collarea.C - Adapted to the new way of calculating effective areas. 2005/02/15 Thomas Bretz * callisto.rc: - replaced mutal exclusive options (Integral, Amplitude) by a one-line resource * msignal/MExtractTimeAndChargeSpline.cc: - replaced mutal exclusive options (Integral, Amplitude) by a one-line resource "ExtractionType" (old code still works) * manalysis/MCerPhotEvt.[h,cc]: - added new variables to store information about islands and removed pixels - PRELIMINARY - increased class version number * mfilter/MFSoftwareTrigger.cc: - optimized output in PostProcess * mimage/MHImagePar.[h,cc]: - added new histograms for new variables in MCerPhotEvt * mimage/MImagePar.[h,cc]: - added new data members for the new image parameters - increased class version * mimage/MImgCleanStd.[h,cc]: - adapted image cleaning to calculate the new image parameters - added a flag to keep single core pixels * manalysis/MMatrixLoop.[h,cc], mfileio/MReadReports.[h,cc], mfileio/MReadRflFile.[h,cc], mfileio/MReadTree.[h,cc], mraw/MRawFileRead.[h,cc], mraw/MRawSocketRead.h: - renamed GetFileName to GetFullFileName * mbase/MInputStreamID.h: - added new member function HasStreamId * mbase/MParContainer.[h,cc]: - added a static list to keep track of all created TMathodCall objects * mbase/MTask.cc: - enhanced PrintStatistics * mfileio/MRead.[h,cc]: - new abstract function GetFullFileName - added implementatio of GetFileName based on GetFullFileName * mfileio/MWriteRootFile.[h,cc]: - moved open of a new file to new common member function OpenFile - allow to use an already existing file also when using rules - added a new option which can be used to copy an existing tree (without any change) from the old file into the new file. (in principal you can also do this for some of its branches only) This is done by AddCopySource * mjobs/MJCalibrateSignal.cc: - in case of MonteCarlo files write an independant tree 'MonteCarlo' for 'MMcEvtBasic' * mjobs/MJStar.cc: - copy tree 'MonteCarlo' from old into new files * mjobs/MJPedestal.cc: - removed wrong use of MFEventSelector * mpedestal/MExtractPedestal.cc: - made sure that fExtractor is correctly pre- and postprocessed. * mbase/MTask.cc: - don't preprocess a task if it has been preprocessed already * mraw/MRawFileWrite.cc: - if display is set write output to status line * mfileio/MReadTree.cc, mfileio/MReadMarsFile.cc: - moved code to display filename in status display from MReadMarsFile::Notify to MReadTree::Notify 2005/02/15 Markus Gaug * mjobs/MJCalib.h - added GetDataFlag(), otherwise code does not compile! * mhcalib/MHCalibrationChargeCam.cc - moved default saturation limit for number of high-gain events from 0.02 to 0.05. * msignal/MExtractTimeAndCharge.cc - lowered default low-gain switch from 150 to 120. (for calibration events which saturate more than 5% of the events). * mjobs/MJCalib.[h,cc] - include possibility to display pixels distributions for test reasons 2005/02/14 Thomas Bretz * callisto.cc, ganymed.cc, star.cc: - added some more information to '--help' output - replaced MSequences by MDataSet - implemented new debugging options (maybe not perfect yet) --print-files and --print-found * mjobs/MJCut.[h,cc]: - replaced MSequences by MDataSet - write MEnergyEst - recalculate MHillasSrc - made sure both MWriteRootFile have different names - don't use "same" option if no off-data * mjobs/MSequences.[h,cc]: - removed * mjobs/MDataSet.[h,cc]: - added * manalysis/MEventRateCalc.[h,cc]: - added a fix which make sure, that the rate is not influenced too much by the start of data taking - fixed setting of mean time corresponding to rate-interval * mraw/MRawFileRead.[h,cc]: - calculate total number of events from all files in PreProcess * mcalib/MCalibConstCam.cc: - added case 2 to GetPixelContent * mjobs/MJCalibrateSignal.cc: - fixed redirection of stream with interleaved calibration infos - changed 'Arrival Time' to 'Calibrated Arrival Time' - display interpolated signal in equivalent photoelectrons to to get rid of scaling effects which makes it difficult to see details of the structure of the inner pixels in the histogram. With this you can immediatly see whether the relative number of phe in the outer pixels is equiv. to the inner pixels. - the same for the calibration factor - with the same argument - adapted to change in MWriteRootFile - use MReadMarsFile for Monte Carlo flag set * mhist/MHCamera.cc: - changed drawing such, that NaN is not displayed anymore * Makefile: - added new program ganymed * mfileio/MWriteRootFile.[h,cc]: - added possibility to use UPDATE mode with rules (dangerous!) as discussed with Abelardo, Daniel M. and Thomas S. * mjobs/MJStar.cc: - adapted to change in MWriteRootFile - added software trigger (still untuned) as suggested by Thomas S. - added calculation of source position before calculation of image parameters - added MPointingPos to Events-Tree - removed MPointingPos from Drive-Tree - renamed sub-tasklists to something more intuitive * mjobs/Makefile, mjobs/JobsLinkDef.h: - added MJCut.cc * mraw/MRawFileRead.cc: - return kERROR if ReInit fails * mfilter/MFSoftwareTrigger.[h,cc]: - updated to allow using time coincidence - changed default values - added a pattern independant trigger algorithm * mbase/MDirIter.cc: - implemented option 'dbg' in Print() * mjobs/MJCalib.h: - added a getter for data-flag (should be renamed to 'datatype' soon) 2005/02/12 Abelardo Moralejo * mtemp/mpadova/macros/wobblemap.C - Added. Macro to do some studies on wobble mode data. * macros/mccalibrate.C - Added option to divide the output in a train and a test sample. Included in output new container MMcEvtBasic (if found in input files) for later use in effective areas calculations. * macros/starmc2.C - Added writing out of new container MMcEvtBasic. Removed possibility of splitting output in train and test samples, since this has now to be done in mccalibrate.C to make possible that the tree OriginalMC containing MMcEvtBasic has all the original MC events (and only those) from which the events present in the Events tree derive. * macros/starmc.C - Changed a couple of wrong "." by "->" in function calls. Changed default tail cuts. 2005/02/12 Markus Gaug * msignal/MExtractTimeAndChargeSpline.cc - change default rise time to 0.5 and default fall time to 1.5 * callisto.rc - made intitializations of extractors more explicit * mpedestal/MExtractPedestal.cc - make check for even number of slices in the case of "fundamental" pedestal calc. * mcalib/MCalibrationChargeCalc.cc - take out some commented code * mjobs/MJCalib.h - removed GetDataFlag() 2005/02/12 Abelardo Moralejo * mmc/MMcTrig.hxx - Added getter GetNumFirstLevel. This is necessary if that data member is to be used for instance in MF filters. There was already a getter, but it is called GetFirstLevel and hence not recognized. 2005/02/11 Abelardo Moralejo * mmc/MMcEvtBasic.[h,cc]: - New class. Contains 5 very basic MC parameters which we intend to save for all generated Corsika events. This is needed for proper effective area calculations. * mmc/Makefile, McLinkDef.h - Added new class above. 2005/02/11 Thomas Bretz * mfileio/MWriteRootFile.[h,cc]: - added the possibility to write to an already existing file. This doesn't affect the old behaviour, but using this new feature might still have problems. * mfileio/MReadReports.cc: - fixed column-level in PrintStatistics * mjobs/MJCalibrateSignal.cc: - keep MMcRunHeader in the output 2005/02/10 Abelardo Moralejo * macros/mccalibrate.C - Added possibility to calibrate in photons or photoelectrons * macros/starmc2.C - Added comment about value of cleaning levels 2005/02/10 Markus Gaug * mcalib/Makefile * mcalib/CalibLinkDef.h * mcalib/MCalibrate.[h,cc] - removed mcalib/MCalibrate.* because it has been replaced by MCalibrateData * mmain/MEventDisplay.cc - replaced MCalibrate by MCalibrateData * mhcalib/MHCalibrationCam.cc - replaced warning about empty histogram from red (err) by yellow (warn). * mcalib/MCalibColorSet.cc - return kTRUE in case of MC-file * msignal/MExtractTimaAndChargeSpline.[h,cc] - make sure that all variables are set correctly independent on the order of their initialization by the user 2005/02/10 Thomas Bretz * mgeom/MGeomCam.[h,cc]: - added new member functions (GetNeighbors) to get all pixels around a given pixel with a given radius * mars.rc: - use same values for image cleaning as default in star * mpointing/MSrcPosCalc.[h,cc]: - added the possibility to set the Source position from a resource file * mjobs/MJStar.cc: - write MMcRunHeader to RunHeaders * mfileio/MWriteRootFile.cc: - removed an obsolete line - removed a debug line which should not be there * mimage/MHillas.h: - added new Getter GetDist0 returning the distance to the camera center * mhflux/MHFalseSource.cc: - the scaling in Paint() was nonsense in case we are looking at on/off-data. Fixed. 2005/02/10 Abelardo Moralejo * manalysis/MMcCalibrationUpdate.h - Added comment on new member fSignalType. Sorry for compilation problems... I forgot to commit the header yesterday, but M. Gaug did it. * macros/starmc.C - Cleaned up a little bit, made the option to choose between calibration in photons or phe- easier to set. * manalysis/MMcCalibrationUpdate.[h,cc] - Added getter and setter for fSignalType. Set fSignalType=kPhot as default for consistency with MCalibrateData. 2005/02/09 Abelardo Moralejo * manalysis/MMcCalibrationUpdate.cc - Updated to make the MC calibration in phe- work * macros/starmc.C - same as above. Now default is calibration in phe- * mraw/MRawEvtHeader.h - Added setter for the trigger pattern, absolutely needed for creating proper MC root files. 2005/02/09 Markus Gaug * manalysis/MMcCalibrationUpdate.h - added missing declaration of fSignalType * mjobs/MJPedestal.[h,cc] * mjobs/badpixels_0_559.rc * callisto.rc - allow exclusion of bad pixels from the beginning (default is Pixel 0 and 559). - removed some obsolete includes - took out data member fPedestalHist from MJPedestal.h which removes the crash, however I don't understand why it caused the crash!!! There seem to be problems with memory usage either in callisto.cc or in this class!! (valgrind shows several memory leaks in the TG... classes). * mjobs/MJCalibration.cc - write display and containers also in case of failure of eventloop * mhcalib/MHGausEvents.cc - make default display window 600x600 * mcalib/MCalibrationQECamMagic.cc - updated five pixels * mpedestal/MExtractPedestal.[h,cc] * mpedestal/MPedCalcPedRun.cc * mpedestal/MPedCalcFromLoGain.cc - included possibility for intermediate pedestal cam (not yet used) * msignal/MExtractTimeAndChargeDigitalFilterPeakSearch.cc - initialize the bad events counters to 0 also in constructor - release the limit for bad events a bit * mcalib/MCalibrationTestCam.h - take out include of TArrayI (already in base class) * mcalib/MCalibrateData.h - make default argument for SetSignalType kPhe. * mjobs/MJCalibrateSignalFromOuside.[h,cc] - removed 2005/02/08 Markus Gaug * mhcalib/MHCalibrationCam.cc * mcalib/MCalibrationChargeCalc.cc - replaced GetNumExecutions()==0 condition by GetNumExecution() < 1 2005/02/08 Thomas Bretz * mpointing/MPointingPosInterpolate.cc: - use debug option in addition to switch off output from internal eventloop. It is confusing having this output inside another eventloop. - updated missing connections in class description * msignal/MExtractTimeAndChargeDigitalFilterPeakSearch.cc: - made sure that output of PostProcess fits into 80col boundary * mimage/MHillas.cc: - removed an obsolete call to TLine::Paint() in Paint. 2005/02/07 Thomas Bretz * mbase/MFilter.cc: - use paranthesis around ClassName in GetRule * mdata/MDataFormula.h: - fixed a wrong comment in variable description * mhist/MHCamEvent.[h,cc], mhist/MHCamera.[h,cc], mjobs/MJCalibrateSignal.cc, mjobs/MJCalibrateSignalFromOutside.cc: - to make sure there are no missunderstandings we have to replace all occurances of 'Variance' by 'SqrtVariance' (it was not my decision) * mastro/MAstro.[h,cc]: - added new function Angle2Coordinate * mbase/MTaskEnv.[h,cc]: - fixed a bug which caused the resource task to be ignored if the default task was '' * mhbase/MH3.cc: - fixed a bug in Paint (use GetListOfPrimitives->FindObject instead of FindObject) which caused the histogram to be put a lot of times into the pad. * mjobs/MJCalib.[h,cc]: - derived MJCalib from MJob in order to be able to move common code from derived classes into the base-class - implemented CheckEnvLocal to handle the resource 'DataType' - changed publicity of some variables and functions to allow setting file type from outside - added new function to set data-type for use in callisto.cc * mjobs/MJCalibTest.[h,cc], mjobs/MJCalibrateSignal.[h,cc], mjobs/MJCalibration.[h,cc], mjobs/MJPedestal.[h,cc]: - removed double inheritance, replaced by single inheritance from MJCalib - replaced code to handle the resource 'DataType' by the common code in the base class - put reading of reference file into a new member function to make source code reading resource file simpler and to be able to write a function description about it (simple copy&past) * callisto.cc: - added option for file-type * mjobs/MJOptimize.[h,cc], mjobs/MSequences.[h,cc], mjobs/MJCut.[h,cc], ganymed.[cc,rc], mhflux/MHEnergyEst.[h,cc]: - added to repository, but not yet to Makefile because there is still some work to be done. But whoever is interested in the new classes/program may already use it. * mhflux/MAlphaFitter.[h,cc]: - added option to choose the minimization value * mhflux/MHAlpha.cc: - replaced significance by minimization value * mhflux/MHEffectiveOnTime.cc: - use E-Option when fitting to improve error calculation by using Minos technique 2005/02/04 Markus Gaug * mjobs/MJCalibration.cc - found a "the `impossible' happened" when running callisto with a pure signal extractor --> MExtractTimeFastSpline has some problems with the management of the internal arrays. Replaced it by MExtractTimeHighestIntegral as default which is as good. * callisto.rc - use MExtractTimeAndChargeDigitalFilterPeakSearch as default instead of MExtractTimeAndChargeDigitalFilter. This extractor is now tested and checks for the positions of the pulse within the DAQ-window. 2005/02/04 Thomas Bretz * Makefile.rules: - fixed creation of main MDep.d * callisto.cc, merpp.cc, showlog.cc, showplot.cc, star.cc: - added commandline option --version * mbase/MFilter.cc: - changed default for 'GetRule' * mbase/MParContainer.cc: - simplified GetNewObject * mfbase/MF.cc: - if no conditional sign is found try to create MFilter-object * mraw/MRawEvtData.cc: - fixed the initialization of fABFlags in case maxid==0 which is the default. This caused MRawEvtPixelIter::HasABFlag to do unallowed access to memory for old root-files without the AB flag, because it assumed (due to size==1) that the data contains the ab flag * mraw/MRawEvtPixelIter.[h,cc]: - removed some obsolete debug comments - simplified HasABFlag * manalysis/MCerPhotPix.h: - removed the `!` again. It gave problems with the Mars display. We agreed that this is a minor problem because the structure of MCerPhot* will chnage soon in any case. 2005/02/04 Abelardo Moralejo * macros/starmc2.C - added to output missing container MConcentration. 2005/02/03 Thomas Bretz * mfbase/MFilterList.[h,cc]: - added new function AddToList(TCollection&) * mhbase/MFillH.cc: - print a warning if 'same'-option given without a corresponding existing tab * mhflux/MHAlpha.[h,cc]: - made time bins settable by user * mfileio/MWriteRootFile.cc: - fixed ReInit and a warning output when writing to memory 2005/02/03 Markus Gaug * mcalib/MCalibColorSet.[h,cc] - implement possibility to set colour explicitely (e.g. for MC). * msignal/MExtractTimeAndChargeDigitalFilter.cc - intialize fTimeShiftHiGain and fTimeShiftLoGain by default. * mjobs/MJPedestal.cc - in case, extractor is used, put the extractor into the tasklist, otherwise ranges do not get initialized correctly (wrong memory usage!). Use an event selector, however to not skip the Process. This is as fast as before and now safe for any kind of extractor * mcalib/MCalibrationCam.h * mcalib/MCalibrationTestCam.h * mcalib/MCalibrationTestCam.cc - initialize a missing array in InitAverageAreas * mraw/MRawEvtHeader.h - introduced Setter() of cal. pattern for Abelardo 2005/02/02 Markus Gaug * mcalib/MCalibrationChargeCam.cc - fixed small bug in the display of mean charges when low-gain was used. * msignal/MExtractor.cc - print the missing overlap between high-gain and low-gain in the Print() function - remove setting of fHiLoLast in PreProcess, otherwise cloned extractors do not work any more with windows exceeding the high-gain range. * mhcalib/MHCalibrationTestCam.[h,cc] * mhcalib/MHCalibrationTestTimeCam.[h,cc] - set proper probability limits for the fits * mcalib/MCalibrateData.cc - catch the case in which no interlaced cal. events are being sent by the pulser box. * mjobs/MJCalib.[h,cc] - put the data type enum in a new base class * mjobs/MJCalibTest.[h,cc] - re-name old class MJExtractCalibTest to MJCalibTest and make it compatible with the sequence-files. * mjobs/MJExtractCalibTest.[h,cc] - removed * mjobs/MJCalibrateSignal.cc - put a compiler warning about the default cal. to photo-electrons * callisto.cc - add new flag "--use-test" to enable the MJCalibTest facility (default: not used) 2005/02/01 Raquel de los Reyes * mjobs/MSequence.h - Added "Get" functions for the TArrays variables. 2005/02/01 Markus Gaug * mjobs/MJPedestal.[h,cc] * mjobs/MJCalibration.[h,cc] * mjobs/MJCalibrateSignal.[h,cc] * callisto.rc - put enum for data type. Can now set the data type (mc, raw, root) without running the data check. * mhcalib/MHCalibrationCam.cc - return kTRUE in PostProcess if GetNumExecutions is 0 * mcalib/MCalibrationChargeCalc.cc - return kTRUE in PostProcess if GetNumExecutions is 0 2005/02/01 Daniel Mazin * MPointingPosInterpolate.cc: - fixed bug to match the units of Ra and Decl in MPointingPos - fixed bug in handling of events with times outside of times from MDrive tree 2005/02/01 Thomas Bretz * showplot.cc: - another fix to make the batch mode working (you can use the batch mode to convert a root-file into another format) 2005/01/31 Thomas Bretz * mbase/MStatusDisplay.cc: - fixed handling of batch mode in GetCanvas(const TString &name) - don't skip already existing tabs in Display() 2005/01/31 Raquel de los Reyes * mjobs/MSequence.h - Added "Get" functions for some of the sequence.txt file parameters. 2005/01/31 Markus Gaug * mjobs/MJob.[h,cc] * mjobs/MJCalibrateSignal.[h,cc] * mjobs/MJCalibration.[h,cc] - move file type enum to base class * mjobs/MJCalibrateSignal.[h,cc] - allow also for direct setting of an MRunIter (not used in callisto). * mcalib/MCalibrationChargeCalc.[h,cc] - test also for pulser strength changes additionally to changes in colour. 2005/01/31 Abelardo Moralejo * mpointing/MSrcPosCalc.cc - Create only one instance of MAstroSky2Local for the transformations, instead of two identical ones, as it was before. 2005/01/30 Markus Gaug * mjobs/MJCalibration.cc * mjobs/MJPedestal.cc * mjobs/calibrationref_Nov04.rc * mhcalib/MHCalibrationRelTimeCam.[h,cc] - updated correct display of reference lines 2005/01/29 Markus Gaug * msignal/MExtractFixedWindowSpline.[h,cc] - fixed a bug occurring with overlapping windows between high-gain and low-gain * msignal/MExtractFixedWindowPeakSearch.cc - take out call to fSignals->Clear() which is already done in MTaskList. * msignal/MExtractTimeAndChargeDigitalFilterPeakSearch.[h,cc] - new extractor reducing the bias and solving the problem with the jumping pulse readout. 2005/01/28 Abelardo Moralejo * mpointing/MSrcPosCalc.cc - updated. Make it work as desired: obtain for each event the x,y position on the camera of a source whose celestial coordinates (J2000) have been set by the user in the container "MSourcePos" of type MPointingPos, added to the parameter list. If the container MSourcePos is not found, the center of the camera (or other fixed position x,y set in the parameter list by the user - in MSrcPosCam) is used as source position for all the events in the loop. 2005/01/28 Thomas Bretz * mjobs/MJCalibrateSignal.cc: - fixed that extract1,2,3 haven't been deleted if loop failed. - print tasklist also if loop failed. - added a undefined task (MTaskEnv "FinalFantasy") as last task to the event processing tasklist * callisto.rc: - added comments about "FinalFantasy" into call - added comment for obsolete resources as discussed yesterday evening: TimeUpperLimit * mbase/MMath.[h,cc], manalysis/MCerPhotPix.[h,cc], mpedestal/MPedPhotPix.h: - replaced TruncatePrecision by ReducePrecision (its simply a better name) * mbase/MParList.cc: - added a check to make 200%(!) sure that the container added to the list is a MParContainer (everything else could crash almost everything in Mars!) * mjobs/MJCalibrateSignal.cc, mjobs/MJCalibration.[h,cc], mjobs/MJPedestal.cc: - simplified the code in the WriteResult functions by using the new WriteContainer in MJob - removed the TObjArray from the MParList! It is NOT a MParContainer there are a lot of circumstance how this can crash Mars. I don't know why the compiler allowed for this. - unified WriteResult and WriteHists - split GetOutputFile into two functions for simplification * mjobs/MJCalibration.h: - copy the extractorcam name when copying the contents * mjobs/MJob.[h,cc]: - new member function WriteContainer to simplify code in derived classes * mpointing/MSrcPosCalc.[h,cc] - fixed the header according to Abelardo's changes - added the initialization of the pointers to the constructor 2005/01/28 Markus Gaug * msignal/MExtractTimeAndChargeDigitalFilter.cc - introduce a security check for the time fine adjustment in case, it is too large. * mcalib/MCalibConstCam.[h,cc] * mcalib/MCalibConstPix.h - new classes to allow display of changing cal. constants with the interlaced cal. events * mcalib/MCalibrationChargeCalc.cc - removed stopping of PostProcess in case that the evtloop is finished with interlaced cal. events * mcalib/MCalibrateData.[h,cc] - fill MCalibConstCam with update results (once per calib. consts update == every 10 sec.) - introduce check for size of calibration constant. In case, it is completetly out of range, set the MBadPixelsPix::IsUnsuitableRun * mjobs/MJCalibrateSignal.cc: - display one MHCamera more with changing conv. factors (only for interlaced cal. events) * mpedestal/MPedCalcFromLoGain.cc - set default for MExtractWinFirst from 15 to 17 because of the late cosmics signals in December 2005/01/28 Abelardo Moralejo * mtemp/mpadova/macros/trainsubsample.C - added # of events to be written in the output (instead of fraction of total). Moved MSrcPosCam in output from RunHeaders to Events tree. 2005/01/27 Daniel Mazin and Markus Gaug * mcalib/MCalibrateData.[h,cc] - derive this class from MCamEvent in order to be able to display evolution of conversion factors in case of interlaced cal. events * mpointing/MInterpolatePointingPos.[h,cc] - new class to interpolate pointing positions, adapted from a class by Marcos Lopez * mjobs/MJCalibrateSignal.[h,cc] - enabled the calibration of data with interlaced calibration events * msignal/MArrivalTime.[h,cc] * mcalib/MCalibrateRelTime.cc - removed Error of calibrated arrival time, as agreed on the last software calibration meeting yesterday * mjobs/MJCalibrateSignal.cc - add display to show histogramming of conversion factors - modify default calibration to equiv. photo-electrons - allow for setting of MC, Raw or Root-file type in callisto.rc * callisto.rc - updated conf. file 2005/01/27 Thomas Bretz * callisto.cc: - don't display starting pedestals when calibrating the signal * callisto.rc: - added some comments * star.rc: - according to Daniel M. we have agreed to change the default cleaning level to adapt it roughly to the new pedestal * manalysis/MCerPhotPix.[h,cc], mpedestal/MPedPhotPix.h: - as agreed in the current calibration meeting we truncate the precision of the stored floating point values to roughly 0.5% to gain storage space in the calibrated data (the gzip algorithm compresses this stuff nicely - we gain roughly 15%) * mhflux/MHFalseSource.cc, mjobs/MJCalibration.cc, mjobs/MJStar.cc: - added a comment * mjobs/MJCalibrateSignal.cc: - changed title of unsuitable plot - removed plot for calibrated fundamental pedestal as agreed in the current calibration meeting (we may change this to an option) * mjobs/MJPedestal.[h,cc]: - changed the name of the "PedDiff" plot to be consistent with the other tab-name - changed the options for the display - removed the dependancy of fDisplayType and the SetDataCheck option - added option kDisplayNone - renamed enums from k*Display to kDisplay* * mhist/MHCamEvent.cc: - trying to get rid of the Err_%p workaround. * manalysis/MCerPhotEvt.[h,cc]: - added some '!' signs in the comment line. This is quick hack to gain I/O speed and storage space. We will soon have new containers for the calibrated data and image cleaning information. - changed version number to 6 * mhist/MHCamera.cc: - added member function SetAllUsed 2005/01/26 Abelardo Moralejo * macros/mccalibrate.C - removed creation and writing out of MSrcPosCam. It is more flexible to add it in starmc2.C if needed (for wobble mode for instance). * mtemp/mpadova/macros/RanForestDISP.C - added possibility to set the number of hadrons read in for the training. Added some missing containers to output. - Fixed rule concerning the DISP, by adding parentheses. Remember that MHMatrix::AddColumn does not respect the usual precedence of operations! * mtemp/mpadova/macros/resize.C - added to output missing container MRawEvtHeader * macros/starmc2.C - added missing container MImagePar. Added possibility to set the source position on the camera (for the wobble mode). 2005/01/25 Abelardo Moralejo * macros/starmc2.C - modified to allow double (train / test) output, for g/h separation studies. Added several missing containers to output. 2005/01/25 Thomas Bretz * mcalib/MCalibrationIntensityChargeCam.cc: - fixed a lot of 'default argument'-warnings to make to code compile * mbase/MParContainer.[h,cc]: - moved the empty Reset() function into the source file and added a lot of comments - implemented new helper-functions: GetNewObject * mbase/MContinue.[h,cc]: - allow to use MFilter-classes as filter in ReadEnv * mbase/MTaskEnv.cc: - replaced some code by GetNewObject * mhbase/MFillH.cc: - handle DrawOption "same" to be able to draw to the same pad * mhbase/MH.[h,cc]: - added same-argument to DrawSame * mhbase/MH3.cc: - removed some obsolete comments - remove own drawing options before calling fHist->Draw * mimage/MHHillas.cc, mimage/MHImagePar.cc: - first try of implementing 'same' drawing option 2005/01/25 Markus Gaug * mcalib/MCalibrationPattern.[h,cc] * mcalib/MCalibrationPatternDecode.[h,cc] - New Decoder task for the calibration pattern from the digital modules * mraw/MRawEvtHeader.[h,cc] - remove decoding from this class * mcalib/MCalibrationIntensityHiLoCam.[h,cc] - remove, because one needs anyhow much more than one data file to get a reasonable conversion factor * mcalib/MCalibCalcFromPast.[h,cc] - remove MCalibrationIntensityHiLoCam * mbadpixels/MBadPixelsPix.h * mbadpixels/MBadPixelsCam.cc - changed one function name to GetUnsuitableCalLevel() * mjobs/MJCalibration.cc - replace all Y-titles with units "FADC counts" by "FADC cnts" and "FADC slices" by "FADC sl.", otherwise they range out of the canvas. * mcalib/MCalibrationChargeCalc.cc - ensure to set the color correctly in MCalibrationBlindCam * callisto.rc - put space for MJCalibrateSignal.ExtractSignal.HiGainFirst: 2 MJCalibrateSignal.ExtractSignal.HiGainLast: 16 2005/01/24 Abelardo Moralejo * manalysis/MMcCalibrationUpdate.cc - Adapted to changes in MCalibrateData from 2005/01/16: moved qepix.SetAvNormFFactor(1.) from Process() to ReInit(). Due to this, for the last week you may have found trouble running starmc.C and mccalibrate.C. 2005/01/24 Thomas Bretz * callisto.cc: - removed non-existing option from output * manalysis/MEnergyEstimate.[h,cc]: - added ReadEnv member function * mbase/MContinue.[h,cc]: - implementes AllowEmpty option to support doing nothing defined in resource file - added a first draft to allow usage of class-filters instead of rules * mbase/MMath.[h,cc]: - implemented a function suggested by Florian Goebel which reduces the precision of a float to ~0.5% which is usefull for data compression by gzip * mdata/MDataChain.[h,cc]: - implemented ReadEnv member function * mfbase/MF.cc: - a small enhancement to the output in ReadEnv * mhbase/MH3.cc: - fixed call to FindObject in Paint which caused a profile to be displayed incorrectly in case it was read from a file * mhflux/MHFalseSource.[h,cc]: - removed old obsolete unsused Significance functions - implemented ReadEnv member function - set false source binning only if BinningFalseSource is not default - check parlist for BinningAlpha * mjobs/MJCalibrateSignal.cc, mjobs/MJCalibration.cc, mjobs/MJPedestal.cc: - added an additional check and output if output-file could not be opened * mjobs/MJob.h: - added some Getter * mhbase/MBinning.[h,cc]. - added nen member functions + SetEdgesRaw + ReadEnv + Print * mhflux/MAlphaFitter.[h,cc]: - added new member function ReadEnv * mhflux/MHAlpha.cc: - fixed a problem when fitting without off-data * mbase/MStatusDisplay.cc: - implemented a further fix in DrawClonePad to make sure that the X-stuff doesn't get confused while still GetDrawOption returns the correct value 2005/01/24 Markus Gaug * msignal/MExtractTimeAndChargeDigitalFilter.cc - introduced security check for the times fine-tuning to catch outliers because of deviating pulse forms. * msignal/MExtractTime.cc * msignal/MExtractor.cc - lowered default high-gain saturation limit to 250 - removed Clear() for two results containers at beginning of Process() * msignal/MExtractor.h - Take fHiLoLast into the Clone() * msignal/MExtractedSignalPix.cc - change sign of default initializer to negative. 2005/01/23 Markus Gaug * mhcalib/MHCalibrationHiLoCam.[h,cc] - updated to new logain switch setting in MExtractTimeAndCharge - extract also high-gain vs. low-gain time difference * mhcalib/MHCalibrationCam.[h,cc] * mhcalib/MHCalibrationChargeCam.[h,cc] - updated reading of conf. values in ReadEnv * mhcalib/MCalibrationHiLoCam.[h,cc] * mhcalib/MCalibrationHiLoPix.[h,cc] * mhcalib/MCalibrationIntensityHiLoCam.[h,cc] - updated accordingly * mbadpixels/MBadPixelsCam.cc - removed some bugs in the Print() function 2005/01/22 Markus Gaug * mhcalib/MHCalibrationRelTimeCam.cc - display in the averaged times display the event-by-event averaged absolute arrival times instead of the rel. ones which do not make much sense. * mhcalib/MHCalibrationTestTimeCam.[h,cc] * mhcalib/MHCalibrationTestCam.[h,cc] - update to the latest changes in analysis chain. * mjobs/MJExtractCalibTest.[h,cc] - update to the latest changes in analysis chain. * mjobs/MJCalibration.cc - replace title of that times-averageing Tab from "RelTimes" by "Times". * macros/calibration.C - update to changes in MJExtractCalibTest 2005/01/21 Markus Gaug * msignal/MExtractTimeAndChargeDigitalFilter.cc * msignal/MExtractTimeAndChargeSlidingWindow.cc * msignal/MExtractTimeAndChargeSpline.cc - use the max. bin content for low-gain extraction * callisto.rc - add place for LoGainSwitch 2005/01/21 Florian Goebel * mfbase/MF.cc: - include a (TString) cast to make it compilable with gcc2.95.3 2005/01/21 Thomas Bretz * mpointing/MSrcPosFromModel.cc: - fixed crash in Process if no pointing model available * mpointing/MPointingPosCalc.h: - added missing initialization of data members * mastro/MObservatory.[h,cc]: - added ReadEnv member function * mbase/MTaskEnv.h: - added (=0) default to SetDefault 2005/01/20 Markus Gaug * mcalib/MCalibrationIntensityChargeCam.[h,cc] - added function to display fluctuations of a variable * mcalib/MCalibrationPix.cc - fixed small bug in High-gain mean error. * msignal/MExtractTimeAndCharge.[h,cc] - introduced high-gain maximum limit before extracting the low-gain 2005/01/20 Thomas Bretz * mbase/MContinue.[h,cc]: - added ReadEnv member function to support resource files * mbase/MEvtLoop.[h,cc]: - added a second arguemtn to reading of the resource file by name - added some checks when reding the resource file and the parameter list hasn't been setup * mbase/MParList.cc: - removed an obsolete output from ReadEnv * mfbase/MF.[h,cc]: - added ReadEnv member function to support resource files - added kAllowEpty flag to support skipping by resource files * mfbase/MFilterList.cc: - added a comment * mbase/MStatusDisplay.[h,cc]: - fixed Write to be compatible with root 4.02/00 - worked around a problem with reading the DrawOption correctly from a stored status display 2005/01/19 Thomas Bretz * mbase/MMath.cc: - added a comment to SignificanceLiMa, made by Daniel Mazin - also check for b==0 * mhflux/MAlphaFitter.[h,cc]: - fixed significance calculation in case of on-off data - added fScaleFactor * mhflux/MHAlpha.[h,cc], mhflux/MHFalseSource.cc: - handle scale factor in case of on-off observations * mjobs/MJPedestal.cc: - aligned screen output to 80col rule * mtrigger/MFTriggerPattern.[h,cc]: - assigned correct integers to enum - made sure that the enum is correctly handled in all function by applying a r-value to the condition 2005/01/19 Abelardo Moralejo * mtrigger/MFTriggerPattern.[cc,h] - Changed Bool_t arguments of all setters to new type Prescale_t defined by N. Galante (see below) 2005/01/19 Nicola Galante * mtrigger/MFTriggerPattern.[cc,h] - added in header enum Prescale_t { kUnPrescaled = kFALSE, kPrescaled = kTRUE }; - fixed a bug in Process, both fMaskRequiredUnprescaled and fMaskRequiredPrescaled are checked simultaneously. 2005/01/18 Markus Gaug * mcalib/MCalibColorSet.cc - fixed the remaining day of data without colour in project name neither in digital modules bits. * mpedestal/MPedCalcPedRun.[h,cc] - catch the continuous light runs with MRawRunHeader::fRunType == kRTCalibration to be recognized as effective pedestal runs. 2005/01/18 Thomas Bretz * mbase/MMath.cc: - added a check for s==0 in SignificanceLiMa, because otherwise the result is NaN * mfbase/MF.cc: - removed an obsolete debugging output from the latest changes * mhflux/MHAlpha.cc: - reset fHTime, too 2005/01/18 Nicola Galante * mtrigger/MFTriggerPattern.cc: - added parentesis to ensure bitwise operators priority with respect to logical operators. 2005/01/17 Thomas Bretz * manalysis/MEnergyEstimate.[h,cc]: - changed to be more general. Energy is now estimated from a rule (MDataChain) The default behaviour is still the same as before to copy the energy from MMcEvt * mbase/MTask.cc: - changed to write out the descriptor istead of the task-name only in Pre/PostProcess * mhbase/MH.cc: - initialize fSerialNumber and fNumExecutions in constructor * mhflux/MHFalseSource.cc: - according to a suggestion by Markus Mayer I have changed \\sigma_{max}=f to S_{max}=f\\sigma * mjobs/MJCalibrateSignal.cc: - as discussed with Markus and Abelardo fixed the MFTriggerPattern call. * mtrigger/MFTriggerPattern.cc, mtrigger/MTriggerPattern.cc, mtrigger/MTriggerPatternDecode.cc: - added some comment about file version * mbase/MFilter.h: - implemented new virtual function GetDataMember like in MData * mbase/MTask.[h,cc]: - when filter is added ass GetDataMember to branch list (should be obsolete, because filter is in the tasklist, but it should not hurt) * mfbase/MF.[h,cc], mfbase/MFDataChain.[h,cc], mfbase/MFDataMember.[h,cc], mfbase/MFilterList.[h,cc]: - implemented new function GetDataMember 2005/01/17 Markus Gaug * msignal/MExtractTimeAndChargeDigitalFilter.cc - remove a situation where the high-gain signal can be 0. * mtrigger/MTriggerPattern.h - fixed a bug in defining the trigger bit pattern (Have to start from 0 instead of 1) * mjobs/MJPedestal.cc * mjobs/MJCalibrateSignal.cc - fixed default extraction ranges. * callisto.rc - fixed default weights files for pedestal extraction for cosmcis * mcalib/MCalibrationChargeCalc.cc - removed program exit on occurrance of multiple colours without intensity calibration 2005/01/17 Nadia Tonello and Markus Gaug * mcalib/MCalibrationChargeCam.cc - some fit improvements in the function GetAveragedConvFADC2PhotPerArea 2005/01/16 Markus Gaug * mhcalib/MHCalibrationCam.[h,cc], mhcalib/MHCalibrationRelTimeCam.[h,cc], mhcalib/MHCalibrationChargeCam.[h,cc] - put overflow management and results camera initialization into base class * mcalib/MCalibrateData.[h,cc] - added possibility to re-normalize signal to equiv. photo-electrons ( SetSignalType(MCalibrateData::kPhe) ). Default is old version in photons - speed up Process by storing pre-calculated calibration constants in arrays (needed 40% of CPU time of the eventloop before, now: 23%) - added new pointer to different MCalibrationChargeCam used for updates - added possibility to update the conversion factors using the MCalibrationChargeCam stored in fCalibUpdate. - added Print() function * mcalib/MCalibCalcFromPast.[h,cc] - committed final version, now also in the Makefile * mjobs/MJCalibrateSignalFromOutside.[h,cc], macros/calibration.C - committed final version, now able to calibrate interlaced cal. events. 2005/01/14 Hendrik Bartko * msignal/calibration_weights_UV.dat - fixed a small bug in the noise autocorrelation of the AB-noise * msignal/calibration_weights_blue.dat - new weights file for blue calibration pulses * cosmics_weights.dat - fixed a small bug in the noise autocorrelation of the AB-noise 2005/01/14 Markus Gaug * msignal/MExtractTimeAndChargeDigitalFilter.cc - added a small acceleration of the program, tested by Hendrik and me. * mpedestal/MPedCalcFromLoGain.cc - fixed one warning output which was not a real warning. * mcalib/MCalibrationChargeCam.cc - improved the function to calculate a mean conversion factor over the whole camera including a fit to the values. * mpedestal/MPedCalcPedRun.[h,cc] - undo some changes introduced by TB on 2/12/04 which had made the use of interlaced pedestal events impossible again. - Use now the new class MTriggerPattern directly to recognize an interlaced pedestal event. 2005/01/14 Thomas Bretz * callisto.cc: - fixed a typo in output * manalysis/MGeomApply.cc: - removed some old code already in comments - added possibility to switch off automatic processing (used if two different geometries around) * manalysis/MMultiDimDistCalc.cc, mhbase/MHMatrix.[h,cc], mranforest/MRanForestCalc.cc, mtools/MHSimulatedAnnealing.[h,cc], mtools/MSimulatedAnnealing.h: - added include of TVector because in newer root version it is not included from TMatrix anymore * mbase/BaseLinkDef.h, mbase/MMath.[h,cc]: - to stick to the convention of TMath in newer root versions MMath changed from a class to a namespace * mbase/MEvtLoop.[h,cc]: - to support newer root version added a second Write-function with a const qualifier. * mdata/MDataChain.cc: - changed access to TMath for newer root versions * mfileio/MChain.[h,cc]: - implemented a workaround for teh changed LoadTree definition in newer root-versions * mfileio/MReadTree.cc: - fixed a bug in CheckBranchSize caused some warning to be displayed * mhflux/MHAlpha.cc: - removed check for fResult in PostProcess (it is always there) * msignal/MExtractTimeFastSpline.cc: - fixed delete --> delete[] * mbadpixels/MBadPixelsCalc.cc: - slight change to some output * mbase/MTaskEnv.h: - set name of default task when pointer is given * mjobs/MJCalibrateSignal.cc: - fixed handling of extraction range for various cases - fixed handling in case no arrival times are calculated * mjobs/MJCalibration.cc: - write at least a default arrival time calibration container to make further processing easier * mjobs/MJPedestal.[h,cc]: - fixed handling of extraction range for various cases 2005/01/14 Abelardo Moralejo * mtemp/mpadova/macros/trainsubsample.C, RanForestDISP.C - added. Two macros used in the analysis of real wobble mode data. 2005/01/14 Daniela Dorner * macros/sql/filldotrun.C - added new arehucas-verions and changed code accordingly 2005/01/13 Abelardo Moralejo * macros/starmc.C - Added (commented) lines for the case of gamma MC source off-axis (wobble mode). Changed default extractor to MExtractFixedWindowPeakSearch. 2005/01/13 Raquel de los Reyes * callisto.rc - introduced several configuration lines (format: "class".DataCheck: No) to allow callisto to run with rawfiles. Necessary for the datacheck. 2005/01/13 Markus Gaug * mcalib/MCalibColorSet.cc - fixed runs 45605-45609 * msignal/MExtractor.h - take out the variable fHiLoLast from the streamer. Will be initialized in the ReInit(), if needed * msignal/MExtractor.cc - Initialized fHiLoLast to 0. Otherwise, a second eventloop with the same extractor may have that variable set to a certain value, even if not desired. The ReInit() fixes fHiLoLast, if different from 0. * mpedestal/MExtractPedestal.cc * mpedestal/MPedCalcPedRun.cc * mpedestal/MPedCalcFromLoGain.cc - fix the output of the print to the correct value for the case that the extractor is used. 2005/01/13 Thomas Bretz * callisto.rc: - fixed some typos * mbase/MLog.cc: - unset DEBUG defined unintentionally * msignal/MExtractTimeAndChargeDigitalFilter.cc: - removed printing Weights in InitArrays, because otherwise the output of a full data calibration is totally crowded with numbers. Having the weights-file name on the display is perfectly enough. 2005/01/12 Markus Gaug * mcalib/MCalibrationIntensityRelTimeCam.cc - added fit to improve averageing of the obtained results 2005/01/12 Thomas Bretz * manalysis/MMatrixLoop.cc: - changed name to MRead because it now derives from MRead * mbase/MEvtLoop.[h,cc]: - implemented an option not to cascade the status display to the parameter list in PreProcess * mhflux/MHAlpha.cc: - changed name of "Significance" to "MinimizationValue" - return -significance to have a value being minimized * mhist/MHCamera.cc: - fixed output of text in legend * mhist/MHEvent.[h,cc]: - implemented new options for calibrated pedestals * mmain/MEventDisplay.cc: - fixed to support latest changes in MJCalibrateSignal * mpedestal/MPedPhotCam.cc: - added new options in GetPixelContent (4 and 5) to support a correct camera display * mjobs/MJCalibrateSignal.cc: - fixed display of calibrated pedestal and pedestal rms - changed order of plots. Now all interpolated values (means all calibrated values which are bad-pixel treated) are displayed behind the unsuitable pixels. * mjobs/MJ*.cc: - corrected all wrong %06d to %08d to fit the number of digits in run-numbers 2005/01/11 Abelardo Moralejo * mjobs/Makefile - added missing include -I ../mtrigger 2005/01/11 Thomas Bretz * callisto.cc, callisto.rc: - changed such, that all three kinds of pedestals are calcualted (usefull for studies) * manalysis/MMatrixLoop.[h,cc]: - derived from MRead - implemented some basic functions from MRead * mfilter/MFCosmics.[h,cc]: - allow setting of name of MPedestalCam * mhbase/MBinning.[h,cc]: - added SetEdges taking MParList as input * mhflux/MHAlpha.cc: - use new function from MBinning * mjobs/MJCalibrateSignal.[h,cc]: - changed to calculate all three kinds of pedestals - added filters for trigger pattern and illuminated events * mjobs/MJPedestal.cc: - give different names to tabs with different pedestals * mjobs/MJStar.cc: - on request changed used pedestal from "FromExtractor" to "FromExtractorRndm" * mtrigger/MTriggerPattern.h: - added Reset function * mtrigger/MTriggerPatternDecode.[h,cc]: - added using file format version number 2005/01/11 Markus Gaug * mbadpixels/MBadPixelsPix.cc - updated documentation * mcalib/MCalibrationChargeCalc.cc - make pixels with deviating number of phes unreliable instead of unsuitable (this was already thought so, but missed to modify at one place). * mhcalib/MHCalibrationCam.[h,cc] - add possible flag 'kInterlaced': default: kFALSE (like before) - added pointer to MRawEvtHeader to deny cosmics events in case of 'interlaced' flag is set. No changes for 'normal' calibration 2005/01/10 Benjamin Riegel * mreport/MReportStarguider.cc, mreport/MReportStarguider.h - added two classes for implementing starguider-data * mreport/ReportLinkDef.h - added class MReportStarguider to be linked: #pragma link C++ class MReportStarguider+; * mreport/Makefile - added file MReportStarguider.cc * merpp.cc - added two containers ( MReportStarguider, MTimeStarguider ) and added MReportStarguider to the list: w->AddContainer("MReportStarguider", "Starguider"); w->AddContainer("MTimeStarguider", "Starguider"); r->AddToList("MReportStarguider"); 2005/01/10 Markus Gaug * mcalib/MCalibColorSet.cc - return kFALSE for CL-run instead of kTRUE * mcalib/MCalibrationChargeCalc.cc - stop program in case that multiple colours are found in same file without intensity calibration * mbadpixels/MBadPixelsPix.h - added two new possible UnCalibrated_t flags for the hi-lo calibration * macros/calibration.C - add the calls to: MArray::Class()->IgnoreTObjectStreamer(); MParContainer::Class()->IgnoreTObjectStreamer(); in main. * msignal/MExtractor.h - added Getter for fOffsetLoGain (was still missing) * mhcalib/MHCalibrationChargeCam.[h,cc] - remove pixels with histogram overflow only if their percentage passes a certain limit (default: 0.5%). Before, every overflow lead to an unsuitable pixel. * msignal/MExtractTimeAndChargeDigitalFilter.[h,cc] - implemented changes suggested by T.B. to speed up calculations - take fNameWeightsFile into the streamer, otherwise the Clone() will always create an extractor with cosmic's weights. - set fOffsetLoGain to a slighly higher value. The DF seems to have a different offset since it uses different pulse shapes and thus sightly different time definitions. 2005/01/10 Thomas Bretz * mhvstime/MHVsTime.cc: - fixed a compiler error for gcc 2.95.3, see Mantis bug # 157 * callisto.cc: - changed such, that the calculated pedestal is not random anymore - added code to calculate the pedestal also with randomization, but this code is for the moment commented out. * callisto.rc: - fixed naming of pedestal calculation * mbadpixels/MBadPixelsCalc.cc: - added a second check which compares the pedestal rms with the variance of the pedestal rms in the same sector * mjobs/MJCalibrateSignal.[h,cc]: - changed to calculate the pedestal from extractor without randomization - added code to calculate the pedestal also with randomization, but this code is for the moment commented out. * mjobs/MJCalibration.cc: - made sure that pedcam always has the correct name (FIXME? Print a warning if it has the wrong name) * mjobs/MJPedestal.[h,cc]: - changed such, that it allows the calculation of pedestals in three different ways (fundamental, fromextractor, fromextractorrndm) - therefor removed SetExtractorResolution and added + void SetExtractionFundamental() + void SetExtractionWithExtractorRndm() + void SetExtractionWithExtractor() * mjobs/MJStar.cc: - changed/fixed the input name of the MPedPhotCam used in the image cleaning * mraw/MRawFileRead.[h,cc]: - changed return type of OpenNextFile - in some cases return kERROR in OpenNextFile to abort the Processing with an error * mraw/MRawRunHeader.cc: - call a wrong file format version ERROR now * mhflux/MAlphaFitter.[h,cc]: - make sure that resetted values are returned if fit failed - set default scaling too kOffRegion * mhflux/MHAlpha.cc: - some small fixes to handling of MHAlphaOff * mhflux/MHFalseSource.[h,cc]: - implemented possible usage of MHFalsSourceOff for On-Off-Analysis - updated display accordingly - updated fit accordingly - removed catalog temporarily from plots until I found the reason for the strange crashes * mbadpixels/MBadPixelCalc.[h,cc]: - implemented the possibility to check the pedestal rms against the variance of the pedstal rms, too. The option is curretly switched off. - enahanced informal output in PreProcess * mbase/MTaskList.cc: - a little change to some output 2005/01/10 Wolfgang Wittek * mfbase/MFEventSelector2.cc - check whether filter exists before calling filter->CallPreProcess(parlist) 2005/01/08 Markus Gaug * mhcalib/MHCalibrationHiLoCam.[h,cc] * mcalib/MCalibrationHiLoCam.[h,cc] * mcalib/MCalibrationHiLoPix.[h,cc] * mcalib/MIntensityCalibrationHiLoCam.[h,cc] * mhcalib/Makefile, mcalib/Makefile, mhcalib/HCalibLinkDef.h, mcalib/CalibLinkDef.h - new classes for calibration of conversion high-gain vs. low-gain * msignal/MExtractedSignalPix.[h,cc] - added data member fChisquare, set to -1. by Clear() and Reset() - raised version number by 1 * msignal/MExtractedSignalCam.[h,cc] - added data member fNdf, set to -1 by default - new function: GetProb(const Int_t pixidx) to be called to calculate the joint probability of Chisquare of pixel "pixidx" and fNdf - added documentation of data members - raised version number by 1 * mhcalib/MHCalibrationChargeCam.cc - strengthened default histogram limits a bit, should accelerate the calibration by 20%. * mjobs/MJCalibrateSignalFromOutside.cc - fixed two lines to compile MCalibrateData with the recent changes by TB * msignal/MExtractTimeAndChargeDigitalFilter.cc - fixed two bugs introduced yesterday by TB. * msignal/MExtractTimeAndChargeSpline.cc * msignal/MExtractTimeAndChargeSlidingWindow.cc - adopt part of TB's speed accelerations into these classes * msignal/MExtractTimeAndCharge.cc - fix the low-gain extraction window for the case that the high-gain is saturated. Was skipped so far. 2005/01/07 Markus Gaug * msignal/MExtractFixedWindowPeakSearch.[h,cc] - catch the case that more than 90% of the pixels have saturated signals and fix the extraction window from the occurrance of saturation, then. Important for high-intensity calibration events. * msignal/MExtractor.cc * msignal/MExtractTime.cc * msignal/MExtractTimeAndCharge.cc - added some documentation * msignal/MExtractTime.[h,cc] - moved the empty function FindTimeHiGain() and FindTimeLoGain() to the header-file. 2005/01/07 Abelardo Moralejo * mbase/MLog.h - Added #include "TSystem.h", otherwise gSystem is not recognized in Mac OSX. * manalysis/MMakePadHistograms.cc - Changed badcalc.SetNamePedPhotContainer to badcalc.SetNamePedPhotCam 2005/01/07 Thomas Bretz * mbadpixels/MBadPixelsCalc.[h,cc], macros/ONOFFAnalaysis.C: - replaced PedPhotContainer by PedPhotCam for consistency * mbase/MLog.[h,cc]: - return *this in Seperator() * mbase/MPrint.[h,cc]: - use new separator manipulator in PreProcess - fixed a type: separator instead of seperator * mfileio/MReadTree.[h,cc]: - added a check for branch->IsAutoDelete() in Notify() * mpedestal/MExtractPedestal.[h,cc]: - added new option 'fRandomCalculation' be used to switch on-/off- randomization in extractors, the default should be like before - added Process() calling Calc() * mpedestal/MPedCalcFromLoGain.[h,cc], mpedestal/MPedCalcPedRun.[h,cc]: - renamed Process() to Calc() * Makefile: - removed macros/calibration.C, which seems to have been unintantionally introduced. * manalysis/Makefile: - removed unintantionally introduced wrong include * msignal/MExtractTimeAndChargeDigitalFilter.cc: - a small acceleration discussed with Hendrik by replacing a counter in a loop by pointer arithmetics * mraw/MRawEvtPixelIter.cc: - fixed a bug in GetMaxIdxHiLoGain which caused the loop to read one byte behind the end of the array - fixed HasLoGain() which really did weired things, means accessing sometimes memory somewhere. This could theoretically result in assigning the wrong lo-gains to the wrong pixels. * mtrigger/MTriggerPattern.[h,cc], mtrigger/MTriggerPatternDecode.[h,cc], mtrigger/MFTriggerPattern.[h,cc]: - added * mtrigger/Makefile, mtrigger/TriggerLinkDef.h: - added MTriggerPattern, MTriggerPatternDecode and MFTriggerPattern * manalysis/MEnergyEstParam.h: - added a new function SetVariables calling SetCoeff * mcalib/MCalibrateData.[h,cc]: - removed data members for container names - added new lists for container names - allow to calibrate more than one pedestal container at the same time * mjobs/MJCalibrateSignal.cc: - changed accordingly 2005/01/05 Thomas Bretz * mcalib/MCalibrationBlindPix.cc, mcalib/MCalibrationChargeCalc.cc, mhcalib/MHCalibrationRelTimeCam.cc: - made some output lines fit into convinience window of 80 col * mhist/MHCamEvent.cc: - make sure that x-axis has correct title * msignal/MArrivalTimePix.cc: - init error to -1 which is a obviously non valid value - fixed IsValid() which gave wrong results * msignal/MExtractTimeAndCharge.cc, msignal/MExtractedSignalPix.cc: - made sure that LoGain is flagged non-valid if no lo-gain exists - push time back at the edge of the allowed limits if outside * mbase/MGList.[h,cc]: - introduced new functions Delete and DeletePictures - SetBit(kMustCleanup) in constructor. Otherwise it is not correctly removed from ListOfCleanups * mbase/MLog.cc: - SetBit(kMustCleanup) if adding a plugin to make sure it is cleaned from the list * mbase/MParContainer.[h,cc]: - replaced return type of GetDescriptor by TString. The old version was terribly wrong! The returned memory wasn't removed as soon as the function returned. * mbase/MStatusDisplay.[h,cc]: - for security (thread safty) replaced all Form() by MString::Form() - implemented a more secure scheme of Closing (Clone()) this was a hint given by valgrind - set kMustCleanup for all new object in ClonePad not only kCanDelete - fixed some lines in pulldown-menus - add TPads to ListOfCleanups in ClonePad (workaround!) * mbase/MString.[h,cc]: - implemented a new static Form() function returning a copy of the result * mbase/MTask.[h,cc]: - replaced return type of GetDescriptor by TString. The old version was terribly wrong! The returned memory wasn't removed as soon as the function returned. - Made GetDescriptor thread safe using MString::Form * mfileio/MWriteRootFile.cc: - Use GetDescriptor().Data() when using any kind of printf function * mhbase/MFillH.cc: - replaced string concatenation in all constructors by a Form (also suggested by valgrind) * mhcalib/MHCalibrationRelTimeCam.cc: - made some output fit into 80col boundary 2005/01/03 Thomas Bretz (HAPPY NEW YEAR) * mfht: - added new directory for hexagonal fourier transformation * mfht/HftIncl.h, mhft/HftLinkDef.h, mhft/MGeomCamMagicXT.[h,cc], mhft/MGeomCamMagicEnhance.[h,cc], mhft/MHexgaonalFT.[h,cc], mhft/MHexagonalFreqSpace.[h,cc], mhft/MHexagonalFTCalc.[h,cc], mhft/Makefile: - added * macros/extendcam.C: - added: tutorial for MGeomCamExtend * macros/hft.C: - added: tutorial for MHexgonalFTCalc * macros/dohtml.C: - updated * macros/rootlogon.C: - updated * Makefile: - mhft added * mbase/MParContainer.cc, mbase/MLog.cc: - added a pre-compiler option for destructor debugging * mbase/MTaskList.[h,cc]: - added new function Replace * mdata/MDataChain.cc, mfbase/MF.cc: - shortened some output * mdata/MDataArray.[h,cc]: - added new function FindRule * mfileio/MReadTree.[h,cc]: - enhanced functionality to be able to read a TTree stored in memory instead of a file. Therefor introduced fTree which is now the pointer used and replaced fChain where TTree and TChain have common behaviour. Where they behave uncommon new code for the new case has been added. * mfileio/MWriteRootFile.[h,cc]: - enhanced functionality to be able to write a TTree into memory instead of a file. This were maily bugfixes for the case fOut==0, which must be handled correctly. Becarefull a tree filles without a file is not deleted automatically! * mhbase/MBinning.h: - added copy constructor - fixed buggy SetEdges(MBinning&) which didn't work * mhbase/MHMatrix.cc: - when adding a new rule check first if the same rule already exists * mhflux/MAlphaFitter.[h,cc]: - added new functionality to support on-off analysis - didn't touch existing code * mhflux/MHAlpha.[h,cc]: - added new functionality to support on-off analysis - replaced Fit() calls by newer function calls - added DrawAll - PRELIMINARY - fixed a bug when projecting - may be the reson for some strange crashes * mcalib/MCalibColorSet.cc: - fixed a stupid bug introduced last year, which caused MCalibColorSet in some circumstances to stop the eventloop when it shouldn't * mjobs/MSequence.cc: - expand path names