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Last change on this file was 7375, checked in by tbretz, 19 years ago
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1	/* ======================================================================== *\
2	!
3	! *
4	! * This file is part of MARS, the MAGIC Analysis and Reconstruction
5	! * Software. It is distributed to you in the hope that it can be a useful
6	! * and timesaving tool in analysing Data of imaging Cerenkov telescopes.
7	! * It is distributed WITHOUT ANY WARRANTY.
8	! *
9	! * Permission to use, copy, modify and distribute this software and its
10	! * documentation for any purpose is hereby granted without fee,
11	! * provided that the above copyright notice appear in all copies and
12	! * that both that copyright notice and this permission notice appear
13	! * in supporting documentation. It is provided "as is" without express
14	! * or implied warranty.
15	! *
16	!
17	!
18	! Author(s): Thomas Bretz, 1/2004 <mailto:tbretz@astro.uni-wuerzburg.de>
19	! Author(s): Markus Gaug, 02/2004 <mailto:markus@ifae.es>
20	!
21	! Copyright: MAGIC Software Development, 2000-2005
22	!
23	!
24	\* ======================================================================== */
25
26	/////////////////////////////////////////////////////////////////////////////
27	//
28	// MJCalibration
29	//
30	// Do one calibration loop over serious of runs with the same pulser
31	// colour and the same intensity. The following containers (rectangular) and
32	// tasks (ellipses) are called to produce an MCalibrationChargeCam and to
33	// update the MCalibrationQECam: (MCalibrate is not called from this class)
34	//
35	//Begin_Html
36	/*
37	<img src="images/CalibClasses.gif">
38	*/
39	//End_Html
40	//
41	// Different signal extractors can be set with the command SetExtractor()
42	// Only extractors deriving from MExtractor can be set, default is MExtractSlidingWindow
43	//
44	// Different arrival time extractors can be set with the command SetTimeExtractor()
45	// Only extractors deriving from MExtractTime can be set, default is MExtractTimeHighestIntegral
46	//
47	// At the end of the eventloop, plots and results are displayed, depending on
48	// the flags set (see DisplayResult())
49	//
50	// If the flag SetFullDisplay() is set, all MHCameras will be displayed.
51	// if the flag SetDataCheckDisplay() is set, only the most important ones are displayed
52	// Otherwise, (default: SetNormalDisplay()), a good selection of plots is given
53	//
54	// The absolute light calibration devices Blind Pixel and PIN Diode can be switched on
55	// and off with the commands:
56	//
57	// - SetUseBlindPixel(Bool_t )
58	// - SetUsePINDiode(Bool_t )
59	//
60	// See also: MHCalibrationChargePix, MHCalibrationChargeCam, MHGausEvents
61	// MHCalibrationChargeBlindPix, MHCalibrationChargePINDiode
62	// MCalibrationChargePix, MCalibrationChargeCam, MCalibrationChargeCalc
63	// MCalibrationBlindPix, MCalibrationChargePINDiode,
64	// MCalibrationQECam, MBadPixelsPix, MBadPixelsCam
65	//
66	// If the flag RelTimeCalibration() is set, a calibration of the relative arrival
67	// times is also performed. The following containers (rectangular) and
68	// tasks (ellipses) are called to produce an MCalibrationRelTimeCam used by
69	// MCalibrateTime to correct timing offset between pixels: (MCalibrateTime is not
70	// called from this class)
71	//
72	//Begin_Html
73	/*
74	<img src="images/RelTimeClasses.gif">
75	*/
76	//End_Html
77	//
78	// Different arrival time extractors can be set directly with the command
79	// SetTimeExtractor(MExtractor *)
80	//
81	// Resource file entries are case sensitive!
82	//
83	// See also: MHCalibrationRelTimePix, MHCalibrationRelTimeCam, MHGausEvents
84	// MCalibrationRelTimePix, MCalibrationRelTimeCam
85	// MBadPixelsPix, MBadPixelsCam
86	//
87	/////////////////////////////////////////////////////////////////////////////
88	#include "MJCalibration.h"
89
90	#include <TFile.h>
91	#include <TF1.h>
92	#include <TStyle.h>
93	#include <TCanvas.h>
94	#include <TSystem.h>
95	#include <TLine.h>
96	#include <TLatex.h>
97	#include <TLegend.h>
98	#include <TRegexp.h>
99	#include <TPaveText.h>
100	#include <TPaveStats.h>
101	#include <TEnv.h>
102
103	#include "MLog.h"
104	#include "MLogManip.h"
105
106	#include "MRunIter.h"
107	#include "MSequence.h"
108	#include "MParList.h"
109	#include "MTaskList.h"
110	#include "MEvtLoop.h"
111
112	#include "MHCamera.h"
113	#include "MGeomCam.h"
114
115	#include "MPedestalCam.h"
116	#include "MCalibColorSteer.h"
117
118	#include "MCalibrationIntensityChargeCam.h"
119	#include "MCalibrationIntensityBlindCam.h"
120	#include "MCalibrationIntensityRelTimeCam.h"
121	#include "MCalibrationIntensityQECam.h"
122
123	#include "MCalibrationPatternDecode.h"
124	#include "MCalibrationCam.h"
125	#include "MCalibrationHiLoCam.h"
126	#include "MCalibrationHiLoPix.h"
127	#include "MCalibrationQECam.h"
128	#include "MCalibrationQEPix.h"
129	#include "MCalibrationChargeCam.h"
130	#include "MCalibrationChargePix.h"
131	#include "MCalibrationChargePINDiode.h"
132	#include "MCalibrationBlindPix.h"
133	#include "MCalibrationBlindCam.h"
134	#include "MCalibrationBlindCamOneOldStyle.h"
135	#include "MCalibrationBlindCamTwoNewStyle.h"
136	#include "MCalibrationBlindCamThreeNewStyle.h"
137	#include "MCalibrationChargeCalc.h"
138	#include "MCalibColorSet.h"
139	#include "MCalibrationRelTimeCam.h"
140	#include "MCalibrationRelTimeCalc.h"
141
142	#include "MHGausEvents.h"
143	#include "MHCalibrationCam.h"
144	#include "MHCalibrationChargeCam.h"
145	#include "MHCalibrationChargeBlindCam.h"
146	#include "MHCalibrationChargePINDiode.h"
147	#include "MHCalibrationRelTimeCam.h"
148	#include "MHCalibrationPix.h"
149
150	#include "MReadMarsFile.h"
151	#include "MPedCalcPedRun.h"
152	#include "MRawFileRead.h"
153	#include "MGeomApply.h"
154	#include "MTaskEnv.h"
155	#include "MBadPixelsMerge.h"
156	#include "MBadPixelsCam.h"
157	#include "MExtractTime.h"
158	#include "MExtractor.h"
159	#include "MExtractPINDiode.h"
160	#include "MExtractBlindPixel.h"
161	#include "MExtractSlidingWindow.h"
162	#include "MExtractTimeHighestIntegral.h"
163	#include "MFCosmics.h"
164	#include "MFTriggerPattern.h"
165	#include "MContinue.h"
166	#include "MFillH.h"
167
168	#include "MTriggerPatternDecode.h"
169
170	#include "MArrivalTimeCam.h"
171
172	#include "MStatusDisplay.h"
173
174	ClassImp(MJCalibration);
175
176	using namespace std;
177
178	const Int_t MJCalibration::gkIFAEBoxInaugurationRun = 20113;
179	const Int_t MJCalibration::gkSecondBlindPixelInstallation = 31693;
180	const Int_t MJCalibration::gkSpecialPixelsContInstallation = 34057;
181	const Int_t MJCalibration::gkThirdBlindPixelInstallation = 43308;
182	const TString MJCalibration::fgReferenceFile = "mjobs/calibrationref.rc";
183	const TString MJCalibration::fgHiLoCalibFile = "mjobs/hilocalib_df46.root";
184
185	// --------------------------------------------------------------------------
186	//
187	// Default constructor.
188	//
189	// - fExtractor to NULL, fTimeExtractor to NULL, fColor to kNONE,
190	// fDisplay to kNormalDisplay, kRelTimes to kFALSE, kataCheck to kFALSE, kDebug to kFALSE,
191	// kIntensity to kFALSE
192	// - SetUseBlindPixel()
193	// - SetUsePINDiode()
194	//
195	MJCalibration::MJCalibration(const char name, const char title)
196	: fExtractor(NULL), fTimeExtractor(NULL),
197	fColor(MCalibrationCam::kNONE), fDisplayType(kDataCheckDisplay),
198	fGeometry("MGeomCamMagic")
199	{
200
201	fName = name ? name : "MJCalibration";
202	fTitle = title ? title : "Tool to create the calibration constants for one calibration run";
203
204	SetHiLoCalibration();
205	SetRelTimeCalibration();
206	SetDebug(kFALSE);
207	SetIntensity(kFALSE);
208
209	SetReferenceFile();
210	SetHiLoCalibFile();
211
212	fConvFADC2PheMin = 0.;
213	fConvFADC2PheMax = 1.5;
214	fConvFADC2PhotMin = 0.;
215	fConvFADC2PhotMax = 10.;
216	fQEMin = 0.;
217	fQEMax = 0.3;
218	fArrivalTimeMin = 1.;
219	fArrivalTimeMax = 10.;
220	fTimeOffsetMin = -3.;
221	fTimeOffsetMax = 3.;
222	fTimeResolutionMin = 0.;
223	fTimeResolutionMax = 1.;
224
225	fRefFADC2PheInner = 0.14;
226	fRefFADC2PheOuter = 0.4;
227	fRefConvFADC2PheInner = 0.14;
228	fRefConvFADC2PheOuter = 0.52;
229	fRefQEInner = 0.18;
230	fRefQEOuter = 0.12;
231	fRefArrivalTimeInner = 4.5;
232	fRefArrivalTimeOuter = 5.0;
233	fRefArrivalTimeRmsInner = 0.5;
234	fRefArrivalTimeRmsOuter = 0.5;
235	fRefTimeOffsetInner = -0.23;
236	fRefTimeOffsetOuter = 0.39;
237	fRefTimeResolutionInner = 0.153;
238	fRefTimeResolutionOuter = 0.128;
239
240	}
241
242	void MJCalibration::DrawTab(MParList &plist, const char cont, const char name, Option_t *opt)
243	{
244	TObject *obj = plist.FindObject(cont);
245	if (!obj)
246	return;
247
248	fDisplay->AddTab(name);
249	obj->DrawClone(opt);
250	}
251
252	// --------------------------------------------------------------------------
253	//
254	// Display the results in MStatusDisplay:
255	//
256	// - Add "Calibration" to the MStatusDisplay title
257	// - Retrieve the MGeomCam from MParList
258	// - Initialize the following MHCamera's:
259	// 1) MCalibrationPix::GetMean()
260	// 2) MCalibrationPix::Sigma()
261	// 3) MCalibrationChargePix::GetRSigma()
262	// 4) MCalibrationChargePix::GetRSigmaPerCharge()
263	// 5) MCalibrationChargePix::GetPheFFactorMethod()
264	// 6) MCalibrationChargePix::GetMeanConvFADC2Phe()
265	// 7) MCalibrationChargePix::GetMeanFFactorFADC2Phot()
266	// 8) MCalibrationQEPix::GetQECascadesFFactor()
267	// 9) MCalibrationQEPix::GetQECascadesBlindPixel()
268	// 10) MCalibrationQEPix::GetQECascadesPINDiode()
269	// 11) MCalibrationQEPix::GetQECascadesCombined()
270	// 12) MCalibrationQEPix::IsAverageQEFFactorAvailable()
271	// 13) MCalibrationQEPix::IsAverageQEBlindPixelAvailable()
272	// 14) MCalibrationQEPix::IsAverageQEPINDiodeAvailable()
273	// 15) MCalibrationQEPix::IsAverageQECombinedAvailable()
274	// 16) MCalibrationChargePix::IsHiGainSaturation()
275	// 17) MCalibrationPix::GetHiLoMeansDivided()
276	// 18) MCalibrationPix::GetHiLoSigmasDivided()
277	// 19) MCalibrationChargePix::GetHiGainPickup()
278	// 20) MCalibrationChargePix::GetLoGainPickup()
279	// 21) MCalibrationChargePix::GetHiGainBlackout()
280	// 22) MCalibrationChargePix::GetLoGainBlackout()
281	// 23) MCalibrationPix::IsExcluded()
282	// 24) MBadPixelsPix::IsUnsuitable(MBadPixelsPix::kUnsuitableRun)
283	// 25) MBadPixelsPix::IsUnsuitable(MBadPixelsPix::kUnreliableRun)
284	// 26) MBadPixelsPix::IsUncalibrated(MBadPixelsPix::kHiGainOscillating)
285	// 27) MBadPixelsPix::IsUncalibrated(MBadPixelsPix::kLoGainOscillating)
286	// 28) MCalibrationChargePix::GetAbsTimeMean()
287	// 29) MCalibrationChargePix::GetAbsTimeRms()
288	//
289	// If the flag SetFullDisplay() is set, all MHCameras will be displayed.
290	// if the flag SetDataCheckDisplay() is set, only the most important ones are displayed
291	// and otherwise, (default: SetNormalDisplay()), a good selection of plots is given
292	//
293	void MJCalibration::DisplayResult(MParList &plist)
294	{
295	if (!fDisplay)
296	return;
297
298	TString drawoption = "nonew ";
299	if (fDisplayType == kDataCheckDisplay)
300	drawoption += "datacheck";
301	if (fDisplayType == kFullDisplay)
302	drawoption += "all";
303
304	if (IsUsePINDiode())
305	DrawTab(plist, "MHCalibrationChargePINDiode", "PINDiode", drawoption);
306	if (IsUseBlindPixel())
307	DrawTab(plist, "MHCalibrationChargeBlindCam", "BlindPix", drawoption);
308	if (IsRelTimes())
309	DrawTab(plist, "MHCalibrationRelTimeCam", "Time", drawoption);
310	DrawTab(plist, "MHCalibrationChargeCam", "Charge", drawoption);
311
312	//
313	// Update display
314	//
315	TString title = fDisplay->GetTitle();
316	title += "-- Calibration ";
317	title += Form("calib%08d", fSequence.GetSequence());
318	title += " --";
319	fDisplay->SetTitle(title);
320
321	//
322	// Get container from list
323	//
324	MGeomCam &geomcam = (MGeomCam)plist.FindObject("MGeomCam");
325
326	// Create histograms to display
327	MHCamera disp1 (geomcam, "Charge", "Fitted Mean Signal (Charges)");
328	MHCamera disp2 (geomcam, "SigmaCharge", "Sigma of Fitted Signal");
329	MHCamera disp3 (geomcam, "RSigma", "Reduced Sigmas");
330	MHCamera disp4 (geomcam, "RSigmaPerCharge", "Reduced Sigma per Charge");
331	MHCamera disp5 (geomcam, "NumPhes", "Number Photo-electrons");
332	MHCamera disp6 (geomcam, "ConvFADC2Phes", "Phes per Charge (Before Flat-Field)");
333	MHCamera disp7 (geomcam, "TotalFFactor", "Total F-Factor(F-Factor Method)");
334	MHCamera disp8 (geomcam, "CascadesQEFFactor", "Cascades QE (F-Factor Method)");
335	MHCamera disp9 (geomcam, "CascadesQEBlindPix","Cascades QE (Blind Pixel Method)");
336	MHCamera disp10(geomcam, "CascadesQEPINDiode","Cascades QE (PIN Diode Method)");
337	MHCamera disp11(geomcam, "CascadesQECombined","Cascades QE (Combined Method)");
338	MHCamera disp12(geomcam, "FFactorValid", "Pixels with Valid F-Factor Calibration");
339	MHCamera disp13(geomcam, "BlindPixelValid", "Pixels with valid BlindPixel Calibration");
340	MHCamera disp14(geomcam, "PINdiodeValid", "Pixels with Valid PINDiode Calibration");
341	MHCamera disp15(geomcam, "CombinedValid", "Pixels with Valid Combined Calibration");
342	MHCamera disp16(geomcam, "Saturation", "Pixels with Saturated Hi Gain");
343	MHCamera disp17(geomcam, "ConversionMeans", "Conversion HiGain.vs.LoGain Means");
344	MHCamera disp18(geomcam, "ConversionSigmas", "Conversion HiGain.vs.LoGain Sigmas");
345	MHCamera disp19(geomcam, "HiGainPickup", "Number Pickup Events Hi Gain");
346	MHCamera disp20(geomcam, "LoGainPickup", "Number Pickup Events Lo Gain");
347	MHCamera disp21(geomcam, "HiGainBlackout", "Number Blackout Events Hi Gain");
348	MHCamera disp22(geomcam, "LoGainBlackout", "Number Blackout Events Lo Gain");
349	MHCamera disp23(geomcam, "Excluded", "Pixels Previously Excluded");
350	MHCamera disp24(geomcam, "UnSuitable", "Pixels NOT Suited for Further Analysis");
351	MHCamera disp25(geomcam, "UnReliable", "Pixels Suitable, but NOT Reliable for Further Analysis");
352	MHCamera disp26(geomcam, "HiGainOscillating", "Oscillating Pixels High Gain");
353	MHCamera disp27(geomcam, "LoGainOscillating", "Oscillating Pixels Low Gain");
354	MHCamera disp28(geomcam, "AbsTimeMean", "Abs. Arrival Times");
355	MHCamera disp29(geomcam, "AbsTimeRms", "RMS of Arrival Times");
356	MHCamera disp30(geomcam, "MeanTime", "Mean Rel. Arrival Times");
357	MHCamera disp31(geomcam, "SigmaTime", "Sigma Rel. Arrival Times");
358	MHCamera disp32(geomcam, "TimeProb", "Probability of Time Fit");
359	MHCamera disp33(geomcam, "TimeNotFitValid", "Pixels with not valid Fit Results");
360	MHCamera disp34(geomcam, "TimeOscillating", "Oscillating Pixels");
361	MHCamera disp35(geomcam, "TotalConv", "Conversion Factor to Photons");
362	MHCamera disp36(geomcam, "RMSperMean", "Charge histogram RMS per Mean");
363	MHCamera disp37(geomcam, "TotalConvPhe", "Conversion Factor to equiv. Phe's");
364
365	MCalibrationChargeCam *cam = NULL;
366	MCalibrationQECam *qecam = NULL;
367	MCalibrationRelTimeCam *relcam = NULL;
368	MBadPixelsCam *badcam = NULL;
369
370	if (IsIntensity())
371	{
372	cam = (MCalibrationChargeCam*) fIntensCalibCam.GetCam();
373	qecam = (MCalibrationQECam*) fIntensQECam.GetCam();
374	relcam = (MCalibrationRelTimeCam*)fIntensRelTimeCam.GetCam();
375	badcam = (MBadPixelsCam*) fIntensBadCam.GetCam();
376	}
377	else
378	{
379	cam = &fCalibrationCam;
380	qecam = &fQECam;
381	relcam = &fRelTimeCam;
382	badcam = &fBadPixels;
383	}
384
385	// Fitted charge means and sigmas
386	disp1.SetCamContent(*cam, 0);
387	disp1.SetCamError( *cam, 1);
388	disp2.SetCamContent(*cam, 2);
389	disp2.SetCamError( *cam, 3);
390
391	// Reduced Sigmas and reduced sigmas per charge
392	disp3.SetCamContent(*cam, 5);
393	disp3.SetCamError( *cam, 6);
394	disp4.SetCamContent(*cam, 7);
395	disp4.SetCamError( *cam, 8);
396
397	// F-Factor Method
398	disp5.SetCamContent(*cam, 9);
399	disp5.SetCamError( *cam, 10);
400	disp6.SetCamContent(*cam, 11);
401	disp6.SetCamError( *cam, 12);
402	disp7.SetCamContent(*cam, 13);
403	disp7.SetCamError( *cam, 14);
404
405	// Quantum Efficiencies
406	disp8.SetCamContent (*qecam, 0 );
407	disp8.SetCamError (*qecam, 1 );
408	disp9.SetCamContent (*qecam, 2 );
409	disp9.SetCamError (*qecam, 3 );
410	disp10.SetCamContent(*qecam, 4 );
411	disp10.SetCamError (*qecam, 5 );
412	disp11.SetCamContent(*qecam, 6 );
413	disp11.SetCamError (*qecam, 7 );
414
415	// Valid flags
416	disp12.SetCamContent(*qecam, 8 );
417	disp13.SetCamContent(*qecam, 9 );
418	disp14.SetCamContent(*qecam, 10);
419	disp15.SetCamContent(*qecam, 11);
420
421	// Conversion Hi-Lo
422	disp16.SetCamContent(*cam, 25);
423	disp17.SetCamContent(*cam, 16);
424	disp17.SetCamError (*cam, 17);
425	disp18.SetCamContent(*cam, 18);
426	disp18.SetCamError (*cam, 19);
427
428	// Pickup and Blackout
429	disp19.SetCamContent(*cam, 21);
430	disp20.SetCamContent(*cam, 22);
431	disp21.SetCamContent(*cam, 23);
432	disp22.SetCamContent(*cam, 24);
433
434	// Pixels with defects
435	disp23.SetCamContent(*cam, 20);
436	disp24.SetCamContent(*badcam, 6);
437	disp25.SetCamContent(*badcam, 7);
438
439	// Oscillations
440	disp26.SetCamContent(*badcam, 10);
441	disp27.SetCamContent(*badcam, 11);
442
443	// Arrival Times
444	disp28.SetCamContent(*cam, 26);
445	disp28.SetCamError( *cam, 27);
446	disp29.SetCamContent(*cam, 27);
447
448	// RMS and Mean
449	disp36.SetCamContent(*cam,32);
450	disp36.SetCamError(*cam,33);
451
452	disp1.SetYTitle("Q [FADC cnts]");
453	disp2.SetYTitle("\\sigma_{Q} [FADC cnts]");
454
455	disp3.SetYTitle("\\sqrt{\\sigma^{2}_{Q} - RMS^{2}_{Ped}} [FADC cnts]");
456	disp4.SetYTitle("Red.Sigma/<Q> [1]");
457
458	disp5.SetYTitle("Photo-electons [1]");
459	disp6.SetYTitle("Phes/<Q> [FADC cnts^{-1}]");
460	disp7.SetYTitle("Total F-Factor [1]");
461
462	disp8.SetYTitle("QE [1]");
463	disp9.SetYTitle("QE [1]");
464	disp10.SetYTitle("QE [1]");
465	disp11.SetYTitle("QE [1]");
466
467	disp12.SetYTitle("[1]");
468	disp13.SetYTitle("[1]");
469	disp14.SetYTitle("[1]");
470	disp15.SetYTitle("[1]");
471	disp16.SetYTitle("[1]");
472
473	disp17.SetYTitle("<Q>(High)/<Q>(Low) [1]");
474	disp18.SetYTitle("\\sigma_{Q}(High)/\\sigma_{Q}(Low) [1]");
475
476	disp19.SetYTitle("[1]");
477	disp20.SetYTitle("[1]");
478	disp21.SetYTitle("[1]");
479	disp22.SetYTitle("[1]");
480	// disp23.SetYTitle("[1]");
481	// disp24.SetYTitle("[1]");
482	// disp25.SetYTitle("[1]");
483	disp26.SetYTitle("[1]");
484	disp27.SetYTitle("[1]");
485
486	disp28.SetYTitle("Mean Abs. Time [FADC sl.]");
487	disp29.SetYTitle("RMS Abs. Time [FADC sl.]");
488	disp35.SetYTitle("Conv.Factor [Ph/FADC cnts]");
489	disp36.SetYTitle("Charge RMS/<Q> [1]");
490	disp37.SetYTitle("Conv.Factor [Phe/FADC cnts]");
491
492	for (UInt_t i=0;i<geomcam.GetNumPixels();i++)
493	{
494
495	MCalibrationChargePix &pix = (MCalibrationChargePix&)(*cam) [i];
496	MCalibrationQEPix &qe = (MCalibrationQEPix&) (*qecam)[i];
497
498	if (!pix.IsFFactorMethodValid())
499	continue;
500
501	const Float_t convphe = pix.GetMeanConvFADC2Phe();
502	const Float_t quaeff = qe.GetQECascadesFFactor(0.);
503
504	disp35.Fill(i,convphe/quaeff);
505	disp35.SetUsed(i);
506
507	disp37.Fill(i,convphe/quaeff*MCalibrationQEPix::gkDefaultAverageQE);
508	disp37.SetUsed(i);
509	}
510
511
512	if (IsRelTimes())
513	{
514	disp30.SetCamContent(*relcam,0);
515	disp30.SetCamError( *relcam,1);
516	disp31.SetCamContent(*relcam,2);
517	disp31.SetCamError( *relcam,3);
518	disp32.SetCamContent(*relcam,4);
519	disp33.SetCamContent(fBadPixels,20);
520	disp34.SetCamContent(fBadPixels,21);
521
522	disp30.SetYTitle("Time Offset [FADC units]");
523	disp31.SetYTitle("Timing resolution [FADC units]");
524	disp32.SetYTitle("P_{Time} [1]");
525	disp33.SetYTitle("[1]");
526	disp34.SetYTitle("[1]");
527	}
528
529	if (fDisplayType == kDataCheckDisplay)
530	{
531
532	TCanvas &c1 = fDisplay->AddTab("FitCharge");
533	c1.Divide(3, 3);
534
535	//
536	// MEAN CHARGES
537	//
538
539	c1.cd(1);
540	gPad->SetBorderMode(0);
541	gPad->SetTicks();
542	MHCamera obj1=(MHCamera)disp1.DrawCopy("hist");
543	//
544	// for the datacheck, fix the ranges!!
545	//
546	// obj1->SetMinimum(fChargeMin);
547	// obj1->SetMaximum(fChargeMax);
548	//
549	// Set the datacheck sizes:
550	//
551	FixDataCheckHist((TH1D*)obj1);
552	obj1->SetStats(kFALSE);
553	//
554	// set reference lines
555	//
556	// DisplayReferenceLines(obj1,0);
557
558	c1.cd(4);
559	gPad->SetBorderMode(0);
560	obj1->SetPrettyPalette();
561	obj1->Draw();
562
563	c1.cd(7);
564	gPad->SetBorderMode(0);
565	gPad->SetTicks();
566	TH1D obj2 = (TH1D)obj1->Projection(obj1->GetName());
567	obj2->Draw();
568	obj2->SetBit(kCanDelete);
569	obj2->Fit("gaus","Q");
570	TF1 *fun2 = obj2->GetFunction("gaus");
571	fun2->SetLineColor(kYellow);
572	gPad->Modified();
573	gPad->Update();
574	TPaveStats st = (TPaveStats)obj2->GetListOfFunctions()->FindObject("stats");
575	st->SetY1NDC(0.55);
576	st->SetY2NDC(0.89);
577	st->SetX1NDC(0.65);
578	st->SetX2NDC(0.99);
579	gPad->Modified();
580	gPad->Update();
581	//
582	// Set the datacheck sizes:
583	//
584	FixDataCheckHist(obj2);
585	obj2->SetStats(1);
586
587	//
588	// Display the outliers as dead and noisy pixels
589	//
590	DisplayOutliers(obj2,"low-ampl.","high-ampl.");
591	TLatex flattex;
592	flattex.SetTextSize(0.07);
593	const Double_t minl = obj2->GetBinCenter(obj2->GetXaxis()->GetFirst());
594	const Double_t maxl = obj2->GetBinCenter(obj2->GetXaxis()->GetLast());
595	flattex.DrawLatex(minl+0.015*(maxl-minl),obj2->GetBinContent(obj2->GetMaximumBin())/1.35,
596	Form("Flatfield precision: %4.2f%%",
597	fun2->GetParameter(2)/fun2->GetParameter(1)*100.));
598
599	//
600	// RMS per Charge
601	//
602
603	c1.cd(2);
604	gPad->SetBorderMode(0);
605	gPad->SetTicks();
606	MHCamera obj3=(MHCamera)disp36.DrawCopy("hist");
607	//
608	// for the datacheck, fix the ranges!!
609	//
610	// obj3->SetMinimum(0.);
611	// obj3->SetMaximum(fChargeMax);
612	//
613	// Set the datacheck sizes:
614	//
615	FixDataCheckHist((TH1D*)obj3);
616	obj3->SetStats(kFALSE);
617	//
618	// set reference lines
619	//
620	// DisplayReferenceLines(obj3,0);
621
622	c1.cd(5);
623	gPad->SetBorderMode(0);
624	obj3->SetPrettyPalette();
625	obj3->Draw();
626
627	c1.cd(8);
628	gPad->SetBorderMode(0);
629	if (geomcam.InheritsFrom("MGeomCamMagic"))
630	DisplayDoubleProject(&disp36, "dead", "noisy");
631
632	//
633	// PHOTO ELECTRONS
634	//
635
636	c1.cd(3);
637	gPad->SetBorderMode(0);
638	gPad->SetTicks();
639	MHCamera obj4=(MHCamera)disp5.DrawCopy("hist");
640	//
641	// for the datacheck, fix the ranges!!
642	//
643	// obj3->SetMinimum(fChargeMin);
644	// obj3->SetMaximum(fChargeMax);
645	//
646	// Set the datacheck sizes:
647	//
648	FixDataCheckHist((TH1D*)obj4);
649	obj4->SetStats(kFALSE);
650	//
651	// set reference lines
652	//
653	// DisplayReferenceLines(obj3,0);
654
655	c1.cd(6);
656	gPad->SetBorderMode(0);
657	obj4->SetPrettyPalette();
658	obj4->Draw();
659
660	c1.cd(9);
661	gPad->SetBorderMode(0);
662	if (geomcam.InheritsFrom("MGeomCamMagic"))
663	DisplayDoubleProject(&disp5, "dead", "noisy");
664
665	//
666	// CONVERSION FACTORS
667	//
668	TCanvas &c2 = fDisplay->AddTab("Conversion");
669	c2.Divide(3,3);
670
671	c2.cd(1);
672	gPad->SetBorderMode(0);
673	gPad->SetTicks();
674	MHCamera obj5=(MHCamera)disp6.DrawCopy("hist");
675	//
676	// for the datacheck, fix the ranges!!
677	//
678	obj5->SetMinimum(fConvFADC2PheMin);
679	obj5->SetMaximum(fConvFADC2PheMax);
680	//
681	// Set the datacheck sizes:
682	//
683	FixDataCheckHist((TH1D*)obj5);
684	obj5->SetStats(kFALSE);
685	//
686	// set reference lines
687	//
688	DisplayReferenceLines(obj5,2);
689
690	c2.cd(4);
691	gPad->SetBorderMode(0);
692	obj5->SetPrettyPalette();
693	obj5->Draw();
694
695	c2.cd(7);
696	gPad->SetBorderMode(0);
697	if (geomcam.InheritsFrom("MGeomCamMagic"))
698	DisplayDoubleProject(&disp6, "noisy", "dead");
699
700	//
701	// QUANTUM EFFICIENCY
702	//
703	c2.cd(2);
704	gPad->SetBorderMode(0);
705	gPad->SetTicks();
706	MHCamera obj6=(MHCamera)disp8.DrawCopy("hist");
707	//
708	// for the datacheck, fix the ranges!!
709	//
710	obj6->SetMinimum(fQEMin);
711	obj6->SetMaximum(fQEMax);
712	//
713	// Set the datacheck sizes:
714	//
715	FixDataCheckHist((TH1D*)obj6);
716	obj6->SetStats(kFALSE);
717	//
718	// set reference lines
719	//
720	DisplayReferenceLines(obj6,0);
721
722	c2.cd(5);
723	gPad->SetBorderMode(0);
724	obj6->SetPrettyPalette();
725	obj6->Draw();
726
727	c2.cd(8);
728	gPad->SetBorderMode(0);
729	if (geomcam.InheritsFrom("MGeomCamMagic"))
730	DisplayDoubleProject(&disp8, "noisy", "dead");
731
732	//
733	// CONVERSION FADC TO PHOTONS
734	//
735
736	c2.cd(3);
737	gPad->SetBorderMode(0);
738	gPad->SetTicks();
739	MHCamera obj7=(MHCamera)disp37.DrawCopy("hist");
740	//
741	// for the datacheck, fix the ranges!!
742	//
743	obj7->SetMinimum(fConvFADC2PheMin);
744	obj7->SetMaximum(fConvFADC2PheMax);
745	//
746	// Set the datacheck sizes:
747	//
748	FixDataCheckHist((TH1D*)obj7);
749	obj7->SetStats(kFALSE);
750	//
751	// set reference lines
752	//
753	DisplayReferenceLines(obj7,1);
754
755	c2.cd(6);
756	gPad->SetBorderMode(0);
757	obj7->SetPrettyPalette();
758	obj7->Draw();
759	c2.cd(9);
760	gPad->SetBorderMode(0);
761	if (geomcam.InheritsFrom("MGeomCamMagic"))
762	DisplayDoubleProject(&disp37, "noisy", "dead");
763
764	//
765	// ARRIVAL TIMES
766	//
767	TCanvas &c3 = fDisplay->AddTab("AbsTimes");
768	c3.Divide(2,3);
769
770	c3.cd(1);
771	gPad->SetBorderMode(0);
772	gPad->SetTicks();
773	MHCamera obj10=(MHCamera)disp28.DrawCopy("hist");
774	//
775	// for the datacheck, fix the ranges!!
776	//
777	obj10->SetMinimum(fArrivalTimeMin);
778	obj10->SetMaximum(fArrivalTimeMax);
779	//
780	// Set the datacheck sizes:
781	//
782	FixDataCheckHist((TH1D*)obj10);
783	obj10->SetStats(kFALSE);
784	//
785	// set reference lines
786	//
787	DisplayReferenceLines(obj10,3);
788
789	c3.cd(3);
790	gPad->SetBorderMode(0);
791	obj10->SetPrettyPalette();
792	obj10->Draw();
793
794	c3.cd(5);
795	gPad->SetBorderMode(0);
796	if (geomcam.InheritsFrom("MGeomCamMagic"))
797	DisplayDoubleProject(&disp28, "early", "late");
798
799	//
800	// ARRIVAL TIMES JITTER
801	//
802	c3.cd(2);
803	gPad->SetBorderMode(0);
804	gPad->SetTicks();
805	MHCamera obj11=(MHCamera)disp29.DrawCopy("hist");
806	//
807	// for the datacheck, fix the ranges!!
808	//
809	// obj11->SetMinimum(fArrivalTimeMin);
810	// obj11->SetMaximum(fArrivalTimeMax);
811	//
812	// Set the datacheck sizes:
813	//
814	FixDataCheckHist((TH1D*)obj11);
815	obj11->SetStats(kFALSE);
816	//
817	// set reference lines
818	//
819	DisplayReferenceLines(obj11,4);
820
821	c3.cd(4);
822	gPad->SetBorderMode(0);
823	obj11->SetPrettyPalette();
824	obj11->Draw();
825
826	c3.cd(6);
827	gPad->SetBorderMode(0);
828	if (geomcam.InheritsFrom("MGeomCamMagic"))
829	DisplayDoubleProject(&disp29, "", "jittering");
830
831	//
832	// UNSUITABLE PIXELS
833	//
834	TCanvas &c4 = fDisplay->AddTab("Defect");
835	c4.Divide(2,2);
836
837	c4.cd(1);
838	gPad->SetBorderMode(0);
839	gPad->SetTicks();
840	MHCamera obj8=(MHCamera)disp24.DrawCopy("hist");
841	//
842	// for the datacheck, fix the ranges!!
843	//
844	const Double_t max = 10.;
845	obj8->SetMinimum(0.);
846	obj8->SetMaximum(max);
847	//
848	// Set the datacheck sizes:
849	//
850	FixDataCheckHist((TH1D*)obj8);
851	obj8->SetStats(kFALSE);
852
853	gStyle->SetPalette(1);
854	const Int_t numcol = gStyle->GetNumberOfColors()-3;
855
856	TPaveText *pave = new TPaveText(0.0,0.0,0.99,0.99);
857	pave->SetBit(kCanDelete);
858	pave->ConvertNDCtoPad();
859	pave->SetTextSize(0.045);
860	pave->AddText(" ");
861	TText *t1 = pave->AddText(Form("Signal smaller 4.5 Pedestal RMS: %3i pixels",
862	CountBadPixels(&disp24,1)));
863	t1->SetTextColor(gStyle->GetColorPalette(Int_t(1./max*numcol)));
864	t1->SetTextAlign(12);
865	TText *t4 = pave->AddText(Form("Low Gain Saturation: %3i pixels",
866	CountBadPixels(&disp24,2)));
867	t4->SetTextColor(gStyle->GetColorPalette(Int_t(2./max*numcol)));
868	t4->SetTextAlign(12);
869	TText *t5 = pave->AddText(Form("Mean Arr. Time In First Extraction Bin: %3i pixels",
870	CountBadPixels(&disp24,3)));
871	t5->SetTextColor(gStyle->GetColorPalette(Int_t(3./max*numcol)));
872	t5->SetTextAlign(12);
873	TText *t6 = pave->AddText(Form("Mean Arr. Time In Last 2 Extraction Bins: %3i pixels",
874	CountBadPixels(&disp24,4)));
875	t6->SetTextColor(gStyle->GetColorPalette(Int_t(4./max*numcol)));
876	t6->SetTextAlign(12);
877	TText *t10= pave->AddText(Form("High-Gain Histogram Overflow: %3i pixels",
878	CountBadPixels(&disp24,5 )));
879	t10->SetTextColor(gStyle->GetColorPalette(Int_t(5./max*numcol)));
880	t10->SetTextAlign(12);
881	TText *t11= pave->AddText(Form("Low-Gain Histogram Overflow: %3i pixels",
882	CountBadPixels(&disp24,6 )));
883	t11->SetTextColor(gStyle->GetColorPalette(Int_t(6./max*numcol)));
884	t11->SetTextAlign(12);
885	TText *t12= pave->AddText(Form("Presumably dead from Ped. Rms: %3i pixels",
886	CountBadPixels(&disp24,7 )));
887	t12->SetTextColor(gStyle->GetColorPalette(Int_t(7./max*numcol)));
888	t12->SetTextAlign(12);
889	TText *t13= pave->AddText(Form("Fluctuating Pulse Arrival Times: %3i pixels",
890	CountBadPixels(&disp24,8 )));
891	t13->SetTextColor(gStyle->GetColorPalette(Int_t(8./max*numcol)));
892	t13->SetTextAlign(12);
893	TText *t17 = pave->AddText(Form("Deviating Number of Photo-electrons: %3i pixels",
894	CountBadPixels(&disp24,9 )));
895	t17->SetTextColor(gStyle->GetColorPalette(Int_t(9./max*numcol)));
896	t17->SetTextAlign(12);
897	TText *t15= pave->AddText(Form("Too many Low-Gain Blackout Events: %3i pixels",
898	CountBadPixels(&disp24,10 )));
899	t15->SetTextColor(gStyle->GetColorPalette(Int_t(10./max*numcol)));
900	t15->SetTextAlign(12);
901	TText *t14= pave->AddText(Form("Previously Excluded: %3i pixels",
902	CountBadPixels(&disp24,11)));
903	t14->SetTextColor(gStyle->GetColorPalette(Int_t(11./max*numcol)));
904	t14->SetTextAlign(12);
905	pave->Draw();
906
907	c4.cd(3);
908	gPad->SetBorderMode(0);
909	obj8->Draw();
910	obj8->SetPrettyPalette();
911
912	//
913	// UNRELIABLE PIXELS
914	//
915
916	c4.cd(2);
917	gPad->SetBorderMode(0);
918	gPad->SetTicks();
919	MHCamera obj9=(MHCamera)disp25.DrawCopy("hist");
920	//
921	// for the datacheck, fix the ranges!!
922	//
923	const Double_t max2 = 9.;
924	obj9->SetMinimum(0.);
925	obj9->SetMaximum(max2);
926	//
927	// Set the datacheck sizes:
928	//
929	FixDataCheckHist((TH1D*)obj9);
930	obj9->SetStats(kFALSE);
931
932	gStyle->SetPalette(1);
933
934	TPaveText *pave2 = new TPaveText(0.0,0.0,0.99,0.99);
935	pave2->SetBit(kCanDelete);
936	pave2->ConvertNDCtoPad();
937	pave2->SetTextSize(0.05);
938	pave2->AddText(" ");
939	TText *t3 = pave2->AddText(Form("Signal Sigma smaller Pedestal RMS: %3i pixels",
940	CountBadPixels(&disp25,1)));
941	t3->SetTextColor(gStyle->GetColorPalette(Int_t(1./max2*numcol)));
942	t3->SetTextAlign(12);
943	TText *tt1 = pave2->AddText(Form("High Gain Signals could not be fitted: %3i pixels",
944	CountBadPixels(&disp25,3)));
945	tt1->SetTextColor(gStyle->GetColorPalette(Int_t(3./max2*numcol)));
946	tt1->SetTextAlign(12);
947	TText *tt2 = pave2->AddText(Form("Low Gain Signals could not be fitted: %3i pixels",
948	CountBadPixels(&disp25,4)));
949	tt2->SetTextColor(gStyle->GetColorPalette(Int_t(4./max2*numcol)));
950	tt2->SetTextAlign(12);
951	TText *tt3 = pave2->AddText(Form("Relative Arr. Times could not be fitted: %3i pixels",
952	CountBadPixels(&disp25,5)));
953	tt3->SetTextColor(gStyle->GetColorPalette(Int_t(5./max2*numcol)));
954	tt3->SetTextAlign(12);
955	TText *tt4 = pave2->AddText(Form("High Gain Signals Oscillation: %3i pixels",
956	CountBadPixels(&disp25,6)));
957	tt4->SetTextColor(gStyle->GetColorPalette(Int_t(6./max2*numcol)));
958	tt4->SetTextAlign(12);
959	TText *tt5 = pave2->AddText(Form("Low Gain Signals Oscillation: %3i pixels",
960	CountBadPixels(&disp25,7)));
961	tt5->SetTextColor(gStyle->GetColorPalette(Int_t(7./max2*numcol)));
962	tt5->SetTextAlign(12);
963	TText *tt6 = pave2->AddText(Form("Relative Arr. Times Oscillation: %3i pixels",
964	CountBadPixels(&disp25,8)));
965	tt6->SetTextColor(gStyle->GetColorPalette(Int_t(8./max2*numcol)));
966	tt6->SetTextAlign(12);
967	TText *tt8 = pave2->AddText(Form("Deviating global F-Factor: %3i pixels",
968	CountBadPixels(&disp25,9)));
969	tt8->SetTextColor(gStyle->GetColorPalette(Int_t(9./max2*numcol)));
970	tt8->SetTextAlign(12);
971	pave2->Draw();
972
973	c4.cd(4);
974	gPad->SetBorderMode(0);
975	obj9->SetPrettyPalette();
976	obj9->Draw();
977
978	if (IsRelTimes())
979	{
980	TCanvas &c5 = fDisplay->AddTab("RelTimes");
981	c5.Divide(2,3);
982
983	//
984	// MEAN REL. ARR. TIMES
985	//
986	c5.cd(1);
987	gPad->SetBorderMode(0);
988	gPad->SetTicks();
989	MHCamera obj10=(MHCamera)disp30.DrawCopy("hist");
990	//
991	// for the datacheck, fix the ranges!!
992	//
993	obj10->SetMinimum(fTimeOffsetMin);
994	obj10->SetMaximum(fTimeOffsetMax);
995	//
996	// Set the datacheck sizes:
997	//
998	FixDataCheckHist((TH1D*)obj10);
999	obj10->SetStats(kFALSE);
1000	//
1001	// set reference lines
1002	//
1003	DisplayReferenceLines(obj10,5);
1004
1005	c5.cd(3);
1006	gPad->SetBorderMode(0);
1007	obj10->SetPrettyPalette();
1008	obj10->Draw();
1009
1010	c5.cd(5);
1011	gPad->SetBorderMode(0);
1012	if (geomcam.InheritsFrom("MGeomCamMagic"))
1013	DisplayDoubleProject(&disp30, "early", "late");
1014
1015	//
1016	// JITTER Rel. Arr. Times
1017	//
1018	c5.cd(2);
1019	gPad->SetBorderMode(0);
1020	gPad->SetTicks();
1021	MHCamera obj11=(MHCamera)disp31.DrawCopy("hist");
1022	//
1023	// for the datacheck, fix the ranges!!
1024	//
1025	obj11->SetMinimum(fTimeResolutionMin);
1026	obj11->SetMaximum(fTimeResolutionMax);
1027	//
1028	// Set the datacheck sizes:
1029	//
1030	FixDataCheckHist((TH1D*)obj11);
1031	obj11->SetStats(kFALSE);
1032	//
1033	// set reference lines
1034	//
1035	DisplayReferenceLines(obj11,6);
1036
1037	c5.cd(4);
1038	gPad->SetBorderMode(0);
1039	obj11->SetPrettyPalette();
1040	obj11->Draw();
1041
1042	c5.cd(6);
1043	gPad->SetBorderMode(0);
1044	if (geomcam.InheritsFrom("MGeomCamMagic"))
1045	DisplayDoubleProject(&disp31, "too stable", "jittering");
1046
1047	}
1048	return;
1049	}
1050
1051	if (fDisplayType == kNormalDisplay)
1052	{
1053
1054	// Charges
1055	TCanvas &c11 = fDisplay->AddTab("FitCharge");
1056	c11.Divide(2, 4);
1057
1058	disp1.CamDraw(c11, 1, 2, 5, 1);
1059	disp2.CamDraw(c11, 2, 2, 5, 1);
1060
1061	// Reduced Sigmas
1062	TCanvas &c12 = fDisplay->AddTab("RedSigma");
1063	c12.Divide(2,4);
1064
1065	disp3.CamDraw(c12, 1, 2, 5, 1);
1066	disp4.CamDraw(c12, 2, 2, 5, 1);
1067
1068	// F-Factor
1069	TCanvas &c13 = fDisplay->AddTab("Phe's");
1070	c13.Divide(3,4);
1071
1072	disp5.CamDraw(c13, 1, 3, 5, 1);
1073	disp6.CamDraw(c13, 2, 3, 5, 1);
1074	disp7.CamDraw(c13, 3, 3, 5, 1);
1075
1076	// QE's
1077	TCanvas &c14 = fDisplay->AddTab("QE's");
1078	c14.Divide(4,4);
1079
1080	disp8.CamDraw(c14, 1, 4, 5, 1);
1081	disp9.CamDraw(c14, 2, 4, 5, 1);
1082	disp10.CamDraw(c14, 3, 4, 5, 1);
1083	disp11.CamDraw(c14, 4, 4, 5, 1);
1084
1085	// Defects
1086	TCanvas &c15 = fDisplay->AddTab("Defect");
1087	// c15.Divide(5,2);
1088	c15.Divide(4,2);
1089
1090	/*
1091	disp23.CamDraw(c15, 1, 5, 0);
1092	disp24.CamDraw(c15, 2, 5, 0);
1093	disp25.CamDraw(c15, 3, 5, 0);
1094	disp26.CamDraw(c15, 4, 5, 0);
1095	disp27.CamDraw(c15, 5, 5, 0);
1096	*/
1097	disp24.CamDraw(c15, 1, 4, 0);
1098	disp25.CamDraw(c15, 2, 4, 0);
1099	disp26.CamDraw(c15, 3, 4, 0);
1100	disp27.CamDraw(c15, 4, 4, 0);
1101
1102	// Abs. Times
1103	TCanvas &c16 = fDisplay->AddTab("AbsTimes");
1104	c16.Divide(2,3);
1105
1106	disp28.CamDraw(c16, 1, 2, 5);
1107	disp29.CamDraw(c16, 2, 2, 5);
1108
1109	if (IsRelTimes())
1110	{
1111	// Rel. Times
1112	TCanvas &c17 = fDisplay->AddTab("RelTimes");
1113	c17.Divide(2,4);
1114
1115	disp30.CamDraw(c17, 1, 2, 5, 1);
1116	disp31.CamDraw(c17, 2, 2, 5, 1);
1117	}
1118
1119	return;
1120	}
1121
1122	if (fDisplayType == kFullDisplay)
1123	{
1124	MHCalibrationCam cam = (MHCalibrationCam)plist.FindObject("MHCalibrationChargeCam");
1125
1126	for (Int_t sector=1;sector<cam->GetAverageSectors();sector++)
1127	{
1128	cam->GetAverageHiGainSector(sector).DrawClone("all");
1129	cam->GetAverageLoGainSector(sector).DrawClone("all");
1130	}
1131
1132	// Charges
1133	TCanvas &c21 = fDisplay->AddTab("FitCharge");
1134	c21.Divide(2, 4);
1135
1136	disp1.CamDraw(c21, 1, 2, 2, 1);
1137	disp2.CamDraw(c21, 2, 2, 2, 1);
1138
1139	// Reduced Sigmas
1140	TCanvas &c23 = fDisplay->AddTab("RedSigma");
1141	c23.Divide(2,4);
1142
1143	disp3.CamDraw(c23, 1, 2, 2, 1);
1144	disp4.CamDraw(c23, 2, 2, 2, 1);
1145
1146	// F-Factor
1147	TCanvas &c24 = fDisplay->AddTab("Phe's");
1148	c24.Divide(3,5);
1149
1150	disp5.CamDraw(c24, 1, 3, 2, 1, 1);
1151	disp6.CamDraw(c24, 2, 3, 2, 1, 1);
1152	disp7.CamDraw(c24, 3, 3, 2, 1, 1);
1153
1154	// QE's
1155	TCanvas &c25 = fDisplay->AddTab("QE's");
1156	c25.Divide(4,5);
1157
1158	disp8.CamDraw(c25, 1, 4, 2, 1, 1);
1159	disp9.CamDraw(c25, 2, 4, 2, 1, 1);
1160	disp10.CamDraw(c25, 3, 4, 2, 1, 1);
1161	disp11.CamDraw(c25, 4, 4, 2, 1, 1);
1162
1163	// Validity
1164	TCanvas &c26 = fDisplay->AddTab("Valid");
1165	c26.Divide(4,2);
1166
1167	disp12.CamDraw(c26, 1, 4, 0);
1168	disp13.CamDraw(c26, 2, 4, 0);
1169	disp14.CamDraw(c26, 3, 4, 0);
1170	disp15.CamDraw(c26, 4, 4, 0);
1171
1172	// Other info
1173	TCanvas &c27 = fDisplay->AddTab("HiLoGain");
1174	c27.Divide(3,3);
1175
1176	disp16.CamDraw(c27, 1, 3, 0);
1177	disp17.CamDraw(c27, 2, 3, 1);
1178	disp18.CamDraw(c27, 3, 3, 1);
1179
1180	// Pickup
1181	TCanvas &c28 = fDisplay->AddTab("Pickup");
1182	c28.Divide(4,2);
1183
1184	disp19.CamDraw(c28, 1, 4, 0);
1185	disp20.CamDraw(c28, 2, 4, 0);
1186	disp21.CamDraw(c28, 3, 4, 0);
1187	disp22.CamDraw(c28, 4, 4, 0);
1188
1189	// Defects
1190	TCanvas &c29 = fDisplay->AddTab("Defect");
1191	// c29.Divide(5,2);
1192	c29.Divide(4,2);
1193
1194	disp24.CamDraw(c29, 1, 4, 0);
1195	disp25.CamDraw(c29, 2, 4, 0);
1196	disp26.CamDraw(c29, 3, 4, 0);
1197	disp27.CamDraw(c29, 4, 4, 0);
1198
1199	// Abs. Times
1200	TCanvas &c30 = fDisplay->AddTab("AbsTimes");
1201	c30.Divide(2,3);
1202
1203	disp28.CamDraw(c30, 1, 2, 2);
1204	disp29.CamDraw(c30, 2, 2, 1);
1205
1206	if (IsRelTimes())
1207	{
1208	// Rel. Times
1209	TCanvas &c31 = fDisplay->AddTab("RelTimes");
1210	c31.Divide(3,5);
1211
1212	disp30.CamDraw(c31, 1, 3, 2, 1, 1);
1213	disp31.CamDraw(c31, 2, 3, 2, 1, 1);
1214	disp32.CamDraw(c31, 3, 3, 4, 1, 1);
1215
1216	// Time Defects
1217	TCanvas &c32 = fDisplay->AddTab("DefTime");
1218	c32.Divide(2,2);
1219
1220	disp33.CamDraw(c32, 1, 2, 0);
1221	disp34.CamDraw(c32, 2, 2, 0);
1222
1223	MHCalibrationCam cam = (MHCalibrationCam)plist.FindObject("MHCalibrationRelTimeCam");
1224
1225	for (Int_t sector=1;sector<cam->GetAverageSectors();sector++)
1226	{
1227	cam->GetAverageHiGainSector(sector).DrawClone("fourierevents");
1228	cam->GetAverageLoGainSector(sector).DrawClone("fourierevents");
1229	}
1230
1231	}
1232
1233	return;
1234	}
1235	}
1236
1237
1238	void MJCalibration::DisplayReferenceLines(MHCamera *cam, const Int_t what) const
1239	{
1240
1241	const MGeomCam *geom = cam->GetGeometry();
1242
1243	Double_t x = geom->InheritsFrom("MGeomCamMagic") ? 397 : cam->GetNbinsX() ;
1244
1245	TLine line;
1246	line.SetLineStyle(kDashed);
1247	line.SetLineWidth(3);
1248	line.SetLineColor(kBlue);
1249
1250	TLine *l1 = NULL;
1251
1252	switch (what)
1253	{
1254	case 0:
1255	l1 = line.DrawLine(0, fRefQEInner, x, fRefQEInner);
1256	break;
1257	case 1:
1258	l1 = line.DrawLine(0, fRefConvFADC2PheInner, x, fRefConvFADC2PheInner);
1259	break;
1260	case 2:
1261	l1 = line.DrawLine(0, fRefFADC2PheInner, x, fRefFADC2PheInner );
1262	break;
1263	case 3:
1264	l1 = line.DrawLine(0, fRefArrivalTimeInner, x, fRefArrivalTimeInner );
1265	break;
1266	case 4:
1267	l1 = line.DrawLine(0, fRefArrivalTimeRmsInner, x, fRefArrivalTimeRmsInner );
1268	break;
1269	case 5:
1270	l1 = line.DrawLine(0, fRefTimeOffsetInner, x, fRefTimeOffsetInner );
1271	break;
1272	case 6:
1273	l1 = line.DrawLine(0, fRefTimeResolutionInner, x, fRefTimeResolutionInner );
1274	break;
1275	default:
1276	break;
1277	}
1278
1279	if (geom->InheritsFrom("MGeomCamMagic"))
1280	{
1281	const Double_t x2 = cam->GetNbinsX();
1282
1283	switch (what)
1284	{
1285	case 0:
1286	line.DrawLine(x2, fRefQEOuter, 398, fRefQEOuter);
1287	break;
1288	case 1:
1289	line.DrawLine(x2, fRefConvFADC2PheOuter, 398, fRefConvFADC2PheOuter );
1290	break;
1291	case 2:
1292	line.DrawLine(x2, fRefFADC2PheOuter, 398, fRefFADC2PheOuter);
1293	break;
1294	case 3:
1295	line.DrawLine(x2, fRefArrivalTimeOuter, 398, fRefArrivalTimeOuter);
1296	break;
1297	case 4:
1298	line.DrawLine(x2, fRefArrivalTimeRmsOuter, 398, fRefArrivalTimeRmsOuter);
1299	break;
1300	case 5:
1301	line.DrawLine(x2, fRefTimeOffsetOuter, 398, fRefTimeOffsetOuter);
1302	break;
1303	case 6:
1304	line.DrawLine(x2, fRefTimeResolutionOuter, 398, fRefTimeResolutionOuter);
1305	break;
1306	default:
1307	break;
1308	}
1309	}
1310
1311	TLegend *leg = new TLegend(0.6,0.85,0.9 ,0.95);
1312	leg->SetBit(kCanDelete);
1313	leg->AddEntry(l1, "Reference","l");
1314	leg->Draw();
1315	}
1316
1317	void MJCalibration::DisplayOutliers(TH1D hist, const char whatsmall, const char* whatbig) const
1318	{
1319
1320	const Int_t kNotDraw = 1<<9;
1321	TF1 *f = hist->GetFunction("gaus");
1322	f->ResetBit(kNotDraw);
1323
1324	const Float_t mean = f->GetParameter(1);
1325	const Float_t lolim = mean - 4.0*f->GetParameter(2);
1326	const Float_t uplim = mean + 4.0*f->GetParameter(2);
1327	const Stat_t dead = hist->Integral(0,hist->FindBin(lolim)-1);
1328	const Stat_t noisy = hist->Integral(hist->FindBin(uplim)+1,hist->GetNbinsX()+1);
1329
1330	const Double_t max = hist->GetBinContent(hist->GetMaximumBin());
1331
1332	const Double_t minl = hist->GetBinCenter(hist->GetXaxis()->GetFirst());
1333	const Double_t maxl = hist->GetBinCenter(hist->GetXaxis()->GetLast());
1334
1335	TLatex deadtex;
1336	deadtex.SetTextSize(0.07);
1337	deadtex.DrawLatex(minl+0.015*(maxl-minl),max/1.1,
1338	Form("%3i %s pixels",(Int_t)dead,whatsmall));
1339
1340	TLatex noisytex;
1341	noisytex.SetTextSize(0.07);
1342	noisytex.DrawLatex(minl+0.015*(maxl-minl),max/1.2,
1343	Form("%3i %s pixels",(Int_t)noisy,whatbig));
1344
1345	}
1346
1347	void MJCalibration::FixDataCheckHist(TH1D *hist) const
1348	{
1349
1350	hist->SetDirectory(NULL);
1351
1352	//
1353	// set the labels bigger
1354	//
1355	TAxis *xaxe = hist->GetXaxis();
1356	TAxis *yaxe = hist->GetYaxis();
1357
1358	xaxe->CenterTitle();
1359	yaxe->CenterTitle();
1360	xaxe->SetTitleSize(0.06);
1361	yaxe->SetTitleSize(0.06);
1362	xaxe->SetTitleOffset(0.8);
1363	yaxe->SetTitleOffset(0.85);
1364	xaxe->SetLabelSize(0.05);
1365	yaxe->SetLabelSize(0.05);
1366
1367	}
1368
1369	const Int_t MJCalibration::CountBadPixels(MHCamera *cam, const Int_t what) const
1370	{
1371	Int_t cnt = 0;
1372
1373	for (UInt_t pix=0; pix<cam->GetNumPixels(); pix++)
1374	if (TMath::Nint(cam->GetPixContent(pix)) == what)
1375	cnt++;
1376
1377	return cnt;
1378	}
1379
1380	// --------------------------------------------------------------------------
1381	//
1382	// Retrieve the output file written by WriteResult()
1383	//
1384	const char* MJCalibration::GetOutputFileName() const
1385	{
1386	return Form("calib%08d.root", fSequence.GetSequence());
1387	}
1388
1389	// --------------------------------------------------------------------------
1390	//
1391	// Read the following values from resource file:
1392	//
1393	// ConvFADC2PheMin
1394	// ConvFADC2PheMax
1395	// ConvFADC2PhotMin
1396	// ConvFADC2PhotMax
1397	//
1398	// QEMin
1399	// QEMax
1400	//
1401	// ArrivalTimeMin
1402	// ArrivalTimeMax
1403	//
1404	// TimeOffsetMin
1405	// TimeOffsetMax
1406	// TimeResolutionMin
1407	// TimeResolutionMax
1408	//
1409	// RefConvFADC2PheInner
1410	// RefConvFADC2PheOuter
1411	// RefConvFADC2PhotInner
1412	// RefConvFADC2PhotOuter
1413	//
1414	// RefQEInner
1415	// RefQEOuter
1416	//
1417	// RefArrivalTimeInner
1418	// RefArrivalTimeOuter
1419	// RefArrivalTimeRmsInner
1420	// RefArrivalTimeRmsOuter
1421	//
1422	// RefTimeOffsetInner
1423	// RefTimeOffsetOuter
1424	// RefTimeResolutionInner
1425	// RefTimeResolutionOuter
1426	//
1427	void MJCalibration::ReadReferenceFile()
1428	{
1429	TEnv refenv(fReferenceFile);
1430
1431	fConvFADC2PheMin = refenv.GetValue("ConvFADC2PheMin",fConvFADC2PheMin);
1432	fConvFADC2PheMax = refenv.GetValue("ConvFADC2PheMax",fConvFADC2PheMax);
1433	fConvFADC2PhotMin = refenv.GetValue("ConvFADC2PhotMin",fConvFADC2PhotMin);
1434	fConvFADC2PhotMax = refenv.GetValue("ConvFADC2PhotMax",fConvFADC2PhotMax);
1435	fQEMin = refenv.GetValue("QEMin",fQEMin);
1436	fQEMax = refenv.GetValue("QEMax",fQEMax);
1437	fArrivalTimeMin = refenv.GetValue("ArrivalTimeMin",fArrivalTimeMin);
1438	fArrivalTimeMax = refenv.GetValue("ArrivalTimeMax",fArrivalTimeMax);
1439	fTimeOffsetMin = refenv.GetValue("TimeOffsetMin",fTimeOffsetMin);
1440	fTimeOffsetMax = refenv.GetValue("TimeOffsetMax",fTimeOffsetMax);
1441	fTimeResolutionMin = refenv.GetValue("TimeResolutionMin",fTimeResolutionMin);
1442	fTimeResolutionMax = refenv.GetValue("TimeResolutionMax",fTimeResolutionMax);
1443
1444	fRefFADC2PheInner = refenv.GetValue("RefFADC2PheInner",fRefFADC2PheInner);
1445	fRefFADC2PheOuter = refenv.GetValue("RefFADC2PheOuter",fRefFADC2PheOuter);
1446	fRefConvFADC2PhotInner = refenv.GetValue("RefConvFADC2PhotInner",fRefConvFADC2PhotInner);
1447	fRefConvFADC2PhotOuter = refenv.GetValue("RefConvFADC2PhotOuter",fRefConvFADC2PhotOuter);
1448	fRefConvFADC2PheInner = refenv.GetValue("RefConvFADC2PheInner",fRefConvFADC2PheInner);
1449	fRefConvFADC2PheOuter = refenv.GetValue("RefConvFADC2PheOuter",fRefConvFADC2PheOuter);
1450	fRefQEInner = refenv.GetValue("RefQEInner",fRefQEInner);
1451	fRefQEOuter = refenv.GetValue("RefQEOuter",fRefQEOuter);
1452	fRefArrivalTimeInner = refenv.GetValue("RefArrivalTimeInner",fRefArrivalTimeInner);
1453	fRefArrivalTimeOuter = refenv.GetValue("RefArrivalTimeOuter",fRefArrivalTimeOuter);
1454	fRefArrivalTimeRmsInner = refenv.GetValue("RefArrivalTimeRmsInner",fRefArrivalTimeRmsInner);
1455	fRefArrivalTimeRmsOuter = refenv.GetValue("RefArrivalTimeRmsOuter",fRefArrivalTimeRmsOuter);
1456	fRefTimeOffsetInner = refenv.GetValue("RefTimeOffsetInner",fRefTimeOffsetInner);
1457	fRefTimeOffsetOuter = refenv.GetValue("RefTimeOffsetOuter",fRefTimeOffsetOuter);
1458	fRefTimeResolutionInner = refenv.GetValue("RefTimeResolutionInner",fRefTimeResolutionInner);
1459	fRefTimeResolutionOuter = refenv.GetValue("RefTimeResolutionOuter",fRefTimeResolutionOuter);
1460	}
1461
1462	// --------------------------------------------------------------------------
1463	//
1464	// Read the following values from resource file:
1465	//
1466	// MCalibrationHiLoCam
1467	//
1468	Bool_t MJCalibration::ReadHiLoCalibFile()
1469	{
1470
1471	if (!fIsHiLoCalibration)
1472	return kTRUE;
1473
1474	TFile file(fHiLoCalibFile,"READ");
1475	if (!file.IsOpen())
1476	{
1477	*fLog << err << "ERROR - Couldn't open file " << fHiLoCalibFile << " for reading... abort." << endl;
1478	return kFALSE;
1479	}
1480
1481	MCalibrationHiLoCam hilocam;
1482	if (hilocam.Read()<=0)
1483	{
1484	*fLog << err << "Unable to read MCalibrationHiLoCam from " << fHiLoCalibFile << "... abort." << endl;
1485	return kFALSE;
1486	}
1487	if (hilocam.GetSize() < 1)
1488	{
1489	*fLog << err << "MCalibationHiLoCam is un-initialized in file " << fHiLoCalibFile << "... abort." << endl;
1490	return kFALSE;
1491	}
1492
1493	*fLog << all << "Hi-/Lo-Gain intercalibration constants read from " << fHiLoCalibFile << endl << endl;
1494
1495	if (fCalibrationCam.GetSize() < 1)
1496	fCalibrationCam.InitSize(hilocam.GetSize());
1497
1498	if (fBadPixels.GetSize() < 1)
1499	fBadPixels.InitSize(hilocam.GetSize());
1500
1501	if (fCalibrationCam.GetSize() != hilocam.GetSize())
1502	{
1503	*fLog << err << "Size mismatch MCalibationHiLoCam and MCalibrationChargeCam.. abort." << endl;
1504	return kFALSE;
1505	}
1506
1507	for (Int_t i=0;i<hilocam.GetSize();i++)
1508	{
1509	const MCalibrationHiLoPix &pix = (MCalibrationHiLoPix&)hilocam[i];
1510
1511	const Float_t ratio = pix.GetHiLoChargeRatio();
1512	const Float_t raterr = pix.GetHiLoChargeRatioErr();
1513	const Float_t sigma = pix.GetHiLoChargeRatioSigma();
1514
1515	if (ratio < 0.)
1516	{
1517	fBadPixels[i].SetUncalibrated(MBadPixelsPix::kConversionHiLoNotValid);
1518	continue;
1519	}
1520
1521	MCalibrationChargePix &cpix = (MCalibrationChargePix&)fCalibrationCam[i];
1522
1523	cpix.SetConversionHiLo(ratio);
1524	cpix.SetConversionHiLoErr(raterr);
1525	cpix.SetConversionHiLoSigma(sigma);
1526	}
1527
1528	return kTRUE;
1529	}
1530
1531	// --------------------------------------------------------------------------
1532	//
1533	// MJCalibration allows to setup several option by a resource file:
1534	// MJCalibration.Display: full, datacheck, normal
1535	// MJCalibration.RelTimeCalibration: yes,no
1536	// MJCalibration.DataCheck: yes,no
1537	// MJCalibration.Debug: yes,no
1538	// MJCalibration.Intensity: yes,no
1539	// MJCalibration.UseBlindPixel: yes,no
1540	// MJCalibration.UsePINDiode: yes,no
1541	// MJCalibration.Geometry: MGeomCamMagic, MGeomCamECO1000
1542	//
1543	// Name of a file containing reference values (see ReadReferenceFile)
1544	// Prefix.ReferenceFile: filename
1545	// (see ReadReferenceFile)
1546	//
1547	// For more details see the class description and the corresponding Getters
1548	//
1549	Bool_t MJCalibration::CheckEnvLocal()
1550	{
1551	TString dis = GetEnv("Display", "");
1552	if (dis.BeginsWith("Full", TString::kIgnoreCase))
1553	SetFullDisplay();
1554	if (dis.BeginsWith("DataCheck", TString::kIgnoreCase))
1555	SetDataCheckDisplay();
1556	if (dis.BeginsWith("Normal", TString::kIgnoreCase))
1557	SetNormalDisplay();
1558
1559	if (!MJCalib::CheckEnvLocal())
1560	return kFALSE;
1561
1562	SetRelTimeCalibration(GetEnv("RelTimeCalibration", IsRelTimes()));
1563	SetIntensity(GetEnv("IntensityCalibration", IsIntensity()));
1564	SetDebug(GetEnv("Debug", IsDebug()));
1565
1566	SetUseBlindPixel(GetEnv("UseBlindPixel", IsUseBlindPixel()));
1567	SetUsePINDiode(GetEnv("UsePINDiode", IsUsePINDiode()));
1568	SetGeometry(GetEnv("Geometry", fGeometry));
1569
1570	fReferenceFile = GetEnv("ReferenceFile",fReferenceFile.Data());
1571	ReadReferenceFile();
1572
1573	fHiLoCalibFile = GetEnv("HiLoCalibFile",fHiLoCalibFile.Data());
1574
1575	if (IsUseMC() && !fHiLoCalibFile.EndsWith("_mc.root"))
1576	{
1577	if (!fHiLoCalibFile.EndsWith(".root"))
1578	{
1579	*fLog << warn << "WARNING - Hi-/Lo-Gain intercalibration file ";
1580	*fLog << fHiLoCalibFile << " has not .root as extension..." << endl;
1581	}
1582	else
1583	fHiLoCalibFile.Insert(fHiLoCalibFile.Length()-5, "_mc");
1584	}
1585
1586	return ReadHiLoCalibFile();
1587	}
1588
1589	void MJCalibration::InitBlindPixel(MExtractBlindPixel &blindext,
1590	MHCalibrationChargeBlindCam &blindcam)
1591	{
1592
1593	Int_t run = fSequence.GetLastRun();
1594
1595	//
1596	// Initialize the blind pixel. Unfortunately, there is a hardware difference
1597	// in the first blind pixel until run "gkSecondBlindPixelInstallation" and the
1598	// later setup. The first needs to use a filter because of the length of
1599	// spurious NSB photon signals. The latter get better along extracting the amplitude
1600	// from a small window.
1601	//
1602	if (run < gkSecondBlindPixelInstallation)
1603	{
1604	MCalibrationBlindCamOneOldStyle blindresults;
1605	if (IsIntensity())
1606	blindresults.Copy(*fIntensBlindCam.GetCam());
1607	else
1608	blindresults.Copy(fCalibrationBlindCam);
1609
1610	blindext.SetExtractionType(MExtractBlindPixel::kIntegral);
1611	blindext.SetExtractionType(MExtractBlindPixel::kFilter);
1612	blindext.SetRange(10,19,0,6);
1613	blindext.SetNSBFilterLimit(70);
1614	}
1615	else if (run < gkThirdBlindPixelInstallation)
1616	{
1617
1618	MCalibrationBlindCamTwoNewStyle blindresults;
1619
1620	if (IsIntensity())
1621	blindresults.Copy(*fIntensBlindCam.GetCam());
1622	else
1623	blindresults.Copy(fCalibrationBlindCam);
1624
1625	blindext.SetNumBlindPixels(blindresults.GetSize());
1626	for (Int_t i=0;i<blindresults.GetSize();i++)
1627	blindext.SetBlindPixelIdx(blindresults[i].GetPixId(),i);
1628
1629	blindext.SetExtractionType(MExtractBlindPixel::kAmplitude);
1630	blindext.SetExtractionType(MExtractBlindPixel::kFilter);
1631	blindext.SetRange(5,8,0,2);
1632	blindext.SetNSBFilterLimit(38);
1633
1634	}
1635	else
1636	{
1637
1638	MCalibrationBlindCamThreeNewStyle blindresults;
1639
1640	if (IsIntensity())
1641	blindresults.Copy(*fIntensBlindCam.GetCam());
1642	else
1643	blindresults.Copy(fCalibrationBlindCam);
1644
1645	blindext.SetNumBlindPixels(blindresults.GetSize());
1646
1647	for (Int_t i=0;i<blindresults.GetSize();i++)
1648	blindext.SetBlindPixelIdx(blindresults[i].GetPixId(),i);
1649
1650	blindext.SetExtractionType(MExtractBlindPixel::kAmplitude);
1651	blindext.SetExtractionType(MExtractBlindPixel::kFilter);
1652	blindext.SetDataType(MExtractBlindPixel::kRawEvt2);
1653	blindext.SetRange(5,8,0,2);
1654	blindext.SetNSBFilterLimit(38);
1655
1656	}
1657
1658	}
1659
1660	// --------------------------------------------------------------------------
1661	//
1662	// Execute the task list and the eventloop:
1663	//
1664	// - Check the colour of the files in fRuns (FindColor()), otherwise return
1665	// - Check for consistency between run numbers and number of files
1666	// - Add fRuns to MReadMarsFile
1667	// - Put into MParList:
1668	// 1) MPedestalCam (pedcam)
1669	// 2) MCalibrationQECam (fQECam)
1670	// 3) MCalibrationChargeCam (fCalibrationCam)
1671	// 4) MCalibrationRelTimeCam (fRelTimeCam) (only if flag IsRelTimes() is chosen)
1672	// 5) MBadPixelsCam (fBadPixels)
1673	// 6) MCalibrationChargePINDiode
1674	// 7) MCalibrationBlindPix
1675	// - Put into the MTaskList:
1676	// 1) MReadMarsFile
1677	// 2) MBadPixelsMerge
1678	// 3) MGeomApply
1679	// 4) MExtractor
1680	// 5) MExtractPINDiode
1681	// 6) MExtractBlindPixel
1682	// 7) MExtractTime (only if flag IsRelTimes() is chosen)
1683	// 8) MContinue(MFCosmics)
1684	// 9) MFillH("MHCalibrationChargePINDiode", "MExtractedSignalPINDiode", "FillPINDiode")
1685	// 10) MFillH("MHCalibrationChargeBlindCam", "MExtractedSignalBlindPixel", "FillBlindCam")
1686	// 11) MFillH("MHCalibrationChargeCam", "MExtractedSignalCam", "FillChargeCam")
1687	// 12) MFillH("MHCalibrationChargeCam", "MExtractedSignalCam", "FillRelTime")
1688	// 13) MCalibrationChargeCalc
1689	// 14) MFillH("MHCalibrationRelTimeCam", "MArrivalTimeCam") (only if flag IsRelTimes() is chosen)
1690	// 15) MCalibrationRelTimeCalc
1691	// - Execute MEvtLoop
1692	// - DisplayResult()
1693	// - WriteResult()
1694	//
1695	Bool_t MJCalibration::Process(MPedestalCam &pedcam)
1696	{
1697	if (!fSequence.IsValid())
1698	{
1699	*fLog << err << "ERROR - Sequence invalid..." << endl;
1700	return kFALSE;
1701	}
1702
1703	*fLog << inf;
1704	fLog->Separator(GetDescriptor());
1705	*fLog << "Calculate calibration constants from Sequence #";
1706	*fLog << fSequence.GetSequence() << endl << endl;
1707
1708	// --------------------------------------------------------------------------------
1709
1710	if (!CheckEnv())
1711	return kFALSE;
1712
1713	// --------------------------------------------------------------------------------
1714
1715	// Setup Tasklist
1716	MParList plist;
1717	MTaskList tlist;
1718	plist.AddToList(&tlist);
1719	plist.AddToList(this); // take care of fDisplay!
1720
1721	MDirIter iter;
1722	const Int_t n0 = fSequence.SetupCalRuns(iter, fPathData, IsUseRawData());
1723	const Int_t n1 = fSequence.GetNumCalRuns();
1724	if (n0==0)
1725	{
1726	*fLog << err << "ERROR - No input files of sequence found!" << endl;
1727	return kFALSE;
1728	}
1729	if (n0!=n1)
1730	{
1731	*fLog << err << "ERROR - Number of files found ("
1732	<< n0 << ") doesn't match number of files in sequence ("
1733	<< n1 << ")" << endl;
1734	if (fLog->GetDebugLevel()>4)
1735	{
1736	*fLog << dbg << "Files which are searched:" << endl;
1737	iter.Print();
1738	}
1739	return kFALSE;
1740	}
1741
1742	//
1743	// Input containers
1744	//
1745	pedcam.SetName("MPedestalCam"); // MPedestalFundamental
1746	plist.AddToList(&pedcam);
1747	plist.AddToList(&fBadPixels);
1748
1749	//
1750	// Calibration Results containers
1751	//
1752	if (IsIntensity())
1753	{
1754
1755	MCalibrationChargeCam cam = (MCalibrationChargeCam)fIntensCalibCam.GetCam();
1756	cam->InitSize(fCalibrationCam.GetSize());
1757	cam->MergeHiLoConversionFactors(fCalibrationCam);
1758
1759	plist.AddToList(&fIntensQECam);
1760	plist.AddToList(&fIntensCalibCam);
1761	// plist.AddToList(&fIntensCalibrationPINDiode);
1762	plist.AddToList(&fIntensRelTimeCam);
1763	plist.AddToList(&fIntensBadCam);
1764	if (IsUseBlindPixel())
1765	plist.AddToList(&fIntensBlindCam);
1766	}
1767	else
1768	{
1769	plist.AddToList(&fQECam);
1770	plist.AddToList(&fCalibrationCam);
1771	plist.AddToList(&fRelTimeCam);
1772	if (IsUseBlindPixel())
1773	plist.AddToList(&fCalibrationBlindCam);
1774	if (IsUsePINDiode())
1775	plist.AddToList(&fCalibrationPINDiode);
1776	}
1777
1778	//
1779	// Initialize two histogram containers which could be modified in this class
1780	//
1781	MHCalibrationRelTimeCam reltimecam;
1782	MHCalibrationChargeCam chargecam;
1783	MHCalibrationChargeBlindCam blindcam;
1784	plist.AddToList(&chargecam);
1785
1786	if (IsUseBlindPixel())
1787	plist.AddToList(&blindcam);
1788	if (IsRelTimes())
1789	plist.AddToList(&reltimecam);
1790	//
1791	// Data Reading tasks
1792	//
1793	MReadMarsFile read("Events");
1794	MRawFileRead rawread(NULL);
1795
1796	if (IsUseRawData())
1797	{
1798	rawread.AddFiles(iter);
1799	tlist.AddToList(&rawread);
1800	}
1801	else
1802	{
1803	read.DisableAutoScheme();
1804	read.AddFiles(iter);
1805	tlist.AddToList(&read);
1806	}
1807
1808	//
1809	// Other Tasks
1810	//
1811
1812	// Set the default for data version earlier than 5, where no valid
1813	// trigger pattern exists. There should not be pin diode or other
1814	// types of events inside the calibration files which should be skipped,
1815	// anyway. So we set the default such that the MContinue ccalib
1816	// will never be executed.
1817	MTriggerPatternDecode trgpat;
1818	MFTriggerPattern fcalib("CalibFilter");
1819	fcalib.SetDefault(kFALSE);
1820	fcalib.DenyCalibration(MFTriggerPattern::kPrescaled);
1821
1822	MContinue ccalib(&fcalib,"ContTrigPattern");
1823
1824	MCalibrationPatternDecode decode;
1825	MGeomApply apply;
1826	apply.SetGeometry(fGeometry);
1827
1828	MBadPixelsMerge merge(&fBadPixels);
1829	MExtractPINDiode pinext;
1830	MExtractBlindPixel blindext;
1831
1832	if (IsUseBlindPixel())
1833	InitBlindPixel(blindext, blindcam);
1834
1835	MExtractSlidingWindow extract2;
1836	MExtractTimeHighestIntegral timehigh;
1837	MCalibrationChargeCalc calcalc;
1838	MCalibrationRelTimeCalc timecalc;
1839	calcalc.SetExtractor(fExtractor);
1840	calcalc.SetOutputFile("");
1841	timecalc.SetOutputFile("");
1842
1843	if (IsDebug())
1844	{
1845	chargecam.SetDebug();
1846	calcalc.SetDebug();
1847	}
1848
1849	//
1850	// Calibration histogramming
1851	//
1852	MFillH fillpin("MHCalibrationChargePINDiode", "MExtractedSignalPINDiode", "FillPINDiode");
1853	MFillH fillbnd("MHCalibrationChargeBlindCam", "MExtractedSignalBlindPixel", "FillBlindCam");
1854	MFillH fillcam("MHCalibrationChargeCam", "MExtractedSignalCam", "FillChargeCam");
1855	MFillH filltme("MHCalibrationRelTimeCam", "MArrivalTimeCam", "FillRelTime");
1856	fillpin.SetBit(MFillH::kDoNotDisplay);
1857	fillbnd.SetBit(MFillH::kDoNotDisplay);
1858	fillcam.SetBit(MFillH::kDoNotDisplay);
1859	filltme.SetBit(MFillH::kDoNotDisplay);
1860
1861	//
1862	// Set default extractors in case, none has been set...
1863	//
1864	if (!fExtractor)
1865	fExtractor = &extract2;
1866	if (!fTimeExtractor)
1867	fTimeExtractor = &timehigh;
1868
1869	const Bool_t istimecharge = fExtractor->InheritsFrom("MExtractTimeAndCharge");
1870	//
1871	// Look if the extractor is a pure charge or also a time extractor
1872	//
1873	if (istimecharge)
1874	{
1875	if (fExtractorCam.GetSize() == pedcam.GetSize())
1876	calcalc.SetPedestals(&fExtractorCam);
1877	else
1878	{
1879	*fLog << err << GetDescriptor() << "ERROR - ";
1880	*fLog << "Used Extractor derives from MExtractTimeAndCharge, " << endl;
1881	*fLog << "but MExtractorCam size " << fExtractorCam.GetSize() << " ";
1882	*fLog << "mismatch pedcam size " << pedcam.GetSize() << "! " << endl;
1883	return kFALSE;
1884	}
1885	}
1886
1887	//
1888	// Setup more tasks and tasklist
1889	//
1890	MTaskEnv taskenv("ExtractSignal");
1891	taskenv.SetDefault(fExtractor);
1892
1893	tlist.AddToList(&trgpat);
1894	if (fColor != MCalibrationCam::kCT1)
1895	tlist.AddToList(&ccalib);
1896	tlist.AddToList(&decode);
1897	tlist.AddToList(&merge);
1898	tlist.AddToList(&apply);
1899
1900	MPedCalcPedRun pedcalc;
1901	pedcalc.SetExtractWindow(fExtractor->GetHiGainFirst(),TMath::Nint(fExtractor->GetNumHiGainSamples()));
1902
1903	if (IsIntensity())
1904	tlist.AddToList(&pedcalc);
1905
1906	MCalibColorSet colorset;
1907	if (fColor != MCalibrationCam::kNONE)
1908	colorset.SetExplicitColor(fColor);
1909	tlist.AddToList(&colorset);
1910
1911	tlist.AddToList(&taskenv);
1912
1913	if (IsUsePINDiode())
1914	tlist.AddToList(&pinext);
1915	if (IsUseBlindPixel())
1916	tlist.AddToList(&blindext);
1917
1918	MTaskEnv taskenv2("ExtractTime");
1919	if (!istimecharge)
1920	{
1921	taskenv2.SetDefault(fTimeExtractor);
1922
1923	if (IsRelTimes())
1924	tlist.AddToList(&taskenv2);
1925	}
1926
1927	//
1928	// Apply a filter against cosmics
1929	// (will have to be needed in the future
1930	// when the calibration hardware-trigger is working)
1931	//
1932	MFCosmics cosmics;
1933	cosmics.SetMaxEmptyPixels(0.05);
1934	cosmics.SetMaxAcceptedFraction(0.5); // max=0.5 cosmics
1935
1936	MContinue cont(&cosmics, "ContCosmics");
1937	tlist.AddToList(&cont);
1938
1939	MCalibColorSteer steer;
1940	if (IsIntensity())
1941	tlist.AddToList(&steer);
1942
1943	if (IsRelTimes())
1944	{
1945	tlist.AddToList(&filltme);
1946	tlist.AddToList(&timecalc);
1947	}
1948
1949	tlist.AddToList(&fillcam);
1950
1951	if (IsUseBlindPixel())
1952	tlist.AddToList(&fillbnd);
1953	if (IsUsePINDiode())
1954	tlist.AddToList(&fillpin);
1955
1956	tlist.AddToList(&calcalc);
1957
1958	// Create and setup the eventloop
1959	MEvtLoop evtloop(fName);
1960	evtloop.SetParList(&plist);
1961	evtloop.SetDisplay(fDisplay);
1962	evtloop.SetLogStream(fLog);
1963	if (!SetupEnv(evtloop))
1964	return kFALSE;
1965
1966	if (!taskenv.GetTask() && !taskenv2.GetTask())
1967	{
1968	*fLog << err << "ERROR - Neither ExtractSignal nor ExtractTime initialized or both '<dummy>'." << endl;
1969	return kFALSE;
1970	}
1971
1972	if (!WriteTasks(taskenv.GetTask(), istimecharge ? 0 : taskenv2.GetTask()))
1973	return kFALSE;
1974
1975	// Execute first analysis
1976	const Bool_t rc = evtloop.Eventloop();
1977
1978	if (!fCalibrationPINDiode.IsValid())
1979	SetUsePINDiode(kFALSE);
1980
1981	const Int_t numexec = IsUseRawData() ? rawread.GetNumExecutions() : read.GetNumExecutions();
1982	if (numexec>0)
1983	{
1984	DisplayResult(plist);
1985	if (!WriteResult(plist))
1986	return kFALSE;
1987	}
1988
1989	if (!rc)
1990	{
1991	*fLog << err << GetDescriptor() << ": Failed." << endl;
1992	return kFALSE;
1993	}
1994
1995	// --------------------------------------------------------------------------------
1996
1997	if (fIsPixelCheck)
1998	{
1999	chargecam[fCheckedPixId].DrawClone("datacheck");
2000	chargecam(fCheckedPixId).DrawClone("datacheck");
2001
2002	if (IsRelTimes())
2003	{
2004	reltimecam[fCheckedPixId].DrawClone("");
2005	reltimecam(fCheckedPixId).DrawClone("");
2006	}
2007	}
2008
2009	*fLog << all << GetDescriptor() << ": Done." << endl;
2010
2011	return kTRUE;
2012	}
2013
2014	/*
2015	Bool_t MJCalibration::WriteEventloop(MEvtLoop &evtloop) const
2016	{
2017	if (IsNoStorage())
2018	return kTRUE;
2019
2020	if (fPathOut.IsNull())
2021	return kTRUE;
2022
2023	const TString oname(GetOutputFile());
2024
2025	*fLog << inf << "Writing to file: " << oname << endl;
2026
2027	TFile file(oname, fOverwrite?"RECREATE":"NEW", "File created by MJCalibration", 9);
2028	if (!file.IsOpen())
2029	{
2030	*fLog << err << "ERROR - Couldn't open file " << oname << " for writing..." << endl;
2031	return kFALSE;
2032	}
2033
2034	if (evtloop.Write(fName)<=0)
2035	{
2036	*fLog << err << "Unable to write MEvtloop to " << oname << endl;
2037	return kFALSE;
2038	}
2039
2040	return kTRUE;
2041	}
2042	*/
2043
2044	Bool_t MJCalibration::WriteTasks(MTask t1, MTask t2) const
2045	{
2046	if (IsNoStorage())
2047	return kTRUE;
2048
2049	TObjArray cont;
2050	if (t1)
2051	cont.Add(t1);
2052	if (t2)
2053	cont.Add(t2);
2054
2055	return WriteContainer(cont, GetOutputFileName(), fOverwrite?"RECREATE":"NEW");
2056	}
2057
2058	// --------------------------------------------------------------------------
2059	//
2060	// Write the result into the output file GetOutputFile(), if fOutputPath exists.
2061	//
2062	// The following containers are written:
2063	// - MStatusDisplay
2064	// - MCalibrationChargeCam or MCalibrationIntensityChargeCam
2065	// - MCalibrationBlindCam or MCalibrationIntensityBlindCam
2066	// - MCalibrationQECam or MCalibrationIntensityQECam
2067	// - MCalibrationChargePINDiode
2068	// - MBadPixelsCam
2069	// If the flag kRelTimes is set, then also:
2070	// - MCalibrationRelTimeCam or MCalibrationIntensityRelTimeCam
2071	//
2072	Bool_t MJCalibration::WriteResult(MParList &plist)
2073	{
2074	if (IsNoStorage())
2075	return kTRUE;
2076
2077	TObjArray cont;
2078
2079	if (IsIntensity())
2080	{
2081	cont.Add(&fIntensBadCam);
2082	cont.Add(&fIntensCalibCam);
2083	cont.Add(&fIntensQECam);
2084	cont.Add(&fIntensBlindCam);
2085	}
2086	else
2087	{
2088	cont.Add(&fBadPixels);
2089	cont.Add(&fCalibrationCam);
2090	cont.Add(&fQECam);
2091	cont.Add(&fCalibrationBlindCam);
2092	}
2093	cont.Add(&fCalibrationPINDiode);
2094
2095	//if (IsRelTimes())
2096	cont.Add(IsIntensity() ? (TObject)&fIntensRelTimeCam : (TObject)&fRelTimeCam);
2097
2098	if (fExtractorCam.GetSize() != 0)
2099	cont.Add(&fExtractorCam);
2100
2101	TObject *pedcam = plist.FindObject("MPedestalCam");
2102	if (!pedcam)
2103	*fLog << warn << " - WARNING - MPedestalCam (fundamental)... not found for writing!" << endl;
2104	else
2105	cont.Add(pedcam);
2106
2107	TObject *geom = plist.FindObject("MGeomCam");
2108	if (!geom)
2109	*fLog << warn << " - WARNING - MGeomCam... not found for writing!" << endl;
2110	else
2111	cont.Add(geom);
2112
2113	if (IsHistsStorage())
2114	{
2115	cont.Add(plist.FindObject("MHCalibrationChargeCam"));
2116	cont.Add(plist.FindObject("MHCalibrationChargeBlindCam"));
2117	cont.Add(plist.FindObject("MHCalibrationChargePINDiode"));
2118	if (IsRelTimes())
2119	cont.Add(plist.FindObject("MHCalibrationRelTimeCam"));
2120	}
2121
2122	return WriteContainer(cont, GetOutputFileName(), "UPDATE");
2123	}
2124
2125	void MJCalibration::DisplayDoubleProject(MHCamera cam, const char whatsmall, const char* whatbig) const
2126	{
2127
2128	TArrayI inner(1);
2129	inner[0] = 0;
2130
2131	TArrayI outer(1);
2132	outer[0] = 1;
2133
2134	TArrayI s1(3);
2135	s1[0] = 6;
2136	s1[1] = 1;
2137	s1[2] = 2;
2138
2139	TArrayI s2(3);
2140	s2[0] = 3;
2141	s2[1] = 4;
2142	s2[2] = 5;
2143
2144	TVirtualPad *pad = gPad;
2145	pad->Divide(2,1);
2146
2147	TH1D *inout[2];
2148
2149	for (int i=0; i<2; i++)
2150	{
2151	pad->cd(i+1);
2152	gPad->SetBorderMode(0);
2153	gPad->SetTicks();
2154
2155	inout[i] = cam->ProjectionS(TArrayI(), TArrayI(1,&i), i==0 ? "Inner" : "Outer");
2156	FixDataCheckHist(inout[i]);
2157	inout[i]->SetTitle(Form("%s %s",cam->GetTitle(),i==0 ? "Inner" : "Outer"));
2158	inout[i]->SetDirectory(NULL);
2159	inout[i]->SetLineColor(kRed+i);
2160	inout[i]->SetBit(kCanDelete);
2161	inout[i]->Draw();
2162	//
2163	// Display the outliers as dead and noisy pixels
2164	//
2165	if (!inout[i]->Fit("gaus","0Q"))
2166	DisplayOutliers(inout[i],whatsmall,whatbig);
2167
2168	gPad->Modified();
2169	gPad->Update();
2170	TPaveStats st = (TPaveStats)inout[i]->GetListOfFunctions()->FindObject("stats");
2171	st->SetY1NDC(0.6);
2172	st->SetY2NDC(0.9);
2173	st->SetX1NDC(0.55);
2174	st->SetX2NDC(0.99);
2175	gPad->Modified();
2176	gPad->Update();
2177
2178	TLegend *leg2 = new TLegend(0.55,0.4,0.99,0.6);
2179
2180	//
2181	// Display the two half of the camera separately
2182	//
2183	TH1D *half[2];
2184	half[0] = cam->ProjectionS(s1, TArrayI(1,&i), "Sector 6-1-2");
2185	half[1] = cam->ProjectionS(s2, TArrayI(1,&i), "Sector 3-4-5");
2186
2187	for (int j=0; j<2; j++)
2188	{
2189	half[j]->SetLineColor(kRed+i+2*j+1);
2190	half[j]->SetDirectory(NULL);
2191	half[j]->SetBit(kCanDelete);
2192	half[j]->Draw("same");
2193	leg2->AddEntry(half[j], half[j]->GetName(), "l");
2194	}
2195	leg2->Draw();
2196	}
2197	}

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