| 1 | #!/bin/bash
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| 2 |
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| 3 | today=`date +%F`
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| 4 | logfile=/home/`whoami`/DataCheck/log/FillAuxData$today.log
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| 5 |
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| 6 | # steps:
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| 7 | # select run# from DB - no, date is given
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| 8 | # get daily files
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| 9 | # select file# from DB
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| 10 | # select start and stop from DB
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| 11 | # get info from files
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| 12 | # fill into into DB
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| 13 |
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| 14 |
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| 15 | doupdate="yes" # update all entries
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| 16 | doupdate="no" # fill only entries which are not yet existing
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| 17 |
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| 18 | echo "" >> $logfile 2>&1
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| 19 | echo "" >> $logfile 2>&1
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| 20 | echo "" >> $logfile 2>&1
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| 21 | echo `date`"executing "$0"..." >> $logfile 2>&1
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| 22 | echo "=====> doupdate: "$doupdate >> $logfile 2>&1
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| 23 |
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| 24 | password=`cat /home/fact/DataCheck/.pw`
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| 25 | if [ "$password" == "" ]
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| 26 | then
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| 27 | echo "please insert password in .pw file"
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| 28 | fi
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| 29 |
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| 30 | # setup to use ftools
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| 31 | export HEADAS=/opt/heasoft-6.11/x86_64-unknown-linux-gnu-libc2.13-0/
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| 32 | source $HEADAS/headas-init.sh
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| 33 |
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| 34 | # get last 2 nights
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| 35 | dates=( `date +%Y/%m/%d --date="-12hour"` `date +%Y/%m/%d --date="-36hour"` `date +%Y/%m/%d --date="-60hour"` )
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| 36 | #dates=( "2011/11/29" )
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| 37 | # problems with 2011/11/29
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| 38 |
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| 39 | # do rsync for rawfiles of these dates
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| 40 | for date in ${dates[@]}
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| 41 | do
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| 42 | echo "" >> $logfile 2>&1
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| 43 | echo "" >> $logfile 2>&1
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| 44 | echo "" >> $logfile 2>&1
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| 45 | auxdir=/loc_data/aux/$date
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| 46 | runnumber=`echo $date | sed -e 's/\///g'`
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| 47 | echo `date`": processing files in "$auxdir >> $logfile 2>&1
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| 48 | # check if data are available from that night
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| 49 | if ! [ -d $auxdir ]
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| 50 | then
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| 51 | echo `date`": no data available in "$auxdir >> $logfile 2>&1
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| 52 | continue
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| 53 | fi
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| 54 |
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| 55 | # get daily fits files
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| 56 | trackingfile=$auxdir/$runnumber.DRIVE_CONTROL_TRACKING_POSITION.fits
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| 57 | if ! [ -e $trackingfile ]
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| 58 | then
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| 59 | echo $trackingfile" not found"
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| 60 | fi
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| 61 | triggerratefile=$auxdir/$runnumber.FTM_CONTROL_TRIGGER_RATES.fits
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| 62 | if ! [ -e $triggerratefile ]
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| 63 | then
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| 64 | echo $triggerratefile" not found"
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| 65 | fi
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| 66 | thresholdfile=$auxdir/$runnumber.FTM_CONTROL_STATIC_DATA.fits
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| 67 | if ! [ -e $thresholdfile ]
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| 68 | then
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| 69 | echo $thresholdfile" not found"
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| 70 | fi
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| 71 | biasvoltagefile=$auxdir/$runnumber.BIAS_CONTROL_VOLTAGE.fits
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| 72 | if ! [ -e $biasvoltagefile ]
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| 73 | then
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| 74 | echo $biasvoltagefile" not found"
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| 75 | fi
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| 76 | biascurrentsfile=$auxdir/$runnumber.BIAS_CONTROL_CURRENT.fits
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| 77 | if ! [ -e $biascurrentsfile ]
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| 78 | then
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| 79 | echo $biascurrentsfile" not found"
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| 80 | fi
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| 81 |
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| 82 | # get file numbers from DB
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| 83 | query1="SELECT fFileNumber from RunInfo WHERE fRunNumber="$runnumber
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| 84 | filenumbers=( `/usr/bin/mysql -u operator --host=fact01.fact.local --password=$password FactData -s -e "$query1" 2>> $logfile` )
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| 85 | for filenum in ${filenumbers[@]}
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| 86 | do
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| 87 | #echo $filenum
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| 88 | #query2="SELECT fRunStart from RunInfo WHERE fRunNumber="$runnumber" AND fFileNumber="$filenum
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| 89 | #starttime=`/usr/bin/mysql -u operator --host=fact01.fact.local --password=$password FactData -s -e "$query2" 2>> $logfile`
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| 90 | #query3="SELECT fRunStop from RunInfo WHERE fRunNumber="$runnumber" AND fFileNumber="$filenum
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| 91 | #stoptime=`/usr/bin/mysql -u operator --host=fact01.fact.local --password=$password FactData -s -e "$query3" 2>> $logfile`
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| 92 | #echo "start: "$starttime
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| 93 | #echo "stop: "$stoptime
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| 94 | rawfile=/loc_data/raw/$date/$runnumber"_"`printf %03d $filenum`.fits
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| 95 | if ! [ -e $trackingfile ]
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| 96 | then
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| 97 | echo "ERROR: "$rawfile" not found."
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| 98 | continue
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| 99 | #else
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| 100 | # echo $rawfile
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| 101 | fi
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| 102 | checkfitsfile=`fverify $rawfile 2>> $logfile | grep '0 error(s)'`
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| 103 | if [ "$checkfitsfile" == "" ]
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| 104 | then
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| 105 | numfitserrors=1
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| 106 | echo "WARN: "$rawfile" probably corrupted."
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| 107 | continue
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| 108 | fi
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| 109 | runtype=`/home/fact/FACT++/fitsdump -h -t Events $rawfile 2>/dev/null | grep RUNTYPE | grep -E -o "['][a-z-]+[']" | sed -e "s/'//g"`
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| 110 | #echo " runtype: "$runtype
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| 111 | #/home/fact/FACT++/fitsdump -h -t Events $rawfile
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| 112 | mjdref=`/home/fact/FACT++/fitsdump -h -t Events $rawfile 2>/dev/null | grep 'MJDREF' | grep -E -o '[0-9]{5}'`
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| 113 | tstarti=`/home/fact/FACT++/fitsdump -h -t Events $rawfile 2>/dev/null | grep 'TSTARTI' | grep -E -o '[0-9]{5}'`
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| 114 | tstartf=`/home/fact/FACT++/fitsdump -h -t Events $rawfile 2>/dev/null | grep 'TSTARTF' | grep -E -o '0[.][0-9]+'`
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| 115 | tstopi=`/home/fact/FACT++/fitsdump -h -t Events $rawfile 2>/dev/null | grep 'TSTOPI' | grep -E -o '[0-9]{5}'`
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| 116 | tstopf=`/home/fact/FACT++/fitsdump -h -t Events $rawfile 2>/dev/null | grep 'TSTOPF' | grep -E -o '0[.][0-9]+'`
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| 117 | if [ "$tstarti" == "" ] || [ "$tstopi" == "" ]
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| 118 | then
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| 119 | echo "WARN: "$rawfile" has start or stop time = 0."
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| 120 | continue
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| 121 | fi
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| 122 | # calculate start and stop times
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| 123 | tstart=`echo " $tstarti + $mjdref + $tstartf " | bc -l`
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| 124 | tstart2=`echo " $tstarti + $mjdref + $tstartf - 0.00011574 " | bc -l` # 10 sec
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| 125 | #tstart2=`echo " $tstarti + $mjdref + $tstartf - 0.000023148 " | bc -l` # 2 sec
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| 126 | tstop=`echo " $tstopi + $mjdref + $tstopf " | bc -l`
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| 127 | #echo " tstart in mjd: "$tstart
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| 128 | #echo " tstop in mjd: "$tstop
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| 129 | query0="UPDATE RunInfo SET "
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| 130 | queryend=" WHERE fRunNumber="$runnumber" AND fFileNumber="$filenum
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| 131 |
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| 132 | # get information from tracking
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| 133 | #echo $trackingfile
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| 134 | ramin=`ftcopy $trackingfile'[Time> '${tstart}' && Time< '${tstop}'][col Ra;Time]' - | ftcopy -'[col Ra]' - | ftstat - | grep 'min' | grep -E -o '[0-9][.][0-9]+'`
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| 135 | ramax=`ftcopy $trackingfile'[Time> '${tstart}' && Time< '${tstop}'][col Ra;Time]' - | ftcopy -'[col Ra]' - | ftstat - | grep 'max' | grep -E -o '[0-9][.][0-9]+'`
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| 136 | ramean=`ftcopy $trackingfile'[Time> '${tstart}' && Time< '${tstop}'][col Ra;Time]' - | ftcopy -'[col Ra]' - | ftstat - | grep 'mean' | grep -E -o '[0-9][.][0-9]+'`
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| 137 | decmin=`ftcopy $trackingfile'[Time> '${tstart}' && Time< '${tstop}'][col Dec;Time]' - | ftcopy -'[col Dec]' - | ftstat - | grep 'min' | grep -E -o '[0-9][.][0-9]+'`
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| 138 | decmax=`ftcopy $trackingfile'[Time> '${tstart}' && Time< '${tstop}'][col Dec;Time]' - | ftcopy -'[col Dec]' - | ftstat - | grep 'max' | grep -E -o '[0-9][.][0-9]+'`
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| 139 | decmean=`ftcopy $trackingfile'[Time> '${tstart}' && Time< '${tstop}'][col Dec;Time]' - | ftcopy -'[col Dec]' - | ftstat - | grep 'mean' | grep -E -o '[0-9][.][0-9]+'`
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| 140 | #echo " ra: "$ramin" - "$ramean" - "$ramax
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| 141 | if [ "$ramin" == "$ramax" ] && [ "$ramean" != "" ]
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| 142 | then
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| 143 | query0=$query0" fRightAscension="$ramean
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| 144 | else
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| 145 | query0=$query0" fRightAscension=NULL"
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| 146 | fi
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| 147 | #echo " dec: "$decmin" - "$decmean" - "$decmax
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| 148 | if [ "$decmin" == "$decmax" ] && [ "$decmean" != "" ]
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| 149 | then
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| 150 | query0=$query0", fDeclination="$decmean
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| 151 | else
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| 152 | query0=$query0", fDeclination=NULL"
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| 153 | fi
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| 154 |
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| 155 | # get information from trigger
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| 156 | #echo $triggerratefile
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| 157 | #ftcopy $triggerratefile'[Time> '${tstart}' && Time< '${tstop}' && TriggerRate!=-1][col TriggerRate;Time]' - | ftcopy -'[col TriggerRate]' - | ftstat -
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| 158 | ratemin=`ftcopy $triggerratefile'[Time> '${tstart}' && Time< '${tstop}' && TriggerRate!=-1][col TriggerRate;Time]' - | ftcopy -'[col TriggerRate]' - | ftstat - | grep 'min' | grep -E -o '[0-9]+[.]?[0-9]*'`
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| 159 | ratemax=`ftcopy $triggerratefile'[Time> '${tstart}' && Time< '${tstop}' && TriggerRate!=-1][col TriggerRate;Time]' - | ftcopy -'[col TriggerRate]' - | ftstat - | grep 'max' | grep -E -o '[0-9]+[.]?[0-9]*'`
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| 160 | ratemean=`ftcopy $triggerratefile'[Time> '${tstart}' && Time< '${tstop}' && TriggerRate!=-1][col TriggerRate;Time]' - | ftcopy -'[col TriggerRate]' - | ftstat - | grep 'mean' | grep -E -o '[0-9]+[.]?[0-9]*'`
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| 161 | ratemedian=`ftcopy $triggerratefile'[Time> '${tstart}' && Time< '${tstop}' && TriggerRate!=-1][col TriggerRate;Time]' - | ftcopy -'[col TriggerRate]' - | ftstat - | grep 'median' | grep -E -o '[0-9]+[.]?[0-9]*'`
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| 162 | #echo " rate: "$ratemin" - "$ratemedian" - "$ratemean" - "$ratemax
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| 163 | if [ "$ratemedian" != "0" ]
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| 164 | then
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| 165 | query0=$query0", fTriggerRateMedian="$ratemedian
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| 166 | else
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| 167 | query0=$query0", fTriggerRateMedian=NULL"
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| 168 | fi
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| 169 |
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| 170 | # get information from trigger
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| 171 | #echo $thresholdfile
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| 172 | #echo "ftcopy $thresholdfile'[Time> '${tstart}' && Time< '${tstop}'][col PatchThresh;Time]' - | ftcopy -'[col PatchThresh]' - | ftstat -"
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| 173 | threshmin=`ftcopy $thresholdfile'[Time> '${tstart}' && Time< '${tstop}'][col PatchThresh;Time]' - | ftcopy -'[col PatchThresh]' - | ftstat - | grep 'min' | grep -E -o '[0-9]+[.]?[0-9]*'`
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| 174 | threshmax=`ftcopy $thresholdfile'[Time> '${tstart}' && Time< '${tstop}'][col PatchThresh;Time]' - | ftcopy -'[col PatchThresh]' - | ftstat - | grep 'max' | grep -E -o '[0-9]+[.]?[0-9]*'`
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| 175 | threshmean=`ftcopy $thresholdfile'[Time> '${tstart}' && Time< '${tstop}'][col PatchThresh;Time]' - | ftcopy -'[col PatchThresh]' - | ftstat - | grep 'mean' | grep -E -o '[0-9]+[.]?[0-9]*'`
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| 176 | threshmedian=`ftcopy $thresholdfile'[Time> '${tstart}' && Time< '${tstop}'][col PatchThresh;Time]' - | ftcopy -'[col PatchThresh]' - | ftstat - | grep 'median' | grep -E -o '[0-9]+[.]?[0-9]*'`
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| 177 | #echo " threshold: "$threshmin" - "$threshmedian" - "$threshmean" - "$threshmax
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| 178 | if [ "$threshmean" == "0" ]
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| 179 | then
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| 180 | #echo "ftcopy $thresholdfile'[Time> '${tstart2}' && Time< '${tstop}'][col PatchThresh;Time]' - | ftcopy -'[col PatchThresh]' - | ftstat -"
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| 181 | threshmin=`ftcopy $thresholdfile'[Time> '${tstart2}' && Time< '${tstop}'][col PatchThresh;Time]' - | ftcopy -'[col PatchThresh]' - | ftstat - | grep 'min' | grep -E -o '[0-9]+[.]?[0-9]*'`
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| 182 | threshmax=`ftcopy $thresholdfile'[Time> '${tstart2}' && Time< '${tstop}'][col PatchThresh;Time]' - | ftcopy -'[col PatchThresh]' - | ftstat - | grep 'max' | grep -E -o '[0-9]+[.]?[0-9]*'`
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| 183 | threshmean=`ftcopy $thresholdfile'[Time> '${tstart2}' && Time< '${tstop}'][col PatchThresh;Time]' - | ftcopy -'[col PatchThresh]' - | ftstat - | grep 'mean' | grep -E -o '[0-9]+[.]?[0-9]*'`
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| 184 | threshmedian=`ftcopy $thresholdfile'[Time> '${tstart2}' && Time< '${tstop}'][col PatchThresh;Time]' - | ftcopy -'[col PatchThresh]' - | ftstat - | grep 'median' | grep -E -o '[0-9]+[.]?[0-9]*'`
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| 185 | #echo " threshold: "$threshmin" - "$threshmedian" - "$threshmean" - "$threshmax
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| 186 | # is this taking into account the 160 values in a row?
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| 187 | fi
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| 188 | query0=$query0", fThresholdMedian="$threshmedian
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| 189 |
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| 190 | # # get information from bias: Uref
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| 191 | # #echo $biasvoltagefile
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| 192 | # #echo "ftcopy $biasvoltagefile'[Time> '${tstart}' && Time< '${tstop}'][col Uref;Time]' - | ftcopy -'[col Uref]' - | ftstat -"
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| 193 | # biasvoltrefmin=`ftcopy $biasvoltagefile'[Time> '${tstart}' && Time< '${tstop}'][col Uref;Time]' - | ftcopy -'[col Uref]' - | ftstat - | grep 'min' | grep -E -o '[0-9]+[.]?[0-9]*'`
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| 194 | # biasvoltrefmax=`ftcopy $biasvoltagefile'[Time> '${tstart}' && Time< '${tstop}'][col Uref;Time]' - | ftcopy -'[col Uref]' - | ftstat - | grep 'max' | grep -E -o '[0-9]+[.]?[0-9]*'`
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| 195 | # biasvoltrefmean=`ftcopy $biasvoltagefile'[Time> '${tstart}' && Time< '${tstop}'][col Uref;Time]' - | ftcopy -'[col Uref]' - | ftstat - | grep 'mean' | grep -E -o '[0-9]+[.]?[0-9]*'`
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| 196 | # biasvoltrefmedian=`ftcopy $biasvoltagefile'[Time> '${tstart}' && Time< '${tstop}'][col Uref;Time]' - | ftcopy -'[col Uref]' - | ftstat - | grep 'median' | grep -E -o '[0-9]+[.]?[0-9]*'`
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| 197 | # echo " bias: "$biasvoltrefmin" - "$biasvoltrefmedian" - "$biasvoltrefmean" - "$biasvoltrefmax
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| 198 | # if [ "$biasvoltmean" == "0" ]
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| 199 | # then
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| 200 | # #echo "ftcopy $biasvoltagefile'[Time> '${tstart2}' && Time< '${tstop}'][col Uref;Time]' - | ftcopy -'[col Uref]' - | ftstat -"
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| 201 | # biasvoltrefmin=`ftcopy $biasvoltagefile'[Time> '${tstart2}' && Time< '${tstop}'][col Uref;Time]' - | ftcopy -'[col Uref]' - | ftstat - | grep 'min' | grep -E -o '[0-9]+[.]?[0-9]*'`
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| 202 | # biasvoltrefmax=`ftcopy $biasvoltagefile'[Time> '${tstart2}' && Time< '${tstop}'][col Uref;Time]' - | ftcopy -'[col Uref]' - | ftstat - | grep 'max' | grep -E -o '[0-9]+[.]?[0-9]*'`
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| 203 | # biasvoltrefmean=`ftcopy $biasvoltagefile'[Time> '${tstart2}' && Time< '${tstop}'][col Uref;Time]' - | ftcopy -'[col Uref]' - | ftstat - | grep 'mean' | grep -E -o '[0-9]+[.]?[0-9]*'`
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| 204 | # biasvoltrefmedian=`ftcopy $biasvoltagefile'[Time> '${tstart2}' && Time< '${tstop}'][col Uref;Time]' - | ftcopy -'[col Uref]' - | ftstat - | grep 'median' | grep -E -o '[0-9]+[.]?[0-9]*'`
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| 205 | # echo " bias: "$biasvoltrefmin" - "$biasvoltrefmedian" - "$biasvoltrefmean" - "$biasvoltrefmax
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| 206 | # # is this taking into account the 160 values in a row?
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| 207 | # fi
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| 208 |
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| 209 | # get information from bias: U
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| 210 | #echo $biasvoltagefile
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| 211 | #echo "ftcopy $biasvoltagefile'[Time> '${tstart}' && Time< '${tstop}'][col U;Time]' - | ftcopy -'[col U]' - | ftstat -"
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| 212 | biasvoltmin=`ftcopy $biasvoltagefile'[Time> '${tstart}' && Time< '${tstop}'][col U;Time]' - | ftcopy -'[col U]' - | ftstat - | grep 'min' | grep -E -o '[0-9]+[.]?[0-9]*'`
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| 213 | biasvoltmax=`ftcopy $biasvoltagefile'[Time> '${tstart}' && Time< '${tstop}'][col U;Time]' - | ftcopy -'[col U]' - | ftstat - | grep 'max' | grep -E -o '[0-9]+[.]?[0-9]*'`
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| 214 | biasvoltmean=`ftcopy $biasvoltagefile'[Time> '${tstart}' && Time< '${tstop}'][col U;Time]' - | ftcopy -'[col U]' - | ftstat - | grep 'mean' | grep -E -o '[0-9]+[.]?[0-9]*'`
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| 215 | biasvoltmedian=`ftcopy $biasvoltagefile'[Time> '${tstart}' && Time< '${tstop}'][col U;Time]' - | ftcopy -'[col U]' - | ftstat - | grep 'median' | grep -E -o '[0-9]+[.]?[0-9]*'`
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| 216 | #echo " bias: "$biasvoltmin" - "$biasvoltmedian" - "$biasvoltmean" - "$biasvoltmax
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| 217 | if [ "$biasvoltmean" == "0" ]
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| 218 | then
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| 219 | #echo "ftcopy $biasvoltagefile'[Time> '${tstart2}' && Time< '${tstop}'][col U;Time]' - | ftcopy -'[col U]' - | ftstat -"
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| 220 | biasvoltmin=`ftcopy $biasvoltagefile'[Time> '${tstart2}' && Time< '${tstop}'][col U;Time]' - | ftcopy -'[col U]' - | ftstat - | grep 'min' | grep -E -o '[0-9]+[.]?[0-9]*'`
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| 221 | biasvoltmax=`ftcopy $biasvoltagefile'[Time> '${tstart2}' && Time< '${tstop}'][col U;Time]' - | ftcopy -'[col U]' - | ftstat - | grep 'max' | grep -E -o '[0-9]+[.]?[0-9]*'`
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| 222 | biasvoltmean=`ftcopy $biasvoltagefile'[Time> '${tstart2}' && Time< '${tstop}'][col U;Time]' - | ftcopy -'[col U]' - | ftstat - | grep 'mean' | grep -E -o '[0-9]+[.]?[0-9]*'`
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| 223 | biasvoltmedian=`ftcopy $biasvoltagefile'[Time> '${tstart2}' && Time< '${tstop}'][col U;Time]' - | ftcopy -'[col U]' - | ftstat - | grep 'median' | grep -E -o '[0-9]+[.]?[0-9]*'`
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| 224 | #echo " bias: "$biasvoltmin" - "$biasvoltmedian" - "$biasvoltmean" - "$biasvoltmax
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| 225 | # is this taking into account the 160 values in a row?
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| 226 | fi
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| 227 | query0=$query0", fBiasVoltageMedian="$biasvoltmedian
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| 228 |
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| 229 | query0=$query0" "$queryend
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| 230 |
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| 231 | if ! /usr/bin/mysql -u operator --host=fact01.fact.local --password=$password FactData -e "$query0" >> $logfile 2>&1
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| 232 | then
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| 233 | echo "insert/update of "$runnumber" "$filenum" to mysql failed" >> $logfile 2>&1
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| 234 | echo "Q0: "$query0" --- query failed."
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| 235 | fi
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| 236 | done
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| 237 | done
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| 238 |
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| 239 |
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