| 1 | #!/bin/bash
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| 2 |
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| 3 | # missing:
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| 4 | # vferify of files
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| 5 | # only treat file if it is there
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| 6 |
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| 7 | # mjd of 1970-01-01
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| 8 | # needed in this script as for 1 day the mjd in the aux files are inconsistent
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| 9 | mjdref=40587
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| 10 |
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| 11 | # option
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| 12 | doupdate="yes" # update all entries (needed when new fields have been added)
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| 13 | doupdate="no" # fill only entries which are not yet existing (default)
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| 14 |
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| 15 | source `dirname $0`/Sourcefile.sh
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| 16 | printprocesslog "INFO starting $0 with option doupdate="$doupdate
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| 17 |
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| 18 | # setup to use ftools
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| 19 | source $HEADAS/headas-init.sh
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| 20 |
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| 21 | pwfile=`dirname $0`/.pw
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| 22 | password=`cat $pwfile 2>/dev/null`
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| 23 | if [ "$password" == "" ]
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| 24 | then
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| 25 | echo "please insert password in $pwfile"
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| 26 | printprocesslog "ERROR password for DB access in $pwfile missing"
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| 27 | finish
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| 28 | fi
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| 29 |
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| 30 | # check if software is available
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| 31 | if ! ls $factpath/fitsdump >/dev/null 2>&1
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| 32 | then
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| 33 | printprocesslog "ERROR "$factpath"/fitsdump is not available."
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| 34 | finish
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| 35 | fi
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| 36 |
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| 37 | # get last 2 nights
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| 38 | dates=( `date +%Y/%m/%d --date="-12hour"` `date +%Y/%m/%d --date="-36hour"` `date +%Y/%m/%d --date="-60hour"` )
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| 39 | #dates=( `date +%Y/%m/%d --date="-12hour"` )
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| 40 | dates=( "2011/12/07" )
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| 41 | # problems with 2011/11/29
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| 42 | dates=( `find /loc_data/zipraw/ -mindepth 3 -type d | sort | sed -e 's/\/loc_data\/zipraw\///g'` ) #all available dates in /loc_data/zipraw
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| 43 | printprocesslog "INFO processing the following night: "${dates[@]}
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| 44 |
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| 45 | # do filling of aux data
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| 46 | for date in ${dates[@]}
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| 47 | do
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| 48 | auxdir=$auxdata/$date
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| 49 | runnumber=`echo $date | sed -e 's/\///g'`
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| 50 | # check if data are available from that night
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| 51 | if ! [ -d $auxdir ]
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| 52 | then
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| 53 | printprocesslog "INFO no data available in "$auxdir
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| 54 | continue
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| 55 | else
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| 56 | printprocesslog "INFO processing files in "$auxdir
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| 57 | fi
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| 58 |
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| 59 | # get daily fits files
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| 60 | trackingfile=$auxdir/$runnumber.DRIVE_CONTROL_TRACKING_POSITION.fits
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| 61 | if ! [ -e $trackingfile ]
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| 62 | then
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| 63 | printprocesslog "WARN "$trackingfile" not found."
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| 64 | fi
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| 65 | triggerratefile=$auxdir/$runnumber.FTM_CONTROL_TRIGGER_RATES.fits
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| 66 | if ! [ -e $triggerratefile ]
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| 67 | then
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| 68 | printprocesslog "WARN "$triggerratefile" not found."
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| 69 | fi
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| 70 | thresholdfile=$auxdir/$runnumber.FTM_CONTROL_STATIC_DATA.fits
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| 71 | if ! [ -e $thresholdfile ]
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| 72 | then
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| 73 | printprocesslog "WARN "$thresholdfile" not found."
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| 74 | fi
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| 75 | biasvoltagefile=$auxdir/$runnumber.BIAS_CONTROL_VOLTAGE.fits
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| 76 | if ! [ -e $biasvoltagefile ]
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| 77 | then
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| 78 | printprocesslog "WARN "$biasvoltagefile" not found."
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| 79 | fi
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| 80 | biascurrentsfile=$auxdir/$runnumber.BIAS_CONTROL_CURRENT.fits
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| 81 | if ! [ -e $biascurrentsfile ]
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| 82 | then
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| 83 | printprocesslog "WARN "$biascurrentsfile" not found."
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| 84 | fi
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| 85 |
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| 86 |
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| 87 |
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| 88 | # get file numbers from DB
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| 89 | query1="SELECT fFileNumber from RunInfo WHERE fRunNumber="$runnumber
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| 90 | printprocesslog "DEBUG get filenumbers from DB: QUERY: "$query1
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| 91 | filenumbers=( `/usr/bin/mysql -u operator --host=fact01.fact.local --password=$password FactData -s -e "$query1" 2>/dev/null` )
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| 92 | for filenum in ${filenumbers[@]}
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| 93 | do
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| 94 | printprocesslog "INFO processing file number "$filenum
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| 95 |
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| 96 | # get information from rawfile
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| 97 | rawfile=/loc_data/raw/$date/$runnumber"_"`printf %03d $filenum`.fits
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| 98 | if ! [ -e $rawfile ]
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| 99 | then
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| 100 | printprocesslog "ERROR: "$rawfile" not found."
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| 101 | continue
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| 102 | fi
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| 103 | checkfitsfile=`fverify $rawfile 2>/dev/null | grep '0 error(s)'`
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| 104 | if [ "$checkfitsfile" == "" ]
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| 105 | then
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| 106 | numfitserrors=1
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| 107 | printprocesslog "WARN: "$rawfile" probably corrupted."
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| 108 | continue
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| 109 | fi
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| 110 | runtype=`$factpath/fitsdump -h -t Events $rawfile 2>/dev/null | grep RUNTYPE | grep -E -o "['][a-z-]+[']" | sed -e "s/'//g"`
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| 111 | mjdrefraw=`$factpath/fitsdump -h -t Events $rawfile 2>/dev/null | grep 'MJDREF' | grep -E -o '[0-9]{5}'`
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| 112 | tstarti=`$factpath/fitsdump -h -t Events $rawfile 2>/dev/null | grep 'TSTARTI' | grep -E -o '[0-9]{5}'`
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| 113 | tstartf=`$factpath/fitsdump -h -t Events $rawfile 2>/dev/null | grep 'TSTARTF' | grep -E -o '0[.][0-9]+'`
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| 114 | tstopi=`$factpath/fitsdump -h -t Events $rawfile 2>/dev/null | grep 'TSTOPI' | grep -E -o '[0-9]{5}'`
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| 115 | tstopf=`$factpath/fitsdump -h -t Events $rawfile 2>/dev/null | grep 'TSTOPF' | grep -E -o '0[.][0-9]+'`
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| 116 | if [ "$tstarti" == "" ] || [ "$tstopi" == "" ]
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| 117 | then
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| 118 | printprocesslog "WARN: "$rawfile" has start or stop time = 0."
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| 119 | continue
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| 120 | fi
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| 121 | tstart=`echo " $tstarti + $tstartf + $mjdrefraw " | bc -l`
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| 122 | tstart2=`echo " $tstarti + $tstartf + $mjdrefraw - 0.00011574 " | bc -l` # 10 sec
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| 123 | #tstart2=`echo " $tstarti + $tstartf + $mjdrefraw - 0.000023148 " | bc -l` # 2 sec
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| 124 | tstop=`echo " $tstopi + $tstopf + $mjdrefraw " | bc -l`
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| 125 | # calculate start and stop times
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| 126 | # 2011/11/22 MJDREF in DRIVE empty, Time > 55000
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| 127 | # 2011/11/23 MJDREF in DRIVE not empty, Time > 55000
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| 128 | # 2011/11/24 MJDREF in DRIVE not empty, Time > 15000
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| 129 | # raw files
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| 130 | # 2011/11/21 no MJDREF
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| 131 | # 2011/11/22 MJDREF
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| 132 | if [ $runnumber -eq 20111123 ]
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| 133 | then
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| 134 | # add mjdref for days were aux files were inconsistent
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| 135 | tstart=`echo " $tstart + $mjdref " | bc -l`
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| 136 | tstart2=`echo " $tstart2 + $mjdref " | bc -l`
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| 137 | tstop=`echo " $tstop + $mjdref " | bc -l`
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| 138 | fi
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| 139 |
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| 140 | # build query to update runinfo in DB
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| 141 | query0="UPDATE RunInfo SET "
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| 142 | queryend=" WHERE fRunNumber="$runnumber" AND fFileNumber="$filenum
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| 143 |
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| 144 | # get information from tracking
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| 145 | if [ -e $trackingfile ]
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| 146 | then
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| 147 | ramin=`ftcopy $trackingfile'[Time> '${tstart}' - MJDREF && Time< '${tstop}' - MJDREF][col Ra;Time]' - | ftcopy -'[col Ra]' - | ftstat - | grep 'min' | grep -E -o '[-]*[0-9]+[.]*[0-9]*'`
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| 148 | ramax=`ftcopy $trackingfile'[Time> '${tstart}' - MJDREF && Time< '${tstop}' - MJDREF][col Ra;Time]' - | ftcopy -'[col Ra]' - | ftstat - | grep 'max' | grep -E -o '[-]*[0-9]+[.]*[0-9]*'`
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| 149 | ramean=`ftcopy $trackingfile'[Time> '${tstart}' - MJDREF && Time< '${tstop}' - MJDREF][col Ra;Time]' - | ftcopy -'[col Ra]' - | ftstat - | grep 'mean' | grep -E -o '[-]*[0-9]+[.]*[0-9]*'`
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| 150 | decmin=`ftcopy $trackingfile'[Time> '${tstart}' - MJDREF && Time< '${tstop}' - MJDREF][col Dec;Time]' - | ftcopy -'[col Dec]' - | ftstat - | grep 'min' | grep -E -o '[-]*[0-9]+[.]*[0-9]*'`
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| 151 | decmax=`ftcopy $trackingfile'[Time> '${tstart}' - MJDREF && Time< '${tstop}' - MJDREF][col Dec;Time]' - | ftcopy -'[col Dec]' - | ftstat - | grep 'max' | grep -E -o '[-]*[0-9]+[.]*[0-9]*'`
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| 152 | decmean=`ftcopy $trackingfile'[Time> '${tstart}' - MJDREF && Time< '${tstop}' - MJDREF][col Dec;Time]' - | ftcopy -'[col Dec]' - | ftstat - | grep 'mean' | grep -E -o '[-]*[0-9]+[.]*[0-9]*'`
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| 153 | zdmin=`ftcopy $trackingfile'[Time> '${tstart}' - MJDREF && Time< '${tstop}' - MJDREF][col Zd;Time]' - | ftcopy -'[col Zd]' - | ftstat - | grep 'min' | grep -E -o '[-]*[0-9]+[.]*[0-9]*'`
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| 154 | zdmax=`ftcopy $trackingfile'[Time> '${tstart}' - MJDREF && Time< '${tstop}' - MJDREF][col Zd;Time]' - | ftcopy -'[col Zd]' - | ftstat - | grep 'max' | grep -E -o '[-]*[0-9]+[.]*[0-9]*'`
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| 155 | zdmean=`ftcopy $trackingfile'[Time> '${tstart}' - MJDREF && Time< '${tstop}' - MJDREF][col Zd;Time]' - | ftcopy -'[col Zd]' - | ftstat - | grep 'mean' | grep -E -o '[-]*[0-9]+[.]*[0-9]*'`
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| 156 | azmin=`ftcopy $trackingfile'[Time> '${tstart}' - MJDREF && Time< '${tstop}' - MJDREF][col Az;Time]' - | ftcopy -'[col Az]' - | ftstat - | grep 'min' | grep -E -o '[-]*[0-9]+[.]*[0-9]*'`
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| 157 | azmax=`ftcopy $trackingfile'[Time> '${tstart}' - MJDREF && Time< '${tstop}' - MJDREF][col Az;Time]' - | ftcopy -'[col Az]' - | ftstat - | grep 'max' | grep -E -o '[-]*[0-9]+[.]*[0-9]*'`
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| 158 | azmean=`ftcopy $trackingfile'[Time> '${tstart}' - MJDREF && Time< '${tstop}' - MJDREF][col Az;Time]' - | ftcopy -'[col Az]' - | ftstat - | grep 'mean' | grep -E -o '[-]*[0-9]+[.]*[0-9]*'`
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| 159 | # RA
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| 160 | if [ "$ramin" == "$ramax" ] && [ "$ramean" != "0" ]
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| 161 | then
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| 162 | query0=$query0" fRightAscension="$ramean
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| 163 | else
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| 164 | query0=$query0" fRightAscension=NULL"
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| 165 | fi
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| 166 | # Declination
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| 167 | if [ "$decmin" == "$decmax" ] && [ "$decmean" != "0" ]
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| 168 | then
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| 169 | query0=$query0", fDeclination="$decmean
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| 170 | else
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| 171 | query0=$query0", fDeclination=NULL"
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| 172 | fi
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| 173 | # Zd
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| 174 | if [ "$zdmin" != "" ] && [ "$zdmean" != "0" ]
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| 175 | then
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| 176 | query0=$query0", fZenithDistanceMin="$zdmin
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| 177 | else
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| 178 | query0=$query0", fZenithDistanceMin=NULL"
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| 179 | fi
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| 180 | if [ "$zdmean" != "" ] && [ "$zdmean" != "0" ]
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| 181 | then
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| 182 | query0=$query0", fZenithDistanceMean="$zdmean
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| 183 | else
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| 184 | query0=$query0", fZenithDistanceMean=NULL"
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| 185 | fi
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| 186 | if [ "$zdmax" != "" ] && [ "$zdmean" != "0" ]
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| 187 | then
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| 188 | query0=$query0", fZenithDistanceMax="$zdmax
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| 189 | else
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| 190 | query0=$query0", fZenithDistanceMax=NULL"
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| 191 | fi
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| 192 | # Az
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| 193 | if [ "$azmin" != "" ] && [ "$azmean" != "0" ]
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| 194 | then
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| 195 | query0=$query0", fAzimuthMin="$azmin
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| 196 | else
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| 197 | query0=$query0", fAzimuthMin=NULL"
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| 198 | fi
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| 199 | if [ "$azmean" != "" ] && [ "$azmean" != "0" ]
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| 200 | then
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| 201 | query0=$query0", fAzimuthMean="$azmean
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| 202 | else
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| 203 | query0=$query0", fAzimuthMean=NULL"
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| 204 | fi
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| 205 | if [ "$azmax" != "" ] && [ "$azmean" != "0" ]
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| 206 | then
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| 207 | query0=$query0", fAzimuthMax="$azmax
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| 208 | else
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| 209 | query0=$query0", fAzimuthMax=NULL"
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| 210 | fi
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| 211 | fi
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| 212 |
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| 213 | # get information from trigger
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| 214 | if ! [ -e $triggerratefile ]
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| 215 | then
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| 216 | ratemin=`ftcopy $triggerratefile'[Time> '${tstart}' - MJDREF && Time< '${tstop}' - MJDREF && TriggerRate!=-1][col TriggerRate;Time]' - | ftcopy -'[col TriggerRate]' - | ftstat - | grep 'min' | grep -E -o '[0-9]+[.]?[0-9]*'`
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| 217 | ratemax=`ftcopy $triggerratefile'[Time> '${tstart}' - MJDREF && Time< '${tstop}' - MJDREF && TriggerRate!=-1][col TriggerRate;Time]' - | ftcopy -'[col TriggerRate]' - | ftstat - | grep 'max' | grep -E -o '[0-9]+[.]?[0-9]*'`
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| 218 | ratemean=`ftcopy $triggerratefile'[Time> '${tstart}' - MJDREF && Time< '${tstop}' - MJDREF && TriggerRate!=-1][col TriggerRate;Time]' - | ftcopy -'[col TriggerRate]' - | ftstat - | grep 'mean' | grep -E -o '[0-9]+[.]?[0-9]*'`
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| 219 | ratemedian=`ftcopy $triggerratefile'[Time> '${tstart}' - MJDREF && Time< '${tstop}' - MJDREF && TriggerRate!=-1][col TriggerRate;Time]' - | ftcopy -'[col TriggerRate]' - | ftstat - | grep 'median' | grep -E -o '[0-9]+[.]?[0-9]*'`
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| 220 | if [ "$ratemedian" != "0" ]
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| 221 | then
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| 222 | query0=$query0", fTriggerRateMedian="$ratemedian
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| 223 | else
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| 224 | query0=$query0", fTriggerRateMedian=NULL"
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| 225 | fi
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| 226 | fi
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| 227 |
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| 228 | # get information from thresholds
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| 229 | if ! [ -e $thresholdfile ]
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| 230 | then
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| 231 | threshmin=`ftcopy $thresholdfile'[Time> '${tstart}' - MJDREF && Time< '${tstop}' - MJDREF][col PatchThresh;Time]' - | ftcopy -'[col PatchThresh]' - | ftstat - | grep 'min' | grep -E -o '[0-9]+[.]?[0-9]*'`
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| 232 | threshmax=`ftcopy $thresholdfile'[Time> '${tstart}' - MJDREF && Time< '${tstop}' - MJDREF][col PatchThresh;Time]' - | ftcopy -'[col PatchThresh]' - | ftstat - | grep 'max' | grep -E -o '[0-9]+[.]?[0-9]*'`
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| 233 | threshmean=`ftcopy $thresholdfile'[Time> '${tstart}' - MJDREF && Time< '${tstop}' - MJDREF][col PatchThresh;Time]' - | ftcopy -'[col PatchThresh]' - | ftstat - | grep 'mean' | grep -E -o '[0-9]+[.]?[0-9]*'`
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| 234 | threshmedian=`ftcopy $thresholdfile'[Time> '${tstart}' - MJDREF && Time< '${tstop}' - MJDREF][col PatchThresh;Time]' - | ftcopy -'[col PatchThresh]' - | ftstat - | grep 'median' | grep -E -o '[0-9]+[.]?[0-9]*'`
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| 235 | if [ "$threshmean" == "0" ]
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| 236 | then
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| 237 | threshmin=`ftcopy $thresholdfile'[Time> '${tstart2}' - MJDREF && Time< '${tstop}' - MJDREF][col PatchThresh;Time]' - | ftcopy -'[col PatchThresh]' - | ftstat - | grep 'min' | grep -E -o '[0-9]+[.]?[0-9]*'`
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| 238 | threshmax=`ftcopy $thresholdfile'[Time> '${tstart2}' - MJDREF && Time< '${tstop}' - MJDREF][col PatchThresh;Time]' - | ftcopy -'[col PatchThresh]' - | ftstat - | grep 'max' | grep -E -o '[0-9]+[.]?[0-9]*'`
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| 239 | threshmean=`ftcopy $thresholdfile'[Time> '${tstart2}' - MJDREF && Time< '${tstop}' - MJDREF][col PatchThresh;Time]' - | ftcopy -'[col PatchThresh]' - | ftstat - | grep 'mean' | grep -E -o '[0-9]+[.]?[0-9]*'`
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| 240 | threshmedian=`ftcopy $thresholdfile'[Time> '${tstart2}' - MJDREF && Time< '${tstop}' - MJDREF][col PatchThresh;Time]' - | ftcopy -'[col PatchThresh]' - | ftstat - | grep 'median' | grep -E -o '[0-9]+[.]?[0-9]*'`
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| 241 | # is this taking into account the 160 values in a row?
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| 242 | fi
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| 243 | query0=$query0", fThresholdMedian="$threshmedian
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| 244 | fi
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| 245 |
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| 246 | # # get information from bias: Uref
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| 247 | # biasvoltrefmin=`ftcopy $biasvoltagefile'[Time> '${tstart}' && Time< '${tstop}'][col Uref;Time]' - | ftcopy -'[col Uref]' - | ftstat - | grep 'min' | grep -E -o '[0-9]+[.]?[0-9]*'`
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| 248 | # biasvoltrefmax=`ftcopy $biasvoltagefile'[Time> '${tstart}' && Time< '${tstop}'][col Uref;Time]' - | ftcopy -'[col Uref]' - | ftstat - | grep 'max' | grep -E -o '[0-9]+[.]?[0-9]*'`
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| 249 | # biasvoltrefmean=`ftcopy $biasvoltagefile'[Time> '${tstart}' && Time< '${tstop}'][col Uref;Time]' - | ftcopy -'[col Uref]' - | ftstat - | grep 'mean' | grep -E -o '[0-9]+[.]?[0-9]*'`
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| 250 | # biasvoltrefmedian=`ftcopy $biasvoltagefile'[Time> '${tstart}' && Time< '${tstop}'][col Uref;Time]' - | ftcopy -'[col Uref]' - | ftstat - | grep 'median' | grep -E -o '[0-9]+[.]?[0-9]*'`
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| 251 | # if [ "$biasvoltmean" == "0" ]
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| 252 | # then
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| 253 | # biasvoltrefmin=`ftcopy $biasvoltagefile'[Time> '${tstart2}' && Time< '${tstop}'][col Uref;Time]' - | ftcopy -'[col Uref]' - | ftstat - | grep 'min' | grep -E -o '[0-9]+[.]?[0-9]*'`
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| 254 | # biasvoltrefmax=`ftcopy $biasvoltagefile'[Time> '${tstart2}' && Time< '${tstop}'][col Uref;Time]' - | ftcopy -'[col Uref]' - | ftstat - | grep 'max' | grep -E -o '[0-9]+[.]?[0-9]*'`
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| 255 | # biasvoltrefmean=`ftcopy $biasvoltagefile'[Time> '${tstart2}' && Time< '${tstop}'][col Uref;Time]' - | ftcopy -'[col Uref]' - | ftstat - | grep 'mean' | grep -E -o '[0-9]+[.]?[0-9]*'`
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| 256 | # biasvoltrefmedian=`ftcopy $biasvoltagefile'[Time> '${tstart2}' && Time< '${tstop}'][col Uref;Time]' - | ftcopy -'[col Uref]' - | ftstat - | grep 'median' | grep -E -o '[0-9]+[.]?[0-9]*'`
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| 257 | # # is this taking into account the 160 values in a row?
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| 258 | # fi
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| 259 |
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| 260 | # get information from bias: U
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| 261 | if ! [ -e $biasvoltagefile ]
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| 262 | then
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| 263 | biasvoltmin=`ftcopy $biasvoltagefile'[Time> '${tstart}' - MJDREF && Time< '${tstop}' - MJDREF][col U;Time]' - | ftcopy -'[col U]' - | ftstat - | grep 'min' | grep -E -o '[0-9]+[.]?[0-9]*'`
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| 264 | biasvoltmax=`ftcopy $biasvoltagefile'[Time> '${tstart}' - MJDREF && Time< '${tstop}' - MJDREF][col U;Time]' - | ftcopy -'[col U]' - | ftstat - | grep 'max' | grep -E -o '[0-9]+[.]?[0-9]*'`
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| 265 | biasvoltmean=`ftcopy $biasvoltagefile'[Time> '${tstart}' - MJDREF && Time< '${tstop}' - MJDREF][col U;Time]' - | ftcopy -'[col U]' - | ftstat - | grep 'mean' | grep -E -o '[0-9]+[.]?[0-9]*'`
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| 266 | biasvoltmedian=`ftcopy $biasvoltagefile'[Time> '${tstart}' - MJDREF && Time< '${tstop}' - MJDREF][col U;Time]' - | ftcopy -'[col U]' - | ftstat - | grep 'median' | grep -E -o '[0-9]+[.]?[0-9]*'`
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| 267 | if [ "$biasvoltmean" == "0" ]
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| 268 | then
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| 269 | biasvoltmin=`ftcopy $biasvoltagefile'[Time> '${tstart2}' - MJDREF && Time< '${tstop}' - MJDREF][col U;Time]' - | ftcopy -'[col U]' - | ftstat - | grep 'min' | grep -E -o '[0-9]+[.]?[0-9]*'`
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| 270 | biasvoltmax=`ftcopy $biasvoltagefile'[Time> '${tstart2}' - MJDREF && Time< '${tstop}' - MJDREF][col U;Time]' - | ftcopy -'[col U]' - | ftstat - | grep 'max' | grep -E -o '[0-9]+[.]?[0-9]*'`
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| 271 | biasvoltmean=`ftcopy $biasvoltagefile'[Time> '${tstart2}' - MJDREF && Time< '${tstop}' - MJDREF][col U;Time]' - | ftcopy -'[col U]' - | ftstat - | grep 'mean' | grep -E -o '[0-9]+[.]?[0-9]*'`
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| 272 | biasvoltmedian=`ftcopy $biasvoltagefile'[Time> '${tstart2}' - MJDREF && Time< '${tstop}' - MJDREF][col U;Time]' - | ftcopy -'[col U]' - | ftstat - | grep 'median' | grep -E -o '[0-9]+[.]?[0-9]*'`
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| 273 | # is this taking into account the 160 values in a row?
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| 274 | fi
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| 275 | query0=$query0", fBiasVoltageMedian="$biasvoltmedian
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| 276 | fi
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| 277 |
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| 278 | query0=$query0" "$queryend
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| 279 | printprocesslog "DEBUG update DB entry with QUERY: "$query0
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| 280 | # send query to DB
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| 281 | if ! /usr/bin/mysql -u operator --host=fact01.fact.local --password=$password FactData -e "$query0" >/dev/null 2>&1
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| 282 | then
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| 283 | printprocesslog "ERROR insert/update of "$runnumber" "$filenum" to mysql failed."
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| 284 | fi
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| 285 | done
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| 286 | done
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| 287 |
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| 288 | finish
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| 289 |
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| 290 |
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