| 1 | #!/bin/bash
|
|---|
| 2 |
|
|---|
| 3 | # this script has been written to run on La Palma on the machine data
|
|---|
| 4 | # i.e. paths are only working on this machine
|
|---|
| 5 | # the script starts from the zipped files
|
|---|
| 6 | # this causes a delay until files are in the database
|
|---|
| 7 | # because they have to be rsynced and zipped first (see RsyncRawData.sh, ZipRawData.sh)
|
|---|
| 8 | #
|
|---|
| 9 | # starting from 2012/06/05 the keywords CHECKSUM and DATASUM are
|
|---|
| 10 | # available in the fits header of the rawfile
|
|---|
| 11 | # starting from this time the md5sums are not calculated anymore
|
|---|
| 12 | #
|
|---|
| 13 |
|
|---|
| 14 | # todo
|
|---|
| 15 | # tempfile for fitsdump -h output
|
|---|
| 16 |
|
|---|
| 17 | # options:
|
|---|
| 18 | skipmd5sum="no" # fill md5 sums in any case
|
|---|
| 19 | skipmd5sum="iffilled" # fill md5 sum only if they are not yet in db # default
|
|---|
| 20 | skipmd5sum="yes" # do not fill md5 sums in any case #new default since 2012/06/05 when the checksum is available in heaser
|
|---|
| 21 |
|
|---|
| 22 | doupdate="yes" # update all entries
|
|---|
| 23 | doupdate="no" # fill only entries which are not yet existing #default
|
|---|
| 24 |
|
|---|
| 25 | source `dirname $0`/../Sourcefile.sh
|
|---|
| 26 | printprocesslog "INFO starting $0 with options doupdate="$doupdate" and skipmd5sum="$skipmd5sum
|
|---|
| 27 |
|
|---|
| 28 | # setup to use ftools
|
|---|
| 29 | source $HEADAS/headas-init.sh
|
|---|
| 30 |
|
|---|
| 31 | # check if software is available
|
|---|
| 32 | if ! ls $factpath/fitsdump >/dev/null 2>&1
|
|---|
| 33 | then
|
|---|
| 34 | printprocesslog "ERROR "$factpath"/fitsdump is not available."
|
|---|
| 35 | finish
|
|---|
| 36 | fi
|
|---|
| 37 |
|
|---|
| 38 | # check if paths are available
|
|---|
| 39 | if ! ls /daq/raw >/dev/null 2>&1
|
|---|
| 40 | then
|
|---|
| 41 | printprocesslog "ERROR /daq/raw is not available."
|
|---|
| 42 | finish
|
|---|
| 43 | fi
|
|---|
| 44 | if ! ls /loc_data/raw >/dev/null 2>&1
|
|---|
| 45 | then
|
|---|
| 46 | printprocesslog "ERROR /loc_data/raw is not available."
|
|---|
| 47 | finish
|
|---|
| 48 | fi
|
|---|
| 49 | if ! ls /loc_data/zipraw >/dev/null 2>&1
|
|---|
| 50 | then
|
|---|
| 51 | printprocesslog "ERROR /loc_data/zipraw is not available."
|
|---|
| 52 | finish
|
|---|
| 53 | fi
|
|---|
| 54 |
|
|---|
| 55 | # get last 3, 6 or 9 nights
|
|---|
| 56 | dates=( `date +%Y/%m/%d --date="-12hour"` `date +%Y/%m/%d --date="-36hour"` `date +%Y/%m/%d --date="-60hour"` \
|
|---|
| 57 | # `date +%Y/%m/%d --date="-84hour"` `date +%Y/%m/%d --date="-108hour"` `date +%Y/%m/%d --date="-132hour"` \
|
|---|
| 58 | # `date +%Y/%m/%d --date="-156hour"` `date +%Y/%m/%d --date="-180hour"` `date +%Y/%m/%d --date="-204hour"` \
|
|---|
| 59 | )
|
|---|
| 60 | #dates=( `find /loc_data/zipraw/ -mindepth 3 -type d | sort | sed -e 's/\/loc_data\/zipraw\///g'` ) #all available dates in /loc_data/zipraw
|
|---|
| 61 | #dates=( `find /loc_data/aux/ -mindepth 3 -type d | sort | sed -e 's/\/loc_data\/aux\///g'` ) #all available dates in /loc_data/zipraw
|
|---|
| 62 |
|
|---|
| 63 | # do check for rawfiles of these dates
|
|---|
| 64 | for date in ${dates[@]}
|
|---|
| 65 | do
|
|---|
| 66 | date2=`echo $date | sed -e 's/\///g'`
|
|---|
| 67 | night=
|
|---|
| 68 | query="SELECT fNight FROM AuxFilesAvailISDCStatus WHERE fNight="$date2
|
|---|
| 69 | night=`sendquery`
|
|---|
| 70 | if [ "$night" == "" ]
|
|---|
| 71 | then
|
|---|
| 72 | printprocesslog "INFO insert "$date2" to AuxFilesAvailISDCStatus"
|
|---|
| 73 | query="INSERT AuxFilesAvailISDCStatus SET fNight="$date2", fPriority="$date2
|
|---|
| 74 | sendquery >/dev/null 2>&1
|
|---|
| 75 | fi
|
|---|
| 76 | night=
|
|---|
| 77 | query="SELECT fNight FROM DriveFileAvailISDCStatus WHERE fNight="$date2
|
|---|
| 78 | night=`sendquery`
|
|---|
| 79 | if [ "$night" == "" ]
|
|---|
| 80 | then
|
|---|
| 81 | printprocesslog "INFO insert "$date2" to DriveFileAvailISDCStatus"
|
|---|
| 82 | query="INSERT DriveFileAvailISDCStatus SET fNight="$date2", fPriority="$date2
|
|---|
| 83 | sendquery >/dev/null 2>&1
|
|---|
| 84 | fi
|
|---|
| 85 | night=
|
|---|
| 86 | query="SELECT fNight FROM AuxDataInsertStatus WHERE fNight="$date2
|
|---|
| 87 | night=`sendquery`
|
|---|
| 88 | if [ "$night" == "" ]
|
|---|
| 89 | then
|
|---|
| 90 | printprocesslog "INFO insert "$date2" to AuxDataInsertStatus"
|
|---|
| 91 | query="INSERT AuxDataInsertStatus SET fNight="$date2", fPriority="$date2
|
|---|
| 92 | sendquery >/dev/null 2>&1
|
|---|
| 93 | fi
|
|---|
| 94 | ziprawdir=/loc_data/zipraw/$date
|
|---|
| 95 | # check if data are available from that night
|
|---|
| 96 | if ! [ -d $ziprawdir ]
|
|---|
| 97 | then
|
|---|
| 98 | printprocesslog "INFO "$ziprawdir" does not exist."
|
|---|
| 99 | continue
|
|---|
| 100 | else
|
|---|
| 101 | printprocesslog "INFO processing "$ziprawdir"..."
|
|---|
| 102 | fi
|
|---|
| 103 |
|
|---|
| 104 | # find all fits.gz files starting with the oldest file
|
|---|
| 105 | printprocesslog "INFO finding files to be checked in $ziprawdir..."
|
|---|
| 106 | fitsgzfiles=`find $ziprawdir -type f -name '*.fits.gz'| sort `
|
|---|
| 107 |
|
|---|
| 108 | # get runnumber from date
|
|---|
| 109 | runnumber=`echo $date | sed -e 's/\///g'`
|
|---|
| 110 |
|
|---|
| 111 | # loop to check files
|
|---|
| 112 | for file in $fitsgzfiles
|
|---|
| 113 | do
|
|---|
| 114 | filecorrupt="no"
|
|---|
| 115 | printprocesslog "INFO checking file "$file
|
|---|
| 116 | #echo "INFO checking file "$file" at "`date`
|
|---|
| 117 |
|
|---|
| 118 | # raw and original file
|
|---|
| 119 | # file: /loc_data/zipraw
|
|---|
| 120 | # rawfile: /loc_data/raw
|
|---|
| 121 | # origfile: /daq/raw
|
|---|
| 122 | rawfile=`echo $file | sed -e 's/zipraw/raw/' -e 's/fits[.]gz/fits/'`
|
|---|
| 123 | origfile=`echo $rawfile | sed -e 's/loc_data/daq/'`
|
|---|
| 124 |
|
|---|
| 125 | # check if it is drs file
|
|---|
| 126 | isdrs=`ls $file | grep drs`
|
|---|
| 127 | if [ "$isdrs" != "" ]
|
|---|
| 128 | then
|
|---|
| 129 | printprocesslog "INFO "$file" is a drs file. -> continue"
|
|---|
| 130 | continue
|
|---|
| 131 | fi
|
|---|
| 132 |
|
|---|
| 133 | # check if file is already finished
|
|---|
| 134 | # original file on daq (if data was taken on daq
|
|---|
| 135 | if [ -e $origfile ]
|
|---|
| 136 | then
|
|---|
| 137 | # check if raw file was changed in the last 30 minutes
|
|---|
| 138 | isnew=`find $origfile -cmin -30`
|
|---|
| 139 | if [ "$isnew" != "" ]
|
|---|
| 140 | then
|
|---|
| 141 | printprocesslog "WARN "$origfile" is not older than 30 min. -> continue"
|
|---|
| 142 | continue
|
|---|
| 143 | fi
|
|---|
| 144 |
|
|---|
| 145 | # get time of last modification as seconds since Epoch for both files
|
|---|
| 146 | timeorig=`stat -c %Y $origfile`
|
|---|
| 147 | timecopy=`stat -c %Y $rawfile`
|
|---|
| 148 | # compare times
|
|---|
| 149 | if ! [ $timeorig -eq $timecopy ]
|
|---|
| 150 | then
|
|---|
| 151 | # if times are not the same, the file is still open => no check
|
|---|
| 152 | printprocesslog "INFO file "$rawfile" not yet closed. -> continue"
|
|---|
| 153 | continue
|
|---|
| 154 | fi
|
|---|
| 155 | else
|
|---|
| 156 | # if the origfile doesn't exist, the data was probably written not on daq but on data
|
|---|
| 157 | printprocesslog "INFO file "$rawfile" was probably taken on data and not daq."
|
|---|
| 158 | fi
|
|---|
| 159 |
|
|---|
| 160 | # get run and file number form filename
|
|---|
| 161 | runnumbererror="no"
|
|---|
| 162 | numbererror="no"
|
|---|
| 163 | numberfromname=`echo $file | grep -E -o '20[1-9][0-9][01][0-9][0-3][0-9]_[0-9]{3}'`
|
|---|
| 164 | runnumberfromname=`echo $numberfromname | cut -d_ -f1`
|
|---|
| 165 | filenumberfromname=`echo $numberfromname | cut -d_ -f2 | sed -e 's/^0//g' -e 's/^0//g'`
|
|---|
| 166 | if [ "$runnumber" != "$runnumberfromname" ]
|
|---|
| 167 | then
|
|---|
| 168 | runnumbererror="yes"
|
|---|
| 169 | printprocesslog "ERROR for file "$file": runnumber from date ("$runnumber") and filename ("$runnumberfromname") don't agree."
|
|---|
| 170 | fi
|
|---|
| 171 |
|
|---|
| 172 | # check if entry already exists
|
|---|
| 173 | query="SELECT fNight FROM RunInfo WHERE Concat(fNight, '_', LPAD(fRunID, 3, 0))='"$numberfromname"'"
|
|---|
| 174 | printprocesslog "DEBUG check if entry already exists in DB. QUERY: "$query
|
|---|
| 175 | #result3=`/usr/bin/mysql -u operator --host=fact01.fact.local --password=$password FactData -e "$query3"`
|
|---|
| 176 | result3=`sendquery`
|
|---|
| 177 |
|
|---|
| 178 | # only proceed with file
|
|---|
| 179 | # if information is not yet in database
|
|---|
| 180 | # and no update is wished ($doupdate)
|
|---|
| 181 | if [ "$result3" != "" ] && [ "$doupdate" == "no" ]
|
|---|
| 182 | then
|
|---|
| 183 | printprocesslog "INFO "$file" has been inserted already. -> continue "
|
|---|
| 184 | continue
|
|---|
| 185 | fi
|
|---|
| 186 |
|
|---|
| 187 | runtype=
|
|---|
| 188 | # check if fits file is corrupted
|
|---|
| 189 | numfitserrors=0
|
|---|
| 190 | #checkfitsfile=`fverify $rawfile 2>/dev/null | grep '0 error(s)'`
|
|---|
| 191 | numfitserrors=`fverify $rawfile 2>/dev/null | grep -o '[0-9][ ]error(s)' | grep -E -o '[0-9]'`
|
|---|
| 192 | #if [ "$checkfitsfile" == "" ]
|
|---|
| 193 | if [ $numfitserrors -gt 0 ]
|
|---|
| 194 | then
|
|---|
| 195 | printprocesslog "WARN "$rawfile" has "$numfitserrors" fitserror(s). "
|
|---|
| 196 | fitsdumperrors=`$factpath/fitsdump -h -t Events $file 2>&1 | grep corrupted`
|
|---|
| 197 | if [ "$fitsdumperrors" != "" ]
|
|---|
| 198 | then
|
|---|
| 199 | filecorrupt="yes"
|
|---|
| 200 | fi
|
|---|
| 201 | #numfitserrors=1
|
|---|
| 202 | fi
|
|---|
| 203 |
|
|---|
| 204 | numdrsfiles=
|
|---|
| 205 | step=
|
|---|
| 206 | #if [ $numfitserrors -eq 0 ]
|
|---|
| 207 | if [ "$filecorrupt" == "no" ]
|
|---|
| 208 | then
|
|---|
| 209 | # get run and file number from file
|
|---|
| 210 | runnumberfromfile=`$factpath/fitsdump -h -t Events $file 2>/dev/null | grep NIGHT | grep -E -o '20[1-9][0-9][01][0-9][0-3][0-9]'`
|
|---|
| 211 | filenumberfromfileorig=`$factpath/fitsdump -h -t Events $file 2>/dev/null | grep RUNID | grep -E -o '[0-9]{1,3}'`
|
|---|
| 212 | if [ "$runnumberfromfile" = "" ] || [ "$filenumberfromfileorig" = "" ]
|
|---|
| 213 | then
|
|---|
| 214 | printprocesslog "ERROR couldn't get run or file number from file name ("$file")."
|
|---|
| 215 | fi
|
|---|
| 216 | numberfromfile=$runnumberfromfile"_"`printf %03d $filenumberfromfileorig`
|
|---|
| 217 | # compare numbers
|
|---|
| 218 | if [ "$numberfromfile" != "$numberfromname" ]
|
|---|
| 219 | then
|
|---|
| 220 | numbererror="yes"
|
|---|
| 221 | printprocesslog "ERROR for file "$file": number from filename ("$numberfromname") and file ("$numberfromfile") don't agree."
|
|---|
| 222 | fi
|
|---|
| 223 |
|
|---|
| 224 | # get checksums from header
|
|---|
| 225 | checksum=`$factpath/fitsdump -h -t Events $file 2>/dev/null | grep CHECKSUM | grep -E -o '[a-zA-Z0-9]{16}'`
|
|---|
| 226 | if [ "$checksum" == "" ]
|
|---|
| 227 | then
|
|---|
| 228 | printprocesslog "WARN checksum for file "$file" is empty."
|
|---|
| 229 | fi
|
|---|
| 230 | datasum=`$factpath/fitsdump -h -t Events $file 2>/dev/null | grep DATASUM | grep -E -o '[0-9]{1,10}'`
|
|---|
| 231 | if [ "$datasum" == "" ]
|
|---|
| 232 | then
|
|---|
| 233 | printprocesslog "WARN datasum for file "$file" is empty."
|
|---|
| 234 | fi
|
|---|
| 235 |
|
|---|
| 236 | # check if this run has drs file
|
|---|
| 237 | # in case file is available, get STEP from header
|
|---|
| 238 | # in the very beginning only drs-files were existing
|
|---|
| 239 | # in the beginning the keywords DRSCALIB and STEP were not existing
|
|---|
| 240 | drsfile=`echo $file | sed -e 's/fits/drs.fits/'`
|
|---|
| 241 | numdrsfiles=`ls $drsfile 2>/dev/null | wc -l`
|
|---|
| 242 | drscalib=`$factpath/fitsdump -h -t Events $file 2>/dev/null | grep DRSCALIB | grep -E -o "['][TF][']" | sed -e "s/'//g"`
|
|---|
| 243 | if [ "$drscalib" == "T" ]
|
|---|
| 244 | then
|
|---|
| 245 | step=`$factpath/fitsdump -h -t Events $file 2>/dev/null | grep DRSSTEP | grep -E -o "['][012][']" | sed -e "s/'//g"`
|
|---|
| 246 | stepfromdrs=`$factpath/fitsdump -h -t Events $drsfile 2>/dev/null | grep STEP | grep -E -o "['][012][']" | sed -e "s/'//g"`
|
|---|
| 247 | if [ "$stepfromdrs" != "$step" ]
|
|---|
| 248 | then
|
|---|
| 249 | printprocesslog "ERROR for file "$file" step from drsfile ("$stepfromdrs") and from file ("$step") do not agree."
|
|---|
| 250 | if [ "$stepfromdrsfile" != "" ] && [ "$step" == "" ]
|
|---|
| 251 | then
|
|---|
| 252 | step=$stepfromdrsfile
|
|---|
| 253 | printprocesslog "WARN setting drsstep from drsfile ("$stepfromdrs") although value differs from the one in file "$file"."
|
|---|
| 254 | fi
|
|---|
| 255 | fi
|
|---|
| 256 | if ! [ $numdrsfiles -eq 1 ]
|
|---|
| 257 | then
|
|---|
| 258 | printprocesslog "ERROR for file "$file" number of drsfiles ("$numdrsfiles") and information from header ("$drscalib") don't agree."
|
|---|
| 259 | fi
|
|---|
| 260 | if [ "$step" = "" ]
|
|---|
| 261 | then
|
|---|
| 262 | printprocesslog "ERROR file "$file" has drsfiles ("$numdrsfiles"), but step ("$step") is empty."
|
|---|
| 263 | fi
|
|---|
| 264 | else
|
|---|
| 265 | if ! [ "$drscalib" == "F" ]
|
|---|
| 266 | then
|
|---|
| 267 | printprocesslog "WARN for file "$file" DRSCALIB is neither T nor F."
|
|---|
| 268 | fi
|
|---|
| 269 | fi
|
|---|
| 270 |
|
|---|
| 271 | # get other variables from header
|
|---|
| 272 | runtype=`$factpath/fitsdump -h -t Events $file 2>/dev/null | grep RUNTYPE | grep -E -o "['][a-z0-9._-]+[']" | sed -e "s/'//g" -e "s/_/-/g" -e "s/[.]//g"`
|
|---|
| 273 | #echo "runtype for file "$file": "$runtype
|
|---|
| 274 | roi=`$factpath/fitsdump -h -t Events $file 2>/dev/null | grep NROI | grep -v NROITM | grep -E -o '[0-9]{1,4}'`
|
|---|
| 275 | roitm=`$factpath/fitsdump -h -t Events $file 2>/dev/null | grep NROITM | grep -E -o '[0-9]{1,4}'`
|
|---|
| 276 | numevents=`$factpath/fitsdump -h -t Events $file 2>/dev/null | grep Events | grep -E -o '[0-9]+'`
|
|---|
| 277 | numphys=`$factpath/fitsdump -h -t Events $file 2>/dev/null | grep 'NTRG ' | grep -E -o '[0-9]+'`
|
|---|
| 278 | numext1=`$factpath/fitsdump -h -t Events $file 2>/dev/null | grep 'NTRGEXT1' | grep -E -o '[ ][0-9]+[ ]' | sed -e 's/\ //g'`
|
|---|
| 279 | numext2=`$factpath/fitsdump -h -t Events $file 2>/dev/null | grep 'NTRGEXT2' | grep -E -o '[ ][0-9]+[ ]' | sed -e 's/\ //g'`
|
|---|
| 280 | numelp=`$factpath/fitsdump -h -t Events $file 2>/dev/null | grep 'NTRGLPE' | grep -E -o '[0-9]+'`
|
|---|
| 281 | numilp=`$factpath/fitsdump -h -t Events $file 2>/dev/null | grep 'NTRGLPI' | grep -E -o '[0-9]+'`
|
|---|
| 282 | numoth=`$factpath/fitsdump -h -t Events $file 2>/dev/null | grep 'NTRGMISC' | grep -E -o '[0-9]+'`
|
|---|
| 283 | numped=`$factpath/fitsdump -h -t Events $file 2>/dev/null | grep 'NTRGPED' | grep -E -o '[0-9]+'`
|
|---|
| 284 | numtime=`$factpath/fitsdump -h -t Events $file 2>/dev/null | grep 'NTRGTIM' | grep -E -o '[0-9]+'`
|
|---|
| 285 | compiled=`$factpath/fitsdump -h -t Events $file 2>/dev/null | grep 'COMPILED' | grep -E -o "['][a-zA-Z]+[ ][ 12][0-9][ ]20[0-9][0-9][ ][0-2][0-9]:[0-5][0-9]:[0-5][0-9][']" | sed -e "s/'//g"`
|
|---|
| 286 | if ! [ "$compiled" == "" ]
|
|---|
| 287 | then
|
|---|
| 288 | compiletime=`date +'%F %H:%M:%S' --date="${compiled}" `
|
|---|
| 289 | else
|
|---|
| 290 | compiletime=
|
|---|
| 291 | fi
|
|---|
| 292 | revnum=`$factpath/fitsdump -h -t Events $file 2>/dev/null | grep 'REVISION' | grep -E -o "['][0-9]+[:]?[0-9]*[MSP]*[']" | sed -e "s/'//g"`
|
|---|
| 293 | # in newest data start time is in DATE-OBS
|
|---|
| 294 | # in older data start time is in TSTART
|
|---|
| 295 | # in the beginning TSTART was empty
|
|---|
| 296 | runstart=`$factpath/fitsdump -h -t Events $file 2>/dev/null | grep DATE-OBS | grep -E -o '20[1-9][0-9][\-][01][0-9][\-][0-3][0-9]T[0-2][0-9]:[0-6][0-9]:[0-6][0-9][.][0-9]{6}'`
|
|---|
| 297 | runstart2=`$factpath/fitsdump -h -t Events $file 2>/dev/null | grep TSTART | grep -E -o '20[1-9][0-9][\-][01][0-9][\-][0-3][0-9]T[0-2][0-9]:[0-6][0-9]:[0-6][0-9][.][0-9]{6}'`
|
|---|
| 298 | if [ "$runstart" == "" ]
|
|---|
| 299 | then
|
|---|
| 300 | if [ "$runstart2" == "" ]
|
|---|
| 301 | then
|
|---|
| 302 | runstart=`$factpath/fitsdump -h -t Events $file 2>/dev/null | grep DATE | grep -v 'DATE-' | grep -E -o '20[1-9][0-9][\-][01][0-9][\-][0-3][0-9]T[0-2][0-9]:[0-6][0-9]:[0-6][0-9][.][0-9]{6}'`
|
|---|
| 303 | else
|
|---|
| 304 | runstart=$runstart2
|
|---|
| 305 | fi
|
|---|
| 306 | fi
|
|---|
| 307 | # in newest data start time is in DATE-END
|
|---|
| 308 | # in older data start time is in TSTOP
|
|---|
| 309 | # in the beginning TSTOP was empty
|
|---|
| 310 | runstop=`$factpath/fitsdump -h -t Events $file 2>/dev/null | grep DATE-END | grep -E -o '20[1-9][0-9][\-][01][0-9][\-][0-3][0-9]T[0-2][0-9]:[0-6][0-9]:[0-6][0-9][.][0-9]{6}'`
|
|---|
| 311 | runstop2=`$factpath/fitsdump -h -t Events $file 2>/dev/null | grep TSTOP | grep -E -o '20[1-9][0-9][\-][01][0-9][\-][0-3][0-9]T[0-2][0-9]:[0-6][0-9]:[0-6][0-9][.][0-9]{6}'`
|
|---|
| 312 | if [ "$runstop" == "" ]
|
|---|
| 313 | then
|
|---|
| 314 | if [ "$runstop2" == "" ]
|
|---|
| 315 | then
|
|---|
| 316 | runstop=`stat $file 2>/dev/null | grep Modify | grep -E -o '20[1-9][0-9][\-][01][0-9][\-][0-3][0-9][ ][0-2][0-9]:[0-6][0-9]:[0-6][0-9][.][0-9]{9}'`
|
|---|
| 317 | else
|
|---|
| 318 | runstop=$runstop2
|
|---|
| 319 | fi
|
|---|
| 320 | fi
|
|---|
| 321 | fi
|
|---|
| 322 |
|
|---|
| 323 | # set runtype to 'unknown', if no runtype could be retrieved from file
|
|---|
| 324 | if [ "$runtype" == "" ]
|
|---|
| 325 | then
|
|---|
| 326 | runtype="n/a"
|
|---|
| 327 | fi
|
|---|
| 328 | # on 15.11.2011 the runtypes had different names
|
|---|
| 329 | if [ "$date" == "2011/11/15" ]
|
|---|
| 330 | then
|
|---|
| 331 | if [ "$runtype" == "drs-calib" ]
|
|---|
| 332 | then
|
|---|
| 333 | runtype="drs-gain"
|
|---|
| 334 | fi
|
|---|
| 335 | if [ "$runtype" == "drs-time-calib" ]
|
|---|
| 336 | then
|
|---|
| 337 | runtype="drs-time"
|
|---|
| 338 | fi
|
|---|
| 339 | if [ "$runtype" == "pedestal" ]
|
|---|
| 340 | then
|
|---|
| 341 | runtype="drs-pedestal"
|
|---|
| 342 | fi
|
|---|
| 343 | if [ "$runtype" == "light-pulser" ]
|
|---|
| 344 | then
|
|---|
| 345 | runtype="light-pulser-ext"
|
|---|
| 346 | fi
|
|---|
| 347 | if [ "$runtype" == "pedestal-on" ]
|
|---|
| 348 | then
|
|---|
| 349 | runtype="pedestal"
|
|---|
| 350 | fi
|
|---|
| 351 | fi
|
|---|
| 352 | # get runtype
|
|---|
| 353 | query="SELECT fRunTypeKEY FROM RunType WHERE fRunTypeName='"$runtype"'"
|
|---|
| 354 | printprocesslog "DEBUG get run type from DB. QUERY:"$query
|
|---|
| 355 | #result2=( `/usr/bin/mysql -u operator --host=fact01.fact.local --password=$password FactData -e "$query2"` )
|
|---|
| 356 | result2=( `sendquery` )
|
|---|
| 357 | if [ ${#result2} -eq 0 ]
|
|---|
| 358 | then
|
|---|
| 359 | printprocesslog "ERROR "$numberfromname": Could not query fRunTypeKey for runtype "$runtype" ."
|
|---|
| 360 | continue
|
|---|
| 361 | fi
|
|---|
| 362 |
|
|---|
| 363 | # check if entry has already checksums
|
|---|
| 364 | query="SELECT fNight FROM RunInfo WHERE Concat(fNight, '_', LPAD(fRunID, 3, 0))='"$numberfromname"'"
|
|---|
| 365 | query=$query" AND NOT ISNULL(fMd5sumRaw) AND NOT ISNULL(fMd5sumRawZip)"
|
|---|
| 366 | printprocesslog "DEBUG check if md5sums are alreay in DB. QUERY:"$query
|
|---|
| 367 | #result5=`/usr/bin/mysql -u operator --host=fact01.fact.local --password=$password FactData -e "$query5"`
|
|---|
| 368 | result5=`sendquery`
|
|---|
| 369 |
|
|---|
| 370 | # get md5sums of raw and zip file
|
|---|
| 371 | # to safe time for tests and update this can be skipped ($skipmd5sum)
|
|---|
| 372 | md5sum=
|
|---|
| 373 | md5sumzip=
|
|---|
| 374 | if [ "$skipmd5sum" == "no" ] || [ "$skipmd5sum" == "iffilled" ]
|
|---|
| 375 | then
|
|---|
| 376 | #echo "skip: "$skipmd5sum >> $logfile 2>&1
|
|---|
| 377 | #echo "res5: -"$result5"-" >> $logfile 2>&1
|
|---|
| 378 | #if [ "$skipmd5sum" == "no" ] || [ "$result5$skipmd5sum" == "iffilled" ]
|
|---|
| 379 | if [ "$skipmd5sum" == "no" ] || [ "$result5" == "" ]
|
|---|
| 380 | then
|
|---|
| 381 | #zipfile=`echo $file | sed -e 's/raw/zipraw/' -e 's/fits/fits.gz/'`
|
|---|
| 382 | # only do the md5sum if the zipfile is already available
|
|---|
| 383 | if ls $file >/dev/null 2>&1
|
|---|
| 384 | then
|
|---|
| 385 | printprocesslog "INFO calculation md5sum for rawfile "$rawfile
|
|---|
| 386 | md5sum=`md5sum $rawfile | cut -d' ' -f1`
|
|---|
| 387 | printprocesslog "INFO calculation md5sum for zipfile "$file
|
|---|
| 388 | md5sumzip=`md5sum $file | cut -d' ' -f1`
|
|---|
| 389 | fi
|
|---|
| 390 | fi
|
|---|
| 391 | fi
|
|---|
| 392 |
|
|---|
| 393 | # insert or update depending on whether run exists
|
|---|
| 394 | if [ "$result3" == "" ]
|
|---|
| 395 | then
|
|---|
| 396 | query="INSERT"
|
|---|
| 397 | querymid=" fNight="$runnumber", fRunID="$filenumberfromname", "
|
|---|
| 398 | querystop=
|
|---|
| 399 | else
|
|---|
| 400 | query="UPDATE"
|
|---|
| 401 | querymid=
|
|---|
| 402 | querystop=" WHERE fNight="$runnumber" AND fRunID="$filenumberfromname
|
|---|
| 403 | fi
|
|---|
| 404 | query=$query" RunInfo SET "$querymid" fRunTypeKey="${result2[0]}
|
|---|
| 405 | #if [ $numfitserrors -eq 0 ]
|
|---|
| 406 | if [ "$filecorrupt" == "no" ]
|
|---|
| 407 | then
|
|---|
| 408 | query=$query", fRunStart='"$runstart"', fRunStop='"$runstop"'"
|
|---|
| 409 | if [ "$numevents" != "" ]
|
|---|
| 410 | then
|
|---|
| 411 | query=$query", fNumEvents="$numevents
|
|---|
| 412 | fi
|
|---|
| 413 | if [ "$roi" != "" ]
|
|---|
| 414 | then
|
|---|
| 415 | query=$query", fROI="$roi
|
|---|
| 416 | fi
|
|---|
| 417 | if [ "$roitm" != "" ]
|
|---|
| 418 | then
|
|---|
| 419 | query=$query", fROITimeMarker="$roitm
|
|---|
| 420 | fi
|
|---|
| 421 | if [ "$numphys" != "" ]
|
|---|
| 422 | then
|
|---|
| 423 | query=$query", fNumPhysicsTrigger="$numphys
|
|---|
| 424 | fi
|
|---|
| 425 | if [ "$numext1" != "" ]
|
|---|
| 426 | then
|
|---|
| 427 | query=$query", fNumExt1Trigger="$numext1
|
|---|
| 428 | fi
|
|---|
| 429 | if [ "$numext2" != "" ]
|
|---|
| 430 | then
|
|---|
| 431 | query=$query", fNumExt2Trigger="$numext2
|
|---|
| 432 | fi
|
|---|
| 433 | if [ "$numelp" != "" ]
|
|---|
| 434 | then
|
|---|
| 435 | query=$query", fNumELPTrigger="$numelp
|
|---|
| 436 | fi
|
|---|
| 437 | if [ "$numilp" != "" ]
|
|---|
| 438 | then
|
|---|
| 439 | query=$query", fNumILPTrigger="$numilp
|
|---|
| 440 | fi
|
|---|
| 441 | if [ "$numped" != "" ]
|
|---|
| 442 | then
|
|---|
| 443 | query=$query", fNumPedestalTrigger="$numped
|
|---|
| 444 | fi
|
|---|
| 445 | if [ "$numtime" != "" ]
|
|---|
| 446 | then
|
|---|
| 447 | query=$query", fNumTimeTrigger="$numtime
|
|---|
| 448 | fi
|
|---|
| 449 | if [ "$numoth" != "" ]
|
|---|
| 450 | then
|
|---|
| 451 | query=$query", fNumOtherTrigger="$numoth
|
|---|
| 452 | fi
|
|---|
| 453 | fi
|
|---|
| 454 | if [ "$checksum" != "" ]
|
|---|
| 455 | then
|
|---|
| 456 | query=$query", fCheckSum='"$checksum"'"
|
|---|
| 457 | fi
|
|---|
| 458 | if [ "$datasum" != "" ]
|
|---|
| 459 | then
|
|---|
| 460 | query=$query", fDataSum='"$datasum"'"
|
|---|
| 461 | fi
|
|---|
| 462 | if [ "$md5sum" != "" ]
|
|---|
| 463 | then
|
|---|
| 464 | query=$query", fMd5sumRaw='"$md5sum"', fMd5sumRawZip='"$md5sumzip"'"
|
|---|
| 465 | fi
|
|---|
| 466 | if [ "$numdrsfiles" != "" ]
|
|---|
| 467 | then
|
|---|
| 468 | query=$query", fHasDrsFile="$numdrsfiles
|
|---|
| 469 | fi
|
|---|
| 470 | if [ "$step" != "" ]
|
|---|
| 471 | then
|
|---|
| 472 | query=$query", fDrsStep="$step
|
|---|
| 473 | fi
|
|---|
| 474 | if [ "$compiletime" != "" ]
|
|---|
| 475 | then
|
|---|
| 476 | query=$query", fCompileTime='"$compiletime"'"
|
|---|
| 477 | fi
|
|---|
| 478 | if [ "$revnum" != "" ]
|
|---|
| 479 | then
|
|---|
| 480 | query=$query", fRevisionNumber='"$revnum"'"
|
|---|
| 481 | fi
|
|---|
| 482 | query=$query", fFitsFileErrors="$numfitserrors
|
|---|
| 483 | query=$query" "$querystop
|
|---|
| 484 | # send query to DB
|
|---|
| 485 | #echo $query
|
|---|
| 486 | sendquery >/dev/null
|
|---|
| 487 | done
|
|---|
| 488 | done
|
|---|
| 489 |
|
|---|
| 490 | finish
|
|---|
| 491 |
|
|---|
