| 1 | #!/bin/bash
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| 2 |
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| 3 | # this script has been written to run on La Palma on the machine data
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| 4 | # i.e. paths are only working on this machine
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| 5 | # the script starts from the zipped files
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| 6 | # this causes a delay until files are in the database
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| 7 | # because they have to be rsynced and zipped first (see RsyncRawData.sh, ZipRawData.sh)
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| 8 | #
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| 9 | # starting from 2012/06/05 the keywords CHECKSUM and DATASUM are
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| 10 | # available in the fits header of the rawfile
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| 11 | # starting from this time the md5sums are not calculated anymore (not true, only from 2012/12/17)
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| 12 | #
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| 13 |
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| 14 | # todo
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| 15 | # tempfile for fitsdump -h output
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| 16 |
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| 17 | ## options:
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| 18 | #skipmd5sum="no" # fill md5 sums in any case
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| 19 | #skipmd5sum="iffilled" # fill md5 sum only if they are not yet in db # default
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| 20 | #skipmd5sum="yes" # do not fill md5 sums in any case #new default since 2012/06/05 when the checksum is available in heaser
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| 21 |
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| 22 | # option whether to fill all row or only those where information is missing
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| 23 | # $doupdate might be given as environment variable
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| 24 | if [ "$doupdate" = "" ]
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| 25 | then
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| 26 | doupdate="yes" # update all entries (needed when new fields have been added)
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| 27 | doupdate="no" # fill only entries which are not yet existing (default)
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| 28 | fi
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| 29 |
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| 30 |
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| 31 | root=/opt/root_svn/bin/thisroot.sh
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| 32 |
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| 33 | source `dirname $0`/../Sourcefile.sh
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| 34 | printprocesslog "INFO starting $0 with options doupdate="$doupdate #" and skipmd5sum="$skipmd5sum
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| 35 |
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| 36 | # setup to use ftools
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| 37 | source $HEADAS/headas-init.sh
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| 38 |
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| 39 | # check if software is available
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| 40 | if ! ls $factpath/fitsdump >/dev/null 2>&1
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| 41 | then
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| 42 | printprocesslog "ERROR "$factpath"/fitsdump is not available."
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| 43 | finish
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| 44 | fi
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| 45 |
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| 46 | # check if paths are available
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| 47 | if ! ls /daq/raw >/dev/null 2>&1
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| 48 | then
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| 49 | printprocesslog "ERROR /daq/raw is not available."
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| 50 | finish
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| 51 | fi
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| 52 | if ! ls /newdaq/raw >/dev/null 2>&1
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| 53 | then
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| 54 | printprocesslog "ERROR /newdaq/raw is not available."
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| 55 | finish
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| 56 | fi
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| 57 | if ! ls /loc_data/zipraw >/dev/null 2>&1
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| 58 | then
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| 59 | printprocesslog "ERROR /loc_data/zipraw is not available."
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| 60 | finish
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| 61 | fi
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| 62 |
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| 63 | # get dates
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| 64 | if [ "$certaindate" != "" ]
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| 65 | then
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| 66 | getdates $certaindate
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| 67 | else
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| 68 | # get all night
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| 69 | #getdates "all"
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| 70 | # get last 6 nights if hour between 7 and 19h, else only current night
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| 71 | getdates 6 7 19
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| 72 | fi
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| 73 |
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| 74 | # do check for rawfiles of these dates
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| 75 | for date in ${dates[@]}
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| 76 | do
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| 77 | date2=`echo $date | sed -e 's/\///g'`
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| 78 | night=
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| 79 | query="SELECT fNight FROM AuxFilesAvailISDCStatus WHERE fNight="$date2
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| 80 | night=`sendquery`
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| 81 | if [ "$night" == "" ] && ls /loc_data/zipraw/$date >/dev/null 2>&1
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| 82 | then
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| 83 | printprocesslog "INFO insert "$date2" to AuxFilesAvailISDCStatus"
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| 84 | query="INSERT AuxFilesAvailISDCStatus SET fNight="$date2", fPriority="$date2
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| 85 | sendquery >/dev/null 2>&1
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| 86 | fi
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| 87 | night=
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| 88 | query="SELECT fNight FROM DriveFileAvailISDCStatus WHERE fNight="$date2
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| 89 | night=`sendquery`
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| 90 | if [ "$night" == "" ] && ls /loc_data/zipraw/$date >/dev/null 2>&1
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| 91 | then
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| 92 | printprocesslog "INFO insert "$date2" to DriveFileAvailISDCStatus"
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| 93 | query="INSERT DriveFileAvailISDCStatus SET fNight="$date2", fPriority="$date2
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| 94 | sendquery >/dev/null 2>&1
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| 95 | fi
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| 96 | night=
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| 97 | query="SELECT fNight FROM RatesFileAvailISDCStatus WHERE fNight="$date2
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| 98 | night=`sendquery`
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| 99 | if [ "$night" == "" ] && ls /loc_data/zipraw/$date >/dev/null 2>&1
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| 100 | then
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| 101 | printprocesslog "INFO insert "$date2" to RatesFileAvailISDCStatus"
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| 102 | query="INSERT RatesFileAvailISDCStatus SET fNight="$date2", fPriority="$date2
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| 103 | sendquery >/dev/null 2>&1
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| 104 | fi
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| 105 | night=
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| 106 | query="SELECT fNight FROM AuxDataInsertStatus WHERE fNight="$date2
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| 107 | night=`sendquery`
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| 108 | if [ "$night" == "" ] && ls /loc_data/zipraw/$date >/dev/null 2>&1
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| 109 | then
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| 110 | printprocesslog "INFO insert "$date2" to AuxDataInsertStatus"
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| 111 | query="INSERT AuxDataInsertStatus SET fNight="$date2", fPriority="$date2
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| 112 | sendquery >/dev/null 2>&1
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| 113 | fi
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| 114 | ziprawdir=/loc_data/zipraw/$date
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| 115 | # check if data are available from that night
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| 116 | if ! [ -d $ziprawdir ]
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| 117 | then
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| 118 | printprocesslog "INFO "$ziprawdir" does not exist."
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| 119 | continue
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| 120 | else
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| 121 | printprocesslog "INFO processing "$ziprawdir"..."
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| 122 | fi
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| 123 |
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| 124 | # find all fits.gz files starting with the oldest file
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| 125 | printprocesslog "INFO finding files to be checked in $ziprawdir..."
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| 126 | fitsgzfiles=`find $ziprawdir -type f -name '*.fits.gz'| sort `
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| 127 |
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| 128 | # get runnumber from date
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| 129 | runnumber=`echo $date | sed -e 's/\///g'`
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| 130 |
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| 131 | # loop to check files
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| 132 | for file in $fitsgzfiles
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| 133 | do
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| 134 | filecorrupt="no"
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| 135 | printprocesslog "INFO checking file "$file
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| 136 | #echo "INFO checking file "$file" at "`date`
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| 137 |
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| 138 | # raw and original file
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| 139 | # file: /loc_data/zipraw
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| 140 | # rawfile: /daq/raw
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| 141 | # origfile: /newdaq/raw
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| 142 | rawfile=`echo $file | sed -e 's/loc_data/daq/' -e 's/zipraw/raw/' -e 's/fits[.]gz/fits/'`
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| 143 | rawfile2=`echo $file | sed -e 's/zipraw/raw/' -e 's/fits[.]gz/fits/'`
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| 144 | origfile=`echo $rawfile | sed -e 's/daq/newdaq/'`
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| 145 |
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| 146 | # check if it is drs file
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| 147 | isdrs=`ls $file | grep drs`
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| 148 | if [ "$isdrs" != "" ]
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| 149 | then
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| 150 | printprocesslog "INFO "$file" is a drs file. -> continue"
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| 151 | continue
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| 152 | fi
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| 153 |
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| 154 | # not needed anymore as files are only rsynced from newdaq to daq when they are closed
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| 155 | # # check if file is already finished
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| 156 | # # original file on daq (if data was taken on daq
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| 157 | # if [ -e $origfile ]
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| 158 | # then
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| 159 | # # check if raw file was changed in the last 30 minutes
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| 160 | # isnew=`find $origfile -cmin -30`
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| 161 | # if [ "$isnew" != "" ]
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| 162 | # then
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| 163 | # printprocesslog "WARN "$origfile" is not older than 30 min. -> continue"
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| 164 | # continue
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| 165 | # fi
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| 166 | #
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| 167 | # # get time of last modification as seconds since Epoch for both files
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| 168 | # timeorig=`stat -c %Y $origfile`
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| 169 | # timecopy=`stat -c %Y $rawfile`
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| 170 | # # compare times
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| 171 | # if ! [ $timeorig -eq $timecopy ]
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| 172 | # then
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| 173 | # # if times are not the same, the file is still open => no check
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| 174 | # printprocesslog "INFO file "$rawfile" not yet closed. -> continue"
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| 175 | # continue
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| 176 | # fi
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| 177 | # else
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| 178 | # # if the origfile doesn't exist, the data was probably written not on daq but on data
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| 179 | # printprocesslog "INFO file "$rawfile" was probably taken on data and not daq."
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| 180 | # fi
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| 181 |
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| 182 | # get run and file number form filename
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| 183 | runnumbererror="no"
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| 184 | numbererror="no"
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| 185 | numberfromname=`echo $file | grep -E -o '20[1-9][0-9][01][0-9][0-3][0-9]_[0-9]{3}'`
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| 186 | runnumberfromname=`echo $numberfromname | cut -d_ -f1`
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| 187 | filenumberfromname=`echo $numberfromname | cut -d_ -f2 | sed -e 's/^0//g' -e 's/^0//g'`
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| 188 | if [ "$runnumber" != "$runnumberfromname" ]
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| 189 | then
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| 190 | runnumbererror="yes"
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| 191 | printprocesslog "ERROR for file "$file": runnumber from date ("$runnumber") and filename ("$runnumberfromname") don't agree."
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| 192 | fi
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| 193 |
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| 194 | # check if entry already exists
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| 195 | query="SELECT fNight FROM RunInfo WHERE Concat(fNight, '_', LPAD(fRunID, 3, 0))='"$numberfromname"'"
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| 196 | printprocesslog "DEBUG check if entry already exists in DB. QUERY: "$query
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| 197 | #result3=`/usr/bin/mysql -u operator --host=fact01.fact.local --password=$password FactData -e "$query3"`
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| 198 | result3=`sendquery`
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| 199 |
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| 200 | # only proceed with file
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| 201 | # if information is not yet in database
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| 202 | # and no update is wished ($doupdate)
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| 203 | if [ "$result3" != "" ] && [ "$doupdate" == "no" ]
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| 204 | then
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| 205 | printprocesslog "INFO "$file" has been inserted already. -> continue "
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| 206 | continue
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| 207 | fi
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| 208 |
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| 209 | runtype=
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| 210 | # check if fits file is corrupted
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| 211 | numfitserrors=0
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| 212 | #checkfitsfile=`fverify $rawfile 2>/dev/null | grep '0 error(s)'`
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| 213 | #numfitserrors=`fverify $rawfile 2>/dev/null | grep -o '[0-9][ ]error(s)' | grep -E -o '[0-9]'`
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| 214 | # ftools missing on daq
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| 215 | # numfitserrors=`ssh daq "export HEADAS=/opt/heasoft-6.11/x86_64-unknown-linux-gnu-libc2.13-0/ ; source $HEADAS/headas-init.sh ; fverify $rawfile2 2>/dev/null | grep -o '[0-9][ ]error(s)' | grep -E -o '[0-9]'"`
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| 216 | # echo $rawfile2" ------ "$numfitserrors
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| 217 | #if [ "$checkfitsfile" == "" ]
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| 218 | if [ $numfitserrors -gt 0 ]
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| 219 | then
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| 220 | printprocesslog "WARN "$rawfile2" has "$numfitserrors" fitserror(s). "
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| 221 | #fitsdumperrors=`$factpath/fitsdump -h -t Events $file 2>&1 | grep corrupted`
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| 222 | fitsdumperrors=`$factpath/fitsdump -h $file 2>&1 | grep corrupted`
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| 223 | if [ "$fitsdumperrors" != "" ]
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| 224 | then
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| 225 | filecorrupt="yes"
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| 226 | fi
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| 227 | #numfitserrors=1
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| 228 | fi
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| 229 |
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| 230 | # check if file was closed properly
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| 231 | if [ "`echo $file | grep -o drs`" == "drs" ]
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| 232 | then
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| 233 | nondrsfile=`echo $file | sed -e 's/[.]drs//g'`
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| 234 | tstop=`ssh newdaq "source $root ; $factpath/fitsdump -h $nondrsfile 2>/dev/null | grep TSTOPI | grep -E -o '[0-9]+'"`
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| 235 | else
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| 236 | tstop=`ssh newdaq "source $root ; $factpath/fitsdump -h $file 2>/dev/null | grep TSTOPI | grep -E -o '[0-9]+'"`
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| 237 | fi
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| 238 | if [ "$tstop" == "0" ]
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| 239 | then
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| 240 | echo $file" not yet closed."
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| 241 | echo "WARN: $file has empty TSTOP"
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| 242 | filecorrupt="yes"
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| 243 | fi
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| 244 |
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| 245 | numdrsfiles=
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| 246 | step=
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| 247 | #if [ $numfitserrors -eq 0 ]
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| 248 | if [ "$filecorrupt" == "no" ]
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| 249 | then
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| 250 | # get run and file number from file
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| 251 | #runnumberfromfile=`$factpath/fitsdump -h -t Events $file 2>/dev/null | grep NIGHT | grep -E -o '20[1-9][0-9][01][0-9][0-3][0-9]'`
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| 252 | runnumberfromfile=`$factpath/fitsdump -h $file 2>/dev/null | grep NIGHT | grep -E -o '20[1-9][0-9][01][0-9][0-3][0-9]'`
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| 253 | #filenumberfromfileorig=`$factpath/fitsdump -h -t Events $file 2>/dev/null | grep RUNID | grep -E -o '[0-9]{1,3}'`
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| 254 | filenumberfromfileorig=`$factpath/fitsdump -h $file 2>/dev/null | grep RUNID | grep -E -o '[0-9]{1,3}'`
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| 255 | if [ "$runnumberfromfile" = "" ] || [ "$filenumberfromfileorig" = "" ]
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| 256 | then
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| 257 | printprocesslog "ERROR couldn't get run or file number from file name ("$file")."
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| 258 | fi
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| 259 | numberfromfile=$runnumberfromfile"_"`printf %03d $filenumberfromfileorig`
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| 260 | # compare numbers
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| 261 | if [ "$numberfromfile" != "$numberfromname" ]
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| 262 | then
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| 263 | numbererror="yes"
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| 264 | printprocesslog "ERROR for file "$file": number from filename ("$numberfromname") and file ("$numberfromfile") don't agree."
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| 265 | fi
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| 266 |
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| 267 | # get checksums from header
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| 268 | #checksum=`$factpath/fitsdump -h -t Events $file 2>/dev/null | grep CHECKSUM | grep -E -o '[a-zA-Z0-9]{16}'`
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| 269 | checksum=`$factpath/fitsdump -h $file 2>/dev/null | grep CHECKSUM | grep -E -o '[a-zA-Z0-9]{16}'`
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| 270 | if [ "$checksum" == "" ]
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| 271 | then
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| 272 | printprocesslog "WARN checksum for file "$file" is empty."
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| 273 | fi
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| 274 | #datasum=`$factpath/fitsdump -h -t Events $file 2>/dev/null | grep DATASUM | grep -E -o '[0-9]{1,10}'`
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| 275 | datasum=`$factpath/fitsdump -h $file 2>/dev/null | grep DATASUM | grep -E -o '[0-9]{1,10}'`
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| 276 | if [ "$datasum" == "" ]
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| 277 | then
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| 278 | printprocesslog "WARN datasum for file "$file" is empty."
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| 279 | fi
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| 280 |
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| 281 | # check if this run has drs file
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| 282 | # in case file is available, get STEP from header
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| 283 | # in the very beginning only drs-files were existing
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| 284 | # in the beginning the keywords DRSCALIB and STEP were not existing
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| 285 | drsfile=`echo $file | sed -e 's/fits/drs.fits/'`
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| 286 | numdrsfiles=`ls $drsfile 2>/dev/null | wc -l`
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| 287 | #drscalib=`$factpath/fitsdump -h -t Events $file 2>/dev/null | grep DRSCALIB | grep -E -o "['][TF][']" | sed -e "s/'//g"`
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| 288 | drscalib=`$factpath/fitsdump -h $file 2>/dev/null | grep DRSCALIB | grep -E -o "[\ ][TF][\ ]" | sed -e "s/\ //g"`
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| 289 | if [ "$drscalib" == "T" ]
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| 290 | then
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| 291 | #step=`$factpath/fitsdump -h -t Events $file 2>/dev/null | grep DRSSTEP | grep -E -o "['][012][']" | sed -e "s/'//g"`
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| 292 | step=`$factpath/fitsdump -h $file 2>/dev/null | grep DRSSTEP | grep -E -o "[\ ][012][\ ]" | sed -e "s/\ //g"`
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| 293 | #stepfromdrs=`$factpath/fitsdump -h -t Events $drsfile 2>/dev/null | grep STEP | grep -E -o "['][012][']" | sed -e "s/'//g"`
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| 294 | stepfromdrs=`$factpath/fitsdump -h $drsfile 2>/dev/null | grep STEP | grep -E -o "[\ ][012][\ ]?" | sed -e "s/\ //g"`
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| 295 | if [ "$stepfromdrs" != "$step" ]
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| 296 | then
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| 297 | printprocesslog "ERROR for file "$file" step from drsfile ("$stepfromdrs") and from file ("$step") do not agree."
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| 298 | if [ "$stepfromdrsfile" != "" ] && [ "$step" == "" ]
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| 299 | then
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| 300 | step=$stepfromdrsfile
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| 301 | printprocesslog "WARN setting drsstep from drsfile ("$stepfromdrs") although value differs from the one in file "$file"."
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| 302 | fi
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| 303 | fi
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| 304 | if ! [ $numdrsfiles -eq 1 ]
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| 305 | then
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| 306 | printprocesslog "ERROR for file "$file" number of drsfiles ("$numdrsfiles") and information from header ("$drscalib") don't agree."
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| 307 | fi
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| 308 | if [ "$step" = "" ]
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| 309 | then
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| 310 | printprocesslog "ERROR file "$file" has drsfiles ("$numdrsfiles"), but step ("$step") is empty."
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| 311 | fi
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| 312 | else
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| 313 | if ! [ "$drscalib" == "F" ]
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| 314 | then
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| 315 | printprocesslog "WARN for file "$file" DRSCALIB is neither T nor F."
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| 316 | fi
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| 317 | fi
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| 318 | #echo $numdrsfiles" "$stepfromdrs" "$step" "$drscalib" ("$file")"
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| 319 |
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| 320 | # get other variables from header
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| 321 | #runtype=`$factpath/fitsdump -h -t Events $file 2>/dev/null | grep RUNTYPE | grep -E -o "['][a-z0-9._-]+[']" | sed -e "s/'//g" -e "s/_/-/g" -e "s/[.]//g"`
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| 322 | runtype=`$factpath/fitsdump -h $file 2>/dev/null | grep RUNTYPE | grep -E -o "['][a-z0-9._-]+[']" | sed -e "s/'//g" -e "s/_/-/g" -e "s/[.]//g"`
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| 323 | #echo "runtype for file "$file": "$runtype
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| 324 | #roi=`$factpath/fitsdump -h -t Events $file 2>/dev/null | grep NROI | grep -v NROITM | grep -E -o '[0-9]{1,4}'`
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| 325 | roi=`$factpath/fitsdump -h $file 2>/dev/null | grep NROI | grep -v NROITM | grep -E -o '[0-9]{1,4}'`
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| 326 | #roitm=`$factpath/fitsdump -h -t Events $file 2>/dev/null | grep NROITM | grep -E -o '[0-9]{1,4}'`
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| 327 | roitm=`$factpath/fitsdump -h $file 2>/dev/null | grep NROITM | grep -E -o '[0-9]{1,4}'`
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| 328 | #numevents=`$factpath/fitsdump -h -t Events $file 2>/dev/null | grep Events | grep -E -o '[0-9]+'`
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| 329 | numevents=`$factpath/fitsdump -h $file 2>/dev/null | grep Events | grep -E -o '[0-9]+'`
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| 330 | #numphys=`$factpath/fitsdump -h -t Events $file 2>/dev/null | grep 'NTRG ' | grep -E -o '[0-9]+'`
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| 331 | numphys=`$factpath/fitsdump -h $file 2>/dev/null | grep 'NTRG ' | grep -E -o '[0-9]+'`
|
|---|
| 332 | #numext1=`$factpath/fitsdump -h -t Events $file 2>/dev/null | grep 'NTRGEXT1' | grep -E -o '[ ][0-9]+[ ]' | sed -e 's/\ //g'`
|
|---|
| 333 | numext1=`$factpath/fitsdump -h $file 2>/dev/null | grep 'NTRGEXT1' | grep -E -o '[ ][0-9]+[ ]' | sed -e 's/\ //g'`
|
|---|
| 334 | #numext2=`$factpath/fitsdump -h -t Events $file 2>/dev/null | grep 'NTRGEXT2' | grep -E -o '[ ][0-9]+[ ]' | sed -e 's/\ //g'`
|
|---|
| 335 | numext2=`$factpath/fitsdump -h $file 2>/dev/null | grep 'NTRGEXT2' | grep -E -o '[ ][0-9]+[ ]' | sed -e 's/\ //g'`
|
|---|
| 336 | #numelp=`$factpath/fitsdump -h -t Events $file 2>/dev/null | grep 'NTRGLPE' | grep -E -o '[0-9]+'`
|
|---|
| 337 | numelp=`$factpath/fitsdump -h $file 2>/dev/null | grep 'NTRGLPE' | grep -E -o '[0-9]+'`
|
|---|
| 338 | #numilp=`$factpath/fitsdump -h -t Events $file 2>/dev/null | grep 'NTRGLPI' | grep -E -o '[0-9]+'`
|
|---|
| 339 | numilp=`$factpath/fitsdump -h $file 2>/dev/null | grep 'NTRGLPI' | grep -E -o '[0-9]+'`
|
|---|
| 340 | #numoth=`$factpath/fitsdump -h -t Events $file 2>/dev/null | grep 'NTRGMISC' | grep -E -o '[0-9]+'`
|
|---|
| 341 | numoth=`$factpath/fitsdump -h $file 2>/dev/null | grep 'NTRGMISC' | grep -E -o '[0-9]+'`
|
|---|
| 342 | #numped=`$factpath/fitsdump -h -t Events $file 2>/dev/null | grep 'NTRGPED' | grep -E -o '[0-9]+'`
|
|---|
| 343 | numped=`$factpath/fitsdump -h $file 2>/dev/null | grep 'NTRGPED' | grep -E -o '[0-9]+'`
|
|---|
| 344 | #numtime=`$factpath/fitsdump -h -t Events $file 2>/dev/null | grep 'NTRGTIM' | grep -E -o '[0-9]+'`
|
|---|
| 345 | numtime=`$factpath/fitsdump -h $file 2>/dev/null | grep 'NTRGTIM' | grep -E -o '[0-9]+'`
|
|---|
| 346 | #compiled=`$factpath/fitsdump -h -t Events $file 2>/dev/null | grep 'COMPILED' | grep -E -o "['][a-zA-Z]+[ ][ 12][0-9][ ]20[0-9][0-9][ ][0-2][0-9]:[0-5][0-9]:[0-5][0-9][']" | sed -e "s/'//g"`
|
|---|
| 347 | compiled=`$factpath/fitsdump -h $file 2>/dev/null | grep 'COMPILED' | grep -E -o "['][a-zA-Z]+[ ][ 12][0-9][ ]20[0-9][0-9][ ][0-2][0-9]:[0-5][0-9]:[0-5][0-9][']" | sed -e "s/'//g"`
|
|---|
| 348 | if ! [ "$compiled" == "" ]
|
|---|
| 349 | then
|
|---|
| 350 | compiletime=`date +'%F %H:%M:%S' --date="${compiled}" `
|
|---|
| 351 | else
|
|---|
| 352 | compiletime=
|
|---|
| 353 | fi
|
|---|
| 354 | #revnum=`$factpath/fitsdump -h -t Events $file 2>/dev/null | grep 'REVISION' | grep -E -o "['][0-9]+[:]?[0-9]*[MSP]*[']" | sed -e "s/'//g"`
|
|---|
| 355 | revnum=`$factpath/fitsdump -h $file 2>/dev/null | grep 'REVISION' | grep -E -o "['][0-9]+[:]?[0-9]*[MSP]*[']" | sed -e "s/'//g"`
|
|---|
| 356 | # in newest data start time is in DATE-OBS
|
|---|
| 357 | # in older data start time is in TSTART
|
|---|
| 358 | # in the beginning TSTART was empty
|
|---|
| 359 | #runstart=`$factpath/fitsdump -h -t Events $file 2>/dev/null | grep DATE-OBS | grep -E -o '20[1-9][0-9][\-][01][0-9][\-][0-3][0-9]T[0-2][0-9]:[0-6][0-9]:[0-6][0-9][.][0-9]{6}'`
|
|---|
| 360 | runstart=`$factpath/fitsdump -h $file 2>/dev/null | grep DATE-OBS | grep -E -o '20[1-9][0-9][\-][01][0-9][\-][0-3][0-9]T[0-2][0-9]:[0-6][0-9]:[0-6][0-9][.][0-9]{6}'`
|
|---|
| 361 | #runstart2=`$factpath/fitsdump -h -t Events $file 2>/dev/null | grep TSTART | grep -E -o '20[1-9][0-9][\-][01][0-9][\-][0-3][0-9]T[0-2][0-9]:[0-6][0-9]:[0-6][0-9][.][0-9]{6}'`
|
|---|
| 362 | runstart2=`$factpath/fitsdump -h $file 2>/dev/null | grep TSTART | grep -E -o '20[1-9][0-9][\-][01][0-9][\-][0-3][0-9]T[0-2][0-9]:[0-6][0-9]:[0-6][0-9][.][0-9]{6}'`
|
|---|
| 363 | if [ "$runstart" == "" ]
|
|---|
| 364 | then
|
|---|
| 365 | if [ "$runstart2" == "" ]
|
|---|
| 366 | then
|
|---|
| 367 | #runstart=`$factpath/fitsdump -h -t Events $file 2>/dev/null | grep DATE | grep -v 'DATE-' | grep -E -o '20[1-9][0-9][\-][01][0-9][\-][0-3][0-9]T[0-2][0-9]:[0-6][0-9]:[0-6][0-9][.][0-9]{6}'`
|
|---|
| 368 | runstart=`$factpath/fitsdump -h $file 2>/dev/null | grep DATE | grep -v 'DATE-' | grep -E -o '20[1-9][0-9][\-][01][0-9][\-][0-3][0-9]T[0-2][0-9]:[0-6][0-9]:[0-6][0-9][.][0-9]{6}'`
|
|---|
| 369 | else
|
|---|
| 370 | runstart=$runstart2
|
|---|
| 371 | fi
|
|---|
| 372 | fi
|
|---|
| 373 | # in newest data start time is in DATE-END
|
|---|
| 374 | # in older data start time is in TSTOP
|
|---|
| 375 | # in the beginning TSTOP was empty
|
|---|
| 376 | #runstop=`$factpath/fitsdump -h -t Events $file 2>/dev/null | grep DATE-END | grep -E -o '20[1-9][0-9][\-][01][0-9][\-][0-3][0-9]T[0-2][0-9]:[0-6][0-9]:[0-6][0-9][.][0-9]{6}'`
|
|---|
| 377 | runstop=`$factpath/fitsdump -h $file 2>/dev/null | grep DATE-END | grep -E -o '20[1-9][0-9][\-][01][0-9][\-][0-3][0-9]T[0-2][0-9]:[0-6][0-9]:[0-6][0-9][.][0-9]{6}'`
|
|---|
| 378 | #runstop2=`$factpath/fitsdump -h -t Events $file 2>/dev/null | grep TSTOP | grep -E -o '20[1-9][0-9][\-][01][0-9][\-][0-3][0-9]T[0-2][0-9]:[0-6][0-9]:[0-6][0-9][.][0-9]{6}'`
|
|---|
| 379 | runstop2=`$factpath/fitsdump -h $file 2>/dev/null | grep TSTOP | grep -E -o '20[1-9][0-9][\-][01][0-9][\-][0-3][0-9]T[0-2][0-9]:[0-6][0-9]:[0-6][0-9][.][0-9]{6}'`
|
|---|
| 380 | if [ "$runstop" == "" ]
|
|---|
| 381 | then
|
|---|
| 382 | if [ "$runstop2" == "" ]
|
|---|
| 383 | then
|
|---|
| 384 | runstop=`stat $file 2>/dev/null | grep Modify | grep -E -o '20[1-9][0-9][\-][01][0-9][\-][0-3][0-9][ ][0-2][0-9]:[0-6][0-9]:[0-6][0-9][.][0-9]{9}'`
|
|---|
| 385 | else
|
|---|
| 386 | runstop=$runstop2
|
|---|
| 387 | fi
|
|---|
| 388 | fi
|
|---|
| 389 | fi
|
|---|
| 390 |
|
|---|
| 391 | # set runtype to 'unknown', if no runtype could be retrieved from file
|
|---|
| 392 | if [ "$runtype" == "" ]
|
|---|
| 393 | then
|
|---|
| 394 | runtype="n/a"
|
|---|
| 395 | fi
|
|---|
| 396 | # on 15.11.2011 the runtypes had different names
|
|---|
| 397 | if [ "$date" == "2011/11/15" ]
|
|---|
| 398 | then
|
|---|
| 399 | if [ "$runtype" == "drs-calib" ]
|
|---|
| 400 | then
|
|---|
| 401 | runtype="drs-gain"
|
|---|
| 402 | fi
|
|---|
| 403 | if [ "$runtype" == "drs-time-calib" ]
|
|---|
| 404 | then
|
|---|
| 405 | runtype="drs-time"
|
|---|
| 406 | fi
|
|---|
| 407 | if [ "$runtype" == "pedestal" ]
|
|---|
| 408 | then
|
|---|
| 409 | runtype="drs-pedestal"
|
|---|
| 410 | fi
|
|---|
| 411 | if [ "$runtype" == "light-pulser" ]
|
|---|
| 412 | then
|
|---|
| 413 | runtype="light-pulser-ext"
|
|---|
| 414 | fi
|
|---|
| 415 | if [ "$runtype" == "pedestal-on" ]
|
|---|
| 416 | then
|
|---|
| 417 | runtype="pedestal"
|
|---|
| 418 | fi
|
|---|
| 419 | fi
|
|---|
| 420 | # get runtype
|
|---|
| 421 | query="SELECT fRunTypeKEY FROM RunType WHERE fRunTypeName='"$runtype"'"
|
|---|
| 422 | printprocesslog "DEBUG get run type from DB. QUERY:"$query
|
|---|
| 423 | #result2=( `/usr/bin/mysql -u operator --host=fact01.fact.local --password=$password FactData -e "$query2"` )
|
|---|
| 424 | result2=( `sendquery` )
|
|---|
| 425 | if [ ${#result2} -eq 0 ]
|
|---|
| 426 | then
|
|---|
| 427 | printprocesslog "ERROR "$numberfromname": Could not query fRunTypeKey for runtype "$runtype" ."
|
|---|
| 428 | continue
|
|---|
| 429 | fi
|
|---|
| 430 |
|
|---|
| 431 | # # check if entry has already checksums
|
|---|
| 432 | # query="SELECT fNight FROM RunInfo WHERE Concat(fNight, '_', LPAD(fRunID, 3, 0))='"$numberfromname"'"
|
|---|
| 433 | # query=$query" AND NOT ISNULL(fMd5sumRaw) AND NOT ISNULL(fMd5sumRawZip)"
|
|---|
| 434 | # printprocesslog "DEBUG check if md5sums are alreay in DB. QUERY:"$query
|
|---|
| 435 | # #result5=`/usr/bin/mysql -u operator --host=fact01.fact.local --password=$password FactData -e "$query5"`
|
|---|
| 436 | # result5=`sendquery`
|
|---|
| 437 | #
|
|---|
| 438 | # # get md5sums of raw and zip file
|
|---|
| 439 | # # to safe time for tests and update this can be skipped ($skipmd5sum)
|
|---|
| 440 | # md5sum=
|
|---|
| 441 | # md5sumzip=
|
|---|
| 442 | # if [ "$skipmd5sum" == "no" ] || [ "$skipmd5sum" == "iffilled" ]
|
|---|
| 443 | # then
|
|---|
| 444 | # #echo "skip: "$skipmd5sum >> $logfile 2>&1
|
|---|
| 445 | # #echo "res5: -"$result5"-" >> $logfile 2>&1
|
|---|
| 446 | # #if [ "$skipmd5sum" == "no" ] || [ "$result5$skipmd5sum" == "iffilled" ]
|
|---|
| 447 | # if [ "$skipmd5sum" == "no" ] || [ "$result5" == "" ]
|
|---|
| 448 | # then
|
|---|
| 449 | # #zipfile=`echo $file | sed -e 's/raw/zipraw/' -e 's/fits/fits.gz/'`
|
|---|
| 450 | # # only do the md5sum if the zipfile is already available
|
|---|
| 451 | # if ls $file >/dev/null 2>&1
|
|---|
| 452 | # then
|
|---|
| 453 | # printprocesslog "INFO calculation md5sum for rawfile "$rawfile
|
|---|
| 454 | # md5sum=`md5sum $rawfile | cut -d' ' -f1`
|
|---|
| 455 | # printprocesslog "INFO calculation md5sum for zipfile "$file
|
|---|
| 456 | # md5sumzip=`md5sum $file | cut -d' ' -f1`
|
|---|
| 457 | # fi
|
|---|
| 458 | # fi
|
|---|
| 459 | # fi
|
|---|
| 460 |
|
|---|
| 461 | # insert or update depending on whether run exists
|
|---|
| 462 | if [ "$result3" == "" ]
|
|---|
| 463 | then
|
|---|
| 464 | query="INSERT"
|
|---|
| 465 | querymid=" fNight="$runnumber", fRunID="$filenumberfromname", "
|
|---|
| 466 | querystop=
|
|---|
| 467 | else
|
|---|
| 468 | query="UPDATE"
|
|---|
| 469 | querymid=
|
|---|
| 470 | querystop=" WHERE fNight="$runnumber" AND fRunID="$filenumberfromname
|
|---|
| 471 | fi
|
|---|
| 472 | query=$query" RunInfo SET "$querymid" fRunTypeKey="${result2[0]}
|
|---|
| 473 | #if [ $numfitserrors -eq 0 ]
|
|---|
| 474 | if [ "$filecorrupt" == "no" ]
|
|---|
| 475 | then
|
|---|
| 476 | query=$query", fRunStart='"$runstart"', fRunStop='"$runstop"'"
|
|---|
| 477 | if [ "$numevents" != "" ]
|
|---|
| 478 | then
|
|---|
| 479 | query=$query", fNumEvents="$numevents
|
|---|
| 480 | fi
|
|---|
| 481 | if [ "$roi" != "" ]
|
|---|
| 482 | then
|
|---|
| 483 | query=$query", fROI="$roi
|
|---|
| 484 | fi
|
|---|
| 485 | if [ "$roitm" != "" ]
|
|---|
| 486 | then
|
|---|
| 487 | query=$query", fROITimeMarker="$roitm
|
|---|
| 488 | fi
|
|---|
| 489 | if [ "$numphys" != "" ]
|
|---|
| 490 | then
|
|---|
| 491 | query=$query", fNumPhysicsTrigger="$numphys
|
|---|
| 492 | fi
|
|---|
| 493 | if [ "$numext1" != "" ]
|
|---|
| 494 | then
|
|---|
| 495 | query=$query", fNumExt1Trigger="$numext1
|
|---|
| 496 | fi
|
|---|
| 497 | if [ "$numext2" != "" ]
|
|---|
| 498 | then
|
|---|
| 499 | query=$query", fNumExt2Trigger="$numext2
|
|---|
| 500 | fi
|
|---|
| 501 | if [ "$numelp" != "" ]
|
|---|
| 502 | then
|
|---|
| 503 | query=$query", fNumELPTrigger="$numelp
|
|---|
| 504 | fi
|
|---|
| 505 | if [ "$numilp" != "" ]
|
|---|
| 506 | then
|
|---|
| 507 | query=$query", fNumILPTrigger="$numilp
|
|---|
| 508 | fi
|
|---|
| 509 | if [ "$numped" != "" ]
|
|---|
| 510 | then
|
|---|
| 511 | query=$query", fNumPedestalTrigger="$numped
|
|---|
| 512 | fi
|
|---|
| 513 | if [ "$numtime" != "" ]
|
|---|
| 514 | then
|
|---|
| 515 | query=$query", fNumTimeTrigger="$numtime
|
|---|
| 516 | fi
|
|---|
| 517 | if [ "$numoth" != "" ]
|
|---|
| 518 | then
|
|---|
| 519 | query=$query", fNumOtherTrigger="$numoth
|
|---|
| 520 | fi
|
|---|
| 521 | fi
|
|---|
| 522 | if [ "$checksum" != "" ]
|
|---|
| 523 | then
|
|---|
| 524 | query=$query", fCheckSum='"$checksum"'"
|
|---|
| 525 | fi
|
|---|
| 526 | if [ "$datasum" != "" ]
|
|---|
| 527 | then
|
|---|
| 528 | query=$query", fDataSum='"$datasum"'"
|
|---|
| 529 | fi
|
|---|
| 530 | # if [ "$md5sum" != "" ]
|
|---|
| 531 | # then
|
|---|
| 532 | # query=$query", fMd5sumRaw='"$md5sum"', fMd5sumRawZip='"$md5sumzip"'"
|
|---|
| 533 | # fi
|
|---|
| 534 | if [ "$numdrsfiles" != "" ]
|
|---|
| 535 | then
|
|---|
| 536 | query=$query", fHasDrsFile="$numdrsfiles
|
|---|
| 537 | fi
|
|---|
| 538 | if [ "$step" != "" ]
|
|---|
| 539 | then
|
|---|
| 540 | query=$query", fDrsStep="$step
|
|---|
| 541 | fi
|
|---|
| 542 | if [ "$compiletime" != "" ]
|
|---|
| 543 | then
|
|---|
| 544 | query=$query", fCompileTime='"$compiletime"'"
|
|---|
| 545 | fi
|
|---|
| 546 | if [ "$revnum" != "" ]
|
|---|
| 547 | then
|
|---|
| 548 | query=$query", fRevisionNumber='"$revnum"'"
|
|---|
| 549 | fi
|
|---|
| 550 | query=$query", fFitsFileErrors="$numfitserrors
|
|---|
| 551 | query=$query" "$querystop
|
|---|
| 552 | # send query to DB
|
|---|
| 553 | #echo $query
|
|---|
| 554 | sendquery >/dev/null
|
|---|
| 555 | done
|
|---|
| 556 | done
|
|---|
| 557 |
|
|---|
| 558 | finish
|
|---|
| 559 |
|
|---|
