| 1 | #!/bin/bash
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| 2 |
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| 3 | # option whether to fill all row or only those where information is missing
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| 4 | # $doupdate might be given as environment variable
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| 5 | if [ "$doupdate" = "" ]
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| 6 | then
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| 7 | doupdate="yes" # update all entries (needed when new fields have been added)
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| 8 | doupdate="no" # fill only entries which are not yet existing (default)
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| 9 | fi
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| 10 |
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| 11 | source `dirname $0`/../Sourcefile.sh
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| 12 | printprocesslog "INFO starting $0 with option doupdate="$doupdate
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| 13 |
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| 14 | logfile=$runlogpath"/FillAusCamHum-"$datetime".log"
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| 15 | date >> $logfile
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| 16 |
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| 17 | # setup to use ftools
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| 18 | source $HEADAS/headas-init.sh
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| 19 |
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| 20 | # check if software is available
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| 21 | if ! ls $factpath/fitsdump >/dev/null 2>&1
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| 22 | then
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| 23 | printprocesslog "ERROR "$factpath"/fitsdump is not available."
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| 24 | finish
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| 25 | fi
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| 26 |
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| 27 | # get dates
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| 28 | if [ "$certaindate" != "" ]
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| 29 | then
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| 30 | getdates $certaindate
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| 31 | else
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| 32 | # get all night
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| 33 | #getdates "all"
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| 34 | # get last 6 nights
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| 35 | getdates 6
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| 36 | fi
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| 37 |
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| 38 |
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| 39 |
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| 40 | printprocesslog "INFO processing the following night(s): "${dates[@]}
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| 41 | echo `date`": processing the following night(s): "${dates[@]} >> $logfile 2>&1
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| 42 |
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| 43 | cd $mars
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| 44 |
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| 45 | # do filling of aux data
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| 46 | for date in ${dates[@]}
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| 47 | do
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| 48 | auxdir=$auxdata/$date
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| 49 | runnumber=`echo $date | sed -e 's/\///g'`
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| 50 | if [ $runnumber -lt 20120328 ]
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| 51 | then
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| 52 | continue
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| 53 | fi
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| 54 |
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| 55 | # check if aux files are available from that night
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| 56 | if ! [ -d $auxdir ]
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| 57 | then
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| 58 | printprocesslog "INFO no data available in "$auxdir
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| 59 | continue
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| 60 | else
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| 61 | printprocesslog "INFO processing files in "$auxdir
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| 62 | fi
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| 63 |
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| 64 | # get file numbers from DB
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| 65 | # but only for not-corrupted files
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| 66 | query="SELECT fRunID from RunInfo WHERE fNight="$runnumber" AND fFitsFileErrors=0 "
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| 67 | if [ "$doupdate" = "no" ]
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| 68 | then
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| 69 | query=$query" AND ISNULL(fCamHumidityMean) "
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| 70 | fi
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| 71 | printprocesslog "DEBUG get filenumbers from DB: QUERY: "$query
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| 72 | filenumbers=( `sendquery $query` )
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| 73 | # proceed only if there are files available
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| 74 | if [ ${#filenumbers} -eq 0 ]
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| 75 | then
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| 76 | printprocesslog "INFO No files found in the DB for night "$date
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| 77 | continue
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| 78 | fi
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| 79 |
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| 80 | fschumfile=$auxdir/$runnumber.FSC_CONTROL_HUMIDITY.fits
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| 81 | #if ! [ -e $fschumfile ]
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| 82 | if ! check_file_avail $fschumfile
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| 83 | then
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| 84 | #printprocesslog "WARN "$fschumfile" not found."
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| 85 | continue
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| 86 | else
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| 87 | humnumerrors=`fverify $fschumfile 2>/dev/null | grep -o '[0-9][ ]error(s)' | grep -E -o '[0-9]'`
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| 88 | if [ $humnumerrors -gt 0 ]
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| 89 | then
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| 90 | printprocesslog "WARN for "$fschumfile" fverify returned "$humnumerrors" error(s)."
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| 91 | fi
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| 92 | fi
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| 93 |
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| 94 | fsctempfile=$auxdir/$runnumber.FSC_CONTROL_TEMPERATURE.fits
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| 95 | if ! [ -e $fsctempfile ]
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| 96 | then
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| 97 | printprocesslog "WARN "$fsctempfile" not found."
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| 98 | else
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| 99 | tempnumerrors=`fverify $fsctempfile 2>/dev/null | grep -o '[0-9][ ]error(s)' | grep -E -o '[0-9]'`
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| 100 | if [ $tempnumerrors -gt 0 ]
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| 101 | then
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| 102 | printprocesslog "WARN for $fsctempfile fverify returned "$tempnumerrors" error(s)."
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| 103 | fi
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| 104 | fi
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| 105 |
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| 106 | # fill auxiliary information for files
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| 107 | for filenum in ${filenumbers[@]}
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| 108 | do
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| 109 | printprocesslog "INFO processing file number "$runnumber"_"`printf %03d $filenum`
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| 110 | echo `date`": processing file number "$runnumber"_"`printf %03d $filenum` >> $logfile 2>&1
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| 111 | # get information from rawfile
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| 112 | rawfile=$ziprawdata/$date/$runnumber"_"`printf %03d $filenum`.fits.fz
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| 113 | #if ! [ -e $rawfile ]
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| 114 | if ! check_file_avail $rawfile
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| 115 | then
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| 116 | #if [ $runnumber -lt $checknight ]
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| 117 | #then
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| 118 | # printprocesslog "WARN "$rawfile" not found."
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| 119 | #else
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| 120 | # printprocesslog "INFO "$rawfile" not found."
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| 121 | #fi
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| 122 | continue
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| 123 | fi
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| 124 | #checkfitsfile=`fverify $rawfile 2>/dev/null | grep '0 error(s)'`
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| 125 | #if [ "$checkfitsfile" == "" ]
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| 126 | #then
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| 127 | # numfitserrors=1
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| 128 | # printprocesslog "WARN: "$rawfile" probably corrupted."
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| 129 | # continue
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| 130 | #fi
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| 131 | mjdrefraw=`$factpath/fitsdump -h $rawfile 2>/dev/null | grep 'MJDREF' | grep -E -o '[0-9]{5}'`
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| 132 | tstarti=`$factpath/fitsdump -h $rawfile 2>/dev/null | grep 'TSTARTI' | grep -E -o '[0-9]{5}'`
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| 133 | tstartf=`$factpath/fitsdump -h $rawfile 2>/dev/null | grep 'TSTARTF' | grep -E -o '[0-9][.][0-9]+([E][\-][0-9][0-9])?' | sed -e 's/[E]+*/\\*10\\^/'`
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| 134 | tstopi=`$factpath/fitsdump -h $rawfile 2>/dev/null | grep 'TSTOPI' | grep -E -o '[0-9]{5}'`
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| 135 | tstopf=`$factpath/fitsdump -h $rawfile 2>/dev/null | grep 'TSTOPF' | grep -E -o '[0-9][.][0-9]+([E][\-][0-9][0-9])?' | sed -e 's/[E]+*/\\*10\\^/'`
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| 136 | if [ "$tstarti" == "" ] || [ "$tstopi" == "" ] || [ "$tstartf" == "" ] || [ "$tstopf" == "" ]
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| 137 | then
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| 138 | printprocesslog "WARN: "$rawfile": one of the following keywords is empty or 0: TSTARTI TSTARTF TSTOPI TSTOPF "
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| 139 | continue
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| 140 | fi
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| 141 | # assuming that at least TSTARTI and TSTOPI are consistent
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| 142 | if [ $tstarti -gt 30000 ]
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| 143 | then
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| 144 | tstart=`echo " $tstarti + $tstartf - 40587 " | bc -l`
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| 145 | tstart2=`echo " $tstarti + $tstartf - 40587 - 0.00011574 " | bc -l` # 10 sec
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| 146 | #tstart2=`echo " $tstarti + $tstartf - 40587 - 0.000023148 " | bc -l` # 2 sec
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| 147 | tstop=`echo " $tstopi + $tstopf - 40587 " | bc -l`
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| 148 | else
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| 149 | tstart=`echo " $tstarti + $tstartf " | bc -l`
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| 150 | tstart2=`echo " $tstarti + $tstartf - 0.00011574 " | bc -l` # 10 sec
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| 151 | #tstart2=`echo " $tstarti + $tstartf - 0.000023148 " | bc -l` # 2 sec
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| 152 | tstop=`echo " $tstopi + $tstopf " | bc -l`
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| 153 | fi
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| 154 |
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| 155 | # build query to update runinfo in DB
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| 156 | query="UPDATE RunInfo SET "
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| 157 |
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| 158 | # get information from fsc: T[31]
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| 159 | if [ -e $fschumfile ] && [ $humnumerrors -eq 0 ]
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| 160 | then
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| 161 | hums=( `root -q -b -l fact/processing/camhum.C\("\"$fschumfile\""\,$tstart\,$tstop\) | grep "result" | grep -E -o '[0-9]+[.]?[0-9]*'` )
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| 162 | if [ "${hums[0]}" == "" ]
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| 163 | then
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| 164 | query=$query"fCamHumidityMean=NULL"
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| 165 | else
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| 166 | query=$query"fCamHumidityMean="${hums[0]}
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| 167 | fi
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| 168 | else
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| 169 | query=$query" fCamHumidityMean=NULL"
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| 170 | fi
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| 171 | #fCameraTempMeanRms: mean of rms of single sensors
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| 172 |
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| 173 | # get information from fsc: T[31]
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| 174 | if [ -e $fsctempfile ] && [ $tempnumerrors -eq 0 ]
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| 175 | then
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| 176 | fsctemps=( `root -q -b -l fact/processing/camtemp.C\("\"$fsctempfile\""\,$tstart\,$tstop\) | grep "result" | grep -E -o '[0-9]+[.]?[0-9]*'` )
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| 177 | if [ "${fsctemps[0]}" == "" ]
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| 178 | then
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| 179 | query=$query", fCameraTempMean=NULL"
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| 180 | else
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| 181 | query=$query", fCameraTempMean="${fsctemps[0]}
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| 182 | fi
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| 183 | if [ "${fsctemps[1]}" == "" ]
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| 184 | then
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| 185 | query=$query", fCameraTempRms=NULL"
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| 186 | else
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| 187 | query=$query", fCameraTempRms="${fsctemps[1]}
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| 188 | fi
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| 189 | if [ "${fsctemps[2]}" == "" ]
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| 190 | then
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| 191 | query=$query", fCameraTempRmsMean=NULL"
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| 192 | else
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| 193 | query=$query", fCameraTempRmsMean="${fsctemps[2]}
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| 194 | fi
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| 195 | else
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| 196 | query=$query", fCameraTempMean=NULL"
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| 197 | query=$query", fCameraTempRms=NULL"
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| 198 | query=$query", fCameraTempRmsMean=NULL"
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| 199 | fi
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| 200 | #fCameraTempMeanRms: mean of rms of single sensors
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| 201 |
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| 202 | # add where condition
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| 203 | query=$query" WHERE fNight="$runnumber" AND fRunID="$filenum
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| 204 |
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| 205 | # send query to DB
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| 206 | sendquery >/dev/null
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| 207 | done
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| 208 | done
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| 209 |
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| 210 | finish
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| 211 |
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| 212 |
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