| 1 | #!/bin/bash
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| 2 |
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| 3 | # option
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| 4 | doupdate="yes" # update all entries (needed when new fields have been added)
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| 5 | #doupdate="no" # fill only entries which are not yet existing (default)
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| 6 |
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| 7 | source `dirname $0`/../Sourcefile.sh
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| 8 | printprocesslog "INFO starting $0 with option doupdate="$doupdate
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| 9 |
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| 10 | logfile=$runlogpath"/FillTemp-"$datetime".log"
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| 11 | date >> $logfile
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| 12 |
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| 13 | # setup to use ftools
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| 14 | source $HEADAS/headas-init.sh
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| 15 |
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| 16 | # check if software is available
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| 17 | if ! ls $factpath/fitsdump >/dev/null 2>&1
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| 18 | then
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| 19 | printprocesslog "ERROR "$factpath"/fitsdump is not available."
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| 20 | finish
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| 21 | fi
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| 22 |
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| 23 |
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| 24 | # get last 3, 6 or 9 nights
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| 25 | dates=( `date +%Y/%m/%d --date="-12hour"` `date +%Y/%m/%d --date="-36hour"` `date +%Y/%m/%d --date="-60hour"` \
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| 26 | # `date +%Y/%m/%d --date="-84hour"` `date +%Y/%m/%d --date="-108hour"` `date +%Y/%m/%d --date="-132hour"` \
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| 27 | # `date +%Y/%m/%d --date="-156hour"` `date +%Y/%m/%d --date="-180hour"` `date +%Y/%m/%d --date="-204hour"` \
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| 28 | )
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| 29 | #dates=( `find -L $ziprawdata -mindepth 3 -type d | sort -r | sed "s/\${ziprawdata_for_sed}//g" | sed -e 's/^\///'` ) #all available dates in /loc_data/zipraw
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| 30 |
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| 31 | #dates=( "2013/01/31" )
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| 32 |
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| 33 | printprocesslog "INFO processing the following night(s): "${dates[@]}
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| 34 | echo `date`": processing the following night(s): "${dates[@]} >> $logfile 2>&1
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| 35 |
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| 36 | echo ${dates[@]}
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| 37 |
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| 38 | cd $mars
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| 39 |
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| 40 | # do filling of aux data
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| 41 | for date in ${dates[@]}
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| 42 | do
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| 43 | auxdir=$auxdata/$date
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| 44 | runnumber=`echo $date | sed -e 's/\///g'`
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| 45 |
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| 46 | # check if aux files are available from that night
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| 47 | if ! [ -d $auxdir ]
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| 48 | then
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| 49 | printprocesslog "INFO no data available in "$auxdir
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| 50 | continue
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| 51 | else
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| 52 | printprocesslog "INFO processing files in "$auxdir
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| 53 | fi
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| 54 |
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| 55 | biasvoltagefile=$auxdir/$runnumber.BIAS_CONTROL_VOLTAGE.fits
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| 56 | if ! [ -e $biasvoltagefile ]
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| 57 | then
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| 58 | printprocesslog "WARN "$biasvoltagefile" not found."
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| 59 | continue
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| 60 | else
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| 61 | biasnumerrors=`fverify $biasvoltagefile 2>/dev/null | grep -o '[0-9][ ]error(s)' | grep -E -o '[0-9]'`
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| 62 | if [ $biasnumerrors -gt 0 ]
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| 63 | then
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| 64 | printprocesslog "WARN for $biasvoltagefile fverify returned "$biasnumerrors" error(s)."
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| 65 | fi
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| 66 | fi
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| 67 |
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| 68 | biascurrentfile=$auxdir/$runnumber.BIAS_CONTROL_CURRENT.fits
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| 69 | if ! [ -e $biascurrentfile ]
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| 70 | then
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| 71 | printprocesslog "WARN "$biascurrentfile" not found."
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| 72 | continue
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| 73 | else
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| 74 | biascurrnumerrors=`fverify $biascurrentfile 2>/dev/null | grep -o '[0-9][ ]error(s)' | grep -E -o '[0-9]'`
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| 75 | if [ $biascurrnumerrors -gt 0 ]
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| 76 | then
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| 77 | printprocesslog "WARN for $biascurrentfile fverify returned "$biascurrnumerrors" error(s)."
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| 78 | fi
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| 79 | fi
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| 80 |
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| 81 | feedbackcalfile=$auxdir/$runnumber.FEEDBACK_CALIBRATION.fits
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| 82 | if ! [ -e $feedbackcalfile ]
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| 83 | then
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| 84 | printprocesslog "WARN "$feedbackcalfile" not found."
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| 85 | continue
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| 86 | else
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| 87 | feedbacknumerrors=`fverify $feedbackcalfile 2>/dev/null | grep -o '[0-9][ ]error(s)' | grep -E -o '[0-9]'`
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| 88 | if [ $feedbacknumerrors -gt 0 ]
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| 89 | then
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| 90 | printprocesslog "WARN for $feedbackcalfile fverify returned "$feedbacknumerrors" error(s)."
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| 91 | fi
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| 92 | fi
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| 93 |
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| 94 | echo "run calibrate.C for night "$runnumber
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| 95 | root -q -b -l fact/calibrate.C\($runnumber\)
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| 96 |
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| 97 | calcurrentsfile=$auxdir/$runnumber.CALIBRATED_CURRENTS.fits
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| 98 | calcurrentsfile=/scratch_nfs/calibrated_currents/$runnumber.CALIBRATED_CURRENTS.fits
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| 99 | if ! [ -e $calcurrentsfile ]
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| 100 | then
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| 101 | printprocesslog "WARN "$calcurrentsfile" not found."
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| 102 | continue
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| 103 | else
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| 104 | calnumerrors=`fverify $calcurrentsfile 2>/dev/null | grep -o '[0-9][ ]error(s)' | grep -E -o '[0-9]'`
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| 105 | if [ $calnumerrors -gt 0 ]
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| 106 | then
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| 107 | printprocesslog "WARN for $calcurrentsfile fverify returned "$calnumerrors" error(s)."
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| 108 | fi
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| 109 | fi
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| 110 |
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| 111 |
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| 112 | # get file numbers from DB
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| 113 | # but only for not-corrupted files
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| 114 | query="SELECT fRunID from RunInfo WHERE fNight="$runnumber" AND fFitsFileErrors=0 "
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| 115 | if [ "$doupdate" = "no" ]
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| 116 | then
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| 117 | query=$query" AND ISNULL(fCurrentsMean) "
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| 118 | fi
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| 119 |
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| 120 | printprocesslog "DEBUG get filenumbers from DB: QUERY: "$query
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| 121 | filenumbers=( `sendquery $query` )
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| 122 | if [ ${#filenumbers} -eq 0 ]
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| 123 | then
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| 124 | printprocesslog "INFO No files found in the DB for night "$date
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| 125 | continue
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| 126 | fi
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| 127 |
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| 128 | # fill auxiliary information for files
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| 129 | for filenum in ${filenumbers[@]}
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| 130 | do
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| 131 | printprocesslog "INFO processing file number "$runnumber"_"`printf %03d $filenum`
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| 132 | echo `date`": processing file number "$runnumber"_"`printf %03d $filenum` >> $logfile 2>&1
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| 133 | # get information from rawfile
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| 134 | rawfile=$ziprawdata/$date/$runnumber"_"`printf %03d $filenum`.fits.gz
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| 135 | if ! [ -e $rawfile ]
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| 136 | then
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| 137 | printprocesslog "ERROR: "$rawfile" not found."
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| 138 | continue
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| 139 | fi
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| 140 | runtype=`$factpath/fitsdump -h $rawfile 2>/dev/null | grep RUNTYPE | grep -E -o "['][a-z-]+[']" | sed -e "s/'//g"`
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| 141 | mjdrefraw=`$factpath/fitsdump -h $rawfile 2>/dev/null | grep 'MJDREF' | grep -E -o '[0-9]{5}'`
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| 142 | tstarti=`$factpath/fitsdump -h $rawfile 2>/dev/null | grep 'TSTARTI' | grep -E -o '[0-9]{5}'`
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| 143 | tstartf=`$factpath/fitsdump -h $rawfile 2>/dev/null | grep 'TSTARTF' | grep -E -o '0[.][0-9]+'`
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| 144 | tstopi=`$factpath/fitsdump -h $rawfile 2>/dev/null | grep 'TSTOPI' | grep -E -o '[0-9]{5}'`
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| 145 | tstopf=`$factpath/fitsdump -h $rawfile 2>/dev/null | grep 'TSTOPF' | grep -E -o '0[.][0-9]+'`
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| 146 | if [ "$tstarti" == "" ] || [ "$tstopi" == "" ] || [ "$tstartf" == "" ] || [ "$tstopf" == "" ]
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| 147 | then
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| 148 | printprocesslog "WARN: "$rawfile": one of the following keywords is empty or 0: TSTARTI TSTARTF TSTOPI TSTOPF "
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| 149 | continue
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| 150 | fi
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| 151 | # assuming that at least TSTARTI and TSTOPI are consistent
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| 152 | #echo $rawfile
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| 153 | #echo $tstarti
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| 154 | #echo $tstopi
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| 155 | #echo $tstartf
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| 156 | #echo $tstopf
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| 157 | if [ $tstarti -gt 30000 ]
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| 158 | then
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| 159 | tstart=`echo " $tstarti + $tstartf - 40587 " | bc -l`
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| 160 | tstart2=`echo " $tstarti + $tstartf - 40587 - 0.00011574 " | bc -l` # 10 sec
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| 161 | #tstart2=`echo " $tstarti + $tstartf - 40587 - 0.000023148 " | bc -l` # 2 sec
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| 162 | tstop=`echo " $tstopi + $tstopf - 40587 " | bc -l`
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| 163 | else
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| 164 | tstart=`echo " $tstarti + $tstartf " | bc -l`
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| 165 | tstart2=`echo " $tstarti + $tstartf - 0.00011574 " | bc -l` # 10 sec
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| 166 | #tstart2=`echo " $tstarti + $tstartf - 0.000023148 " | bc -l` # 2 sec
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| 167 | tstop=`echo " $tstopi + $tstopf " | bc -l`
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| 168 | fi
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| 169 |
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| 170 | # build query to update runinfo in DB
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| 171 | query="UPDATE RunInfo SET "
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| 172 |
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| 173 | # get information from fsc: T[31]
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| 174 | if [ -e $calcurrentsfile ] && [ $calnumerrors -eq 0 ]
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| 175 | then
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| 176 | #root -q -b -l fact/curavg.C\("\"$calcurrentsfile\""\,$tstart\,$tstop\) # | grep "result" | grep -E -o '[0-9]+[.]?[0-9]*'
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| 177 | currents=( `root -q -b -l fact/curavg.C\("\"$calcurrentsfile\""\,$tstart\,$tstop\) | grep "result" | grep -E -o '[0-9]+[.]?[0-9]*'` )
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| 178 | if [ "${currents[0]}" == "" ]
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| 179 | then
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| 180 | query=$query"fCurrentsMedMean=NULL"
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| 181 | else
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| 182 | query=$query"fCurrentsMedMean="${currents[0]}
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| 183 | fi
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| 184 | if [ "${currents[1]}" == "" ]
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| 185 | then
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| 186 | query=$query", fCurrentsMedRms=NULL"
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| 187 | else
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| 188 | query=$query", fCurrentsMedRms="${currents[1]}
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| 189 | fi
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| 190 | if [ "${currents[2]}" == "" ]
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| 191 | then
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| 192 | query=$query", fCurrentsDevMean=NULL"
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| 193 | else
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| 194 | query=$query", fCurrentsDevMean="${currents[2]}
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| 195 | fi
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| 196 | if [ "${currents[3]}" == "" ]
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| 197 | then
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| 198 | query=$query", fCurrentsDevRms=NULL"
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| 199 | else
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| 200 | query=$query", fCurrentsDevRms="${currents[3]}
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| 201 | fi
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| 202 | else
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| 203 | query=$query" fCurrentsMedMean=NULL"
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| 204 | query=$query", fCurrentsMedRms=NULL"
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| 205 | query=$query", fCurrentsDevMean=NULL"
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| 206 | query=$query", fCurrentsDevRms=NULL"
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| 207 | fi
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| 208 |
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| 209 | # add where condition
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| 210 | query=$query" WHERE fNight="$runnumber" AND fRunID="$filenum
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| 211 |
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| 212 | echo $query
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| 213 | # send query to DB
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| 214 | sendquery >/dev/null
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| 215 | done
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| 216 | done
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| 217 |
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| 218 | finish
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| 219 |
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| 220 |
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