| 1 | #!/bin/bash
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| 2 |
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| 3 | # option
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| 4 | doupdate="yes" # update all entries (needed when new fields have been added)
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| 5 | #doupdate="no" # fill only entries which are not yet existing (default)
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| 6 |
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| 7 | source `dirname $0`/../Sourcefile.sh
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| 8 | printprocesslog "INFO starting $0 with option doupdate="$doupdate
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| 9 |
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| 10 | logfile=$runlogpath"/FillCurrents-"$datetime".log"
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| 11 | date >> $logfile
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| 12 |
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| 13 | # setup to use ftools
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| 14 | source $HEADAS/headas-init.sh
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| 15 |
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| 16 | # check if software is available
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| 17 | if ! ls $factpath/fitsdump >/dev/null 2>&1
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| 18 | then
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| 19 | printprocesslog "ERROR "$factpath"/fitsdump is not available."
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| 20 | finish
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| 21 | fi
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| 22 |
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| 23 |
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| 24 | # get last 3, 6 or 9 nights
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| 25 | #dates=( `date +%Y/%m/%d --date="-12hour"` `date +%Y/%m/%d --date="-36hour"` `date +%Y/%m/%d --date="-60hour"` \
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| 26 | # `date +%Y/%m/%d --date="-84hour"` `date +%Y/%m/%d --date="-108hour"` `date +%Y/%m/%d --date="-132hour"` \
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| 27 | # `date +%Y/%m/%d --date="-156hour"` `date +%Y/%m/%d --date="-180hour"` `date +%Y/%m/%d --date="-204hour"` \
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| 28 | # )
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| 29 | #dates=( `find -L $ziprawdata -mindepth 3 -type d | sort -r | sed "s/\${ziprawdata_for_sed}//g" | sed -e 's/^\///'` ) #all available dates in /loc_data/zipraw
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| 30 |
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| 31 | dates=("2013/05/08 2013/05/07 2013/05/06 2013/05/05 2013/05/04 2013/05/03 2013/05/02 2013/05/01 2013/04/30 2013/04/29 2013/04/28 2013/04/27 2013/04/22 2013/04/21 2013/04/20 2013/04/19 2013/04/18 2013/04/17 2013/04/16 2013/04/15 2013/04/14 2013/04/13 2013/04/10 2013/04/09 2013/04/08 2013/04/07 2013/04/06 2013/04/05 2013/04/01 2013/03/31 2013/03/30 2013/03/29 2013/03/28 2013/03/25 2013/03/24 2013/03/23 2013/03/22 2013/03/21 2013/03/20 2013/03/19 2013/03/18 2013/03/17 2013/03/15 2013/03/14 2013/03/13 2013/03/12 2013/03/11 2013/03/09 2013/03/08 2013/03/07 2013/03/06 2013/03/02 2013/02/22 2013/02/20 2013/02/17 2013/02/16 2013/02/15 2013/02/14 2013/02/10 2013/02/09 2013/02/08 2013/02/07 2013/02/06 2013/02/05 2013/02/04 2013/02/03 2013/02/02 2013/02/01 2013/01/31 2013/01/30 2013/01/29 2013/01/28 2013/01/27 2013/01/24 2013/01/23 2013/01/22 2013/01/21 2013/01/20 2013/01/19 2013/01/18 2013/01/17 2013/01/16 2013/01/15 2013/01/14 2013/01/13 2013/01/12 2013/01/11 2013/01/10 2013/01/09 2013/01/08 2013/01/07 2013/01/06 2013/01/05 2013/01/04 2013/01/03 2013/01/02 2012/12/23 2012/12/22 2012/12/21 2012/12/20 2012/12/19 2012/12/18 2012/12/17 2012/12/16 2012/12/15 2012/12/14 2012/12/13 2012/12/11 2012/12/10 2012/12/09 2012/12/08 2012/12/07 2012/12/06 2012/12/05 2012/12/04 2012/12/03 2012/12/02 2012/12/01 2012/11/26 2012/11/24 2012/11/23 2012/11/22 2012/11/21 2012/11/20 2012/11/19 2012/11/18 2012/11/17 2012/11/15 2012/11/14 2012/11/13 2012/11/12 2012/11/09 2012/11/08 2012/10/26 2012/10/25 2012/10/24 2012/10/23 2012/10/22 2012/10/21 2012/10/20 2012/10/17 2012/10/16 2012/10/15 2012/10/12 2012/10/11 2012/10/10 2012/10/09 2012/10/08 2012/10/06 2012/10/05 2012/10/04 2012/10/03 2012/10/02 2012/10/01 2012/09/26 2012/09/25 2012/09/24 2012/09/23 2012/09/22 2012/09/21 2012/09/20 2012/09/19 2012/09/18 2012/09/17 2012/09/16 2012/09/13 2012/08/22 2012/08/21 2012/08/20 2012/08/19 2012/08/18 2012/08/13 2012/08/12 2012/08/10 2012/08/09 2012/08/08 2012/08/07 2012/08/04 2012/08/03 2012/08/02 2012/08/01 2012/07/31 2012/07/30 2012/07/28 2012/07/27 2012/07/26 2012/07/25 2012/07/24 2012/07/23 2012/07/18 2012/07/16 2012/07/15 2012/07/14 2012/07/13 2012/07/12 2012/07/11 2012/07/10 2012/07/09 2012/07/08 2012/07/07 2012/07/06 2012/07/05 2012/07/02 2012/07/01 2012/06/30 2012/06/29 2012/06/28 2012/06/27 2012/06/26 2012/06/25 2012/06/24 2012/06/23 2012/06/22 2012/06/21 2012/06/20 2012/06/19 2012/06/18 2012/06/17 2012/06/16 2012/06/15 2012/06/14 2012/06/13 2012/06/12 2012/06/11 2012/06/10 2012/06/09 2012/06/08 2012/06/07 2012/06/06 2012/06/05 2012/06/01 2012/05/31 2012/05/30 2012/05/29 2012/05/28 2012/05/27 2012/05/26 2012/05/25 2012/05/24 2012/05/23 2012/05/22 2012/05/21 2012/05/20 2012/05/18 2012/05/17 2012/05/16 2012/05/15 2012/05/14 2012/05/13 2012/05/12 2012/05/10 2012/05/09 2012/05/08 2012/05/03 2012/04/17 2012/04/16 2012/04/15 2012/04/14 2012/04/13 2012/04/12 2012/04/10 2012/04/09 2012/04/08 2012/04/06 2012/04/05 2012/04/03 2012/03/30 2012/03/29 2012/03/28 2012/03/27 2012/03/26 2012/03/25 2012/03/24 2012/03/22 2012/03/21 2012/03/20 2012/03/18 2012/03/17 2012/03/16 2012/03/15 2012/03/14 2012/03/13 2012/03/12 2012/03/11 2012/03/10 2012/03/09 2012/03/08 2012/03/06 2012/03/05 2012/03/04 2012/03/03 2012/03/02 2012/03/01 2012/02/29 2012/02/28 2012/02/27 2012/02/26 2012/02/25 2012/02/24 2012/02/23 2012/02/22 2012/02/21 2012/02/20 2012/02/19 2012/02/18 2012/02/17 2012/02/16 2012/02/09 2012/02/08 2012/02/04 2012/02/03 2012/02/02 2012/02/01 2012/01/31 2012/01/26 2012/01/25 2012/01/24 2012/01/23 2012/01/21 2012/01/20 2012/01/19 2012/01/17 2012/01/15 2012/01/14 2012/01/13 2011/12/13 2011/12/12 2011/12/08 2011/12/07 2011/12/06 2011/12/05 2011/12/03 2011/12/02 2011/12/01 2011/11/30 2011/11/29 2011/11/28 2011/11/27 2011/11/26 2011/11/25 2011/11/24 2011/11/23 2011/11/22 2011/11/21 2011/11/20 2011/11/19 2011/11/18 2011/11/17 2011/11/16 2011/11/15 2011/11/10 2011/11/09 2011/11/08 2011/11/07 2011/11/06 2011/11/05 2011/11/04 2011/11/03 2011/11/02 2011/11/01 2011/10/31 2011/10/30 2011/10/29 2011/10/28 2011/10/26 2011/10/25 2011/10/24 2011/10/19 2011/10/17 2011/10/16 2011/10/15 2011/10/14 2011/10/13 2011/10/12 2011/10/11 2011/10/10 2011/10/09 2011/10/06 2011/09/17 2011/09/16 2011/09/15 2011/09/14 2011/09/13 2011/09/12 2011/09/11 2011/09/10 2011/09/09 2011/09/08 2011/09/07 2011/09/06 2011/09/05 2011/09/02 2011/08/24 2011/08/23 2011/08/11 2011/08/09 2011/08/08 2011/08/05 2011/08/04 2011/08/03 2011/08/02 2011/07/27 2011/07/22")
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| 32 |
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| 33 | #dates=( "2013/05/28" )
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| 34 |
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| 35 | printprocesslog "INFO processing the following night(s): "${dates[@]}
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| 36 | echo `date`": processing the following night(s): "${dates[@]} >> $logfile 2>&1
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| 37 |
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| 38 | #echo ${dates[@]}
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| 39 |
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| 40 | cd $mars
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| 41 |
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| 42 | # do filling of aux data
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| 43 | for date in ${dates[@]}
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| 44 | do
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| 45 | auxdir=$auxdata/$date
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| 46 | runnumber=`echo $date | sed -e 's/\///g'`
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| 47 |
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| 48 | if [ $runnumber -lt 20130301 ]
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| 49 | then
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| 50 | continue
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| 51 | fi
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| 52 |
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| 53 | # check if aux files are available from that night
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| 54 | if ! [ -d $auxdir ]
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| 55 | then
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| 56 | printprocesslog "INFO no data available in "$auxdir
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| 57 | continue
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| 58 | else
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| 59 | printprocesslog "INFO processing files in "$auxdir
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| 60 | fi
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| 61 |
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| 62 | biasvoltagefile=$auxdir/$runnumber.BIAS_CONTROL_VOLTAGE.fits
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| 63 | if ! [ -e $biasvoltagefile ]
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| 64 | then
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| 65 | printprocesslog "WARN "$biasvoltagefile" not found."
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| 66 | continue
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| 67 | else
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| 68 | biasnumerrors=`fverify $biasvoltagefile 2>/dev/null | grep -o '[0-9][ ]error(s)' | grep -E -o '[0-9]'`
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| 69 | if [ $biasnumerrors -gt 0 ]
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| 70 | then
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| 71 | printprocesslog "WARN for $biasvoltagefile fverify returned "$biasnumerrors" error(s)."
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| 72 | fi
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| 73 | fi
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| 74 |
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| 75 | biascurrentfile=$auxdir/$runnumber.BIAS_CONTROL_CURRENT.fits
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| 76 | if ! [ -e $biascurrentfile ]
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| 77 | then
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| 78 | printprocesslog "WARN "$biascurrentfile" not found."
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| 79 | continue
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| 80 | else
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| 81 | biascurrnumerrors=`fverify $biascurrentfile 2>/dev/null | grep -o '[0-9][ ]error(s)' | grep -E -o '[0-9]'`
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| 82 | if [ $biascurrnumerrors -gt 0 ]
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| 83 | then
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| 84 | printprocesslog "WARN for $biascurrentfile fverify returned "$biascurrnumerrors" error(s)."
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| 85 | fi
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| 86 | fi
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| 87 |
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| 88 | feedbackcalfile=$auxdir/$runnumber.FEEDBACK_CALIBRATION.fits
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| 89 | if ! [ -e $feedbackcalfile ]
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| 90 | then
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| 91 | printprocesslog "WARN "$feedbackcalfile" not found."
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| 92 | continue
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| 93 | else
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| 94 | feedbacknumerrors=`fverify $feedbackcalfile 2>/dev/null | grep -o '[0-9][ ]error(s)' | grep -E -o '[0-9]'`
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| 95 | if [ $feedbacknumerrors -gt 0 ]
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| 96 | then
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| 97 | printprocesslog "WARN for $feedbackcalfile fverify returned "$feedbacknumerrors" error(s)."
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| 98 | fi
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| 99 | fi
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| 100 |
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| 101 | calcurrentsfile=$auxdir/$runnumber.FEEDBACK_CALIBRATED_CURRENTS.fits
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| 102 | if ! [ -e $calcurrentsfile ]
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| 103 | then
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| 104 | printprocesslog "INFO run calibrate.C for night "$runnumber
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| 105 | printprocesslog "INFO run calibrate.C for night "$runnumber >> $logfile 2>&1
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| 106 | root -q -b -l fact/calibrate.C\($runnumber\)
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| 107 | calcurrentsfile=/gpfs/scratch/fact/calibrated_currents/$runnumber.CALIBRATED_CURRENTS.fits
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| 108 | fi
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| 109 |
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| 110 | #calcurrentsfile=$auxdir/$runnumber.FEEDBACK_CALIBRATED_CURRENTS.fits
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| 111 | #calcurrentsfile=/scratch_nfs/calibrated_currents/$runnumber.CALIBRATED_CURRENTS.fits
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| 112 | #calcurrentsfile=/gpfs/scratch/fact/calibrated_currents/$runnumber.CALIBRATED_CURRENTS.fits
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| 113 | if ! [ -e $calcurrentsfile ]
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| 114 | then
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| 115 | printprocesslog "WARN "$calcurrentsfile" not found."
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| 116 | continue
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| 117 | else
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| 118 | calnumerrors=`fverify $calcurrentsfile 2>/dev/null | grep -o '[0-9][ ]error(s)' | grep -E -o '[0-9]'`
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| 119 | if [ $calnumerrors -gt 0 ]
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| 120 | then
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| 121 | printprocesslog "WARN for $calcurrentsfile fverify returned "$calnumerrors" error(s)."
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| 122 | fi
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| 123 | fi
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| 124 |
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| 125 |
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| 126 | # get file numbers from DB
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| 127 | # but only for not-corrupted files
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| 128 | query="SELECT fRunID from RunInfo WHERE fNight="$runnumber" AND fFitsFileErrors=0 "
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| 129 | if [ "$doupdate" = "no" ]
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| 130 | then
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| 131 | query=$query" AND ISNULL(fCurrentsMedMean) "
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| 132 | fi
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| 133 |
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| 134 | printprocesslog "DEBUG get filenumbers from DB: QUERY: "$query
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| 135 | filenumbers=( `sendquery $query` )
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| 136 | if [ ${#filenumbers} -eq 0 ]
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| 137 | then
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| 138 | printprocesslog "INFO No files found in the DB for night "$date
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| 139 | continue
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| 140 | fi
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| 141 |
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| 142 | # fill auxiliary information for files
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| 143 | for filenum in ${filenumbers[@]}
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| 144 | do
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| 145 | printprocesslog "INFO processing file number "$runnumber"_"`printf %03d $filenum`
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| 146 | echo `date`": processing file number "$runnumber"_"`printf %03d $filenum` >> $logfile 2>&1
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| 147 | # get information from rawfile
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| 148 | rawfile=$ziprawdata/$date/$runnumber"_"`printf %03d $filenum`.fits.gz
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| 149 | if ! [ -e $rawfile ]
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| 150 | then
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| 151 | printprocesslog "ERROR: "$rawfile" not found."
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| 152 | continue
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| 153 | fi
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| 154 | runtype=`$factpath/fitsdump -h $rawfile 2>/dev/null | grep RUNTYPE | grep -E -o "['][a-z-]+[']" | sed -e "s/'//g"`
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| 155 | mjdrefraw=`$factpath/fitsdump -h $rawfile 2>/dev/null | grep 'MJDREF' | grep -E -o '[0-9]{5}'`
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| 156 | tstarti=`$factpath/fitsdump -h $rawfile 2>/dev/null | grep 'TSTARTI' | grep -E -o '[0-9]{5}'`
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| 157 | tstartf=`$factpath/fitsdump -h $rawfile 2>/dev/null | grep 'TSTARTF' | grep -E -o '0[.][0-9]+'`
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| 158 | tstopi=`$factpath/fitsdump -h $rawfile 2>/dev/null | grep 'TSTOPI' | grep -E -o '[0-9]{5}'`
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| 159 | tstopf=`$factpath/fitsdump -h $rawfile 2>/dev/null | grep 'TSTOPF' | grep -E -o '0[.][0-9]+'`
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| 160 | if [ "$tstarti" == "" ] || [ "$tstopi" == "" ] || [ "$tstartf" == "" ] || [ "$tstopf" == "" ]
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| 161 | then
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| 162 | printprocesslog "WARN: "$rawfile": one of the following keywords is empty or 0: TSTARTI TSTARTF TSTOPI TSTOPF "
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| 163 | continue
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| 164 | fi
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| 165 | # assuming that at least TSTARTI and TSTOPI are consistent
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| 166 | #echo $rawfile
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| 167 | #echo $tstarti
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| 168 | #echo $tstopi
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| 169 | #echo $tstartf
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| 170 | #echo $tstopf
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| 171 | if [ $tstarti -gt 30000 ]
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| 172 | then
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| 173 | tstart=`echo " $tstarti + $tstartf - 40587 " | bc -l`
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| 174 | tstart2=`echo " $tstarti + $tstartf - 40587 - 0.00011574 " | bc -l` # 10 sec
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| 175 | #tstart2=`echo " $tstarti + $tstartf - 40587 - 0.000023148 " | bc -l` # 2 sec
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| 176 | tstop=`echo " $tstopi + $tstopf - 40587 " | bc -l`
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| 177 | else
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| 178 | tstart=`echo " $tstarti + $tstartf " | bc -l`
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| 179 | tstart2=`echo " $tstarti + $tstartf - 0.00011574 " | bc -l` # 10 sec
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| 180 | #tstart2=`echo " $tstarti + $tstartf - 0.000023148 " | bc -l` # 2 sec
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| 181 | tstop=`echo " $tstopi + $tstopf " | bc -l`
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| 182 | fi
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| 183 |
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| 184 | # build query to update runinfo in DB
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| 185 | query="UPDATE RunInfo SET "
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| 186 |
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| 187 | # get information from fsc: T[31]
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| 188 | if [ -e $calcurrentsfile ] && [ $calnumerrors -eq 0 ]
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| 189 | then
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| 190 | #root -q -b -l fact/curavg.C\("\"$calcurrentsfile\""\,$tstart\,$tstop\) # | grep "result" | grep -E -o '[0-9]+[.]?[0-9]*'
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| 191 | #currents=( `root -q -b -l fact/curavg.C\("\"$calcurrentsfile\""\,$tstart\,$tstop\) | grep "result" | grep -E -o '[0-9]+[.]?[0-9]*'` )
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| 192 | currents=( `root -q -b -l fact/processing/currents.C\("\"$calcurrentsfile\""\,$tstart\,$tstop\) | grep "result" | grep -E -o '[-]?[0-9]+[.]?[0-9]*'` )
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| 193 | if [ "${currents[0]}" == "" ]
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| 194 | then
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| 195 | query=$query"fCurrentsMedMean=NULL"
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| 196 | else
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| 197 | query=$query"fCurrentsMedMean="${currents[0]}
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| 198 | fi
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| 199 | if [ "${currents[1]}" == "" ]
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| 200 | then
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| 201 | query=$query", fCurrentsMedRms=NULL"
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| 202 | else
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| 203 | query=$query", fCurrentsMedRms="${currents[1]}
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| 204 | fi
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| 205 | if [ "${currents[2]}" == "" ]
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| 206 | then
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| 207 | query=$query", fCurrentsDevMean=NULL"
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| 208 | else
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| 209 | query=$query", fCurrentsDevMean="${currents[2]}
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| 210 | fi
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| 211 | if [ "${currents[3]}" == "" ]
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| 212 | then
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| 213 | query=$query", fCurrentsDevRms=NULL"
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| 214 | else
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| 215 | query=$query", fCurrentsDevRms="${currents[3]}
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| 216 | fi
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| 217 | if [ "${currents[4]}" == "" ]
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| 218 | then
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| 219 | query=$query", fCurrentsMedMeanBeg=NULL"
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| 220 | else
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| 221 | query=$query", fCurrentsMedMeanBeg="${currents[4]}
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| 222 | fi
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| 223 | if [ "${currents[5]}" == "" ]
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| 224 | then
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| 225 | query=$query", fCurrentsMedMeanEnd=NULL"
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| 226 | else
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| 227 | query=$query", fCurrentsMedMeanEnd="${currents[5]}
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| 228 | fi
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| 229 | if [ "${currents[6]}" == "" ]
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| 230 | then
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| 231 | query=$query", fCurrentsDiffToPrediction=NULL"
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| 232 | else
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| 233 | query=$query", fCurrentsDiffToPrediction="${currents[6]}
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| 234 | fi
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| 235 | else
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| 236 | query=$query" fCurrentsMedMean=NULL"
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| 237 | query=$query", fCurrentsMedRms=NULL"
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| 238 | query=$query", fCurrentsDevMean=NULL"
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| 239 | query=$query", fCurrentsDevRms=NULL"
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| 240 | query=$query", fCurrentsMedMeanBeg=NULL"
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| 241 | query=$query", fCurrentsMedMeanEnd=NULL"
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| 242 | query=$query", fCurrentsDiffToPrediction=NULL"
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| 243 | fi
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| 244 |
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| 245 | # add where condition
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| 246 | query=$query" WHERE fNight="$runnumber" AND fRunID="$filenum
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| 247 |
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| 248 | #echo $query
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| 249 | # send query to DB
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| 250 | sendquery >/dev/null
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| 251 | done
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| 252 | done
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| 253 |
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| 254 | finish
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| 255 |
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| 256 |
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