1 | #!/bin/bash
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2 |
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3 | # missing:
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4 | # vferify of files
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5 | # only treat file if it is there
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6 |
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7 | # mjd of 1970-01-01
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8 | # needed in this script as for 1 day the mjd in the aux files are inconsistent
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9 | # mjdref=40587
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10 |
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11 | # known:
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12 | # 2011/11/22 MJDREF in DRIVE empty, Time > 55000
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13 | # 2011/11/23 MJDREF in DRIVE not empty, Time > 55000
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14 | # 2011/11/24 MJDREF in DRIVE not empty, Time > 15000
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15 | # raw files
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16 | # 2011/11/21 no MJDREF
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17 | # 2011/11/22 MJDREF
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18 | # further things: https://www.fact-project.org/logbook/showthread.php?tid=67
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19 |
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20 | # trigger rate has as first value -1, but with using the median it should be fine
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21 |
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22 | # option whether to fill all row or only those where information is missing
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23 | # $doupdate might be given as environment variable
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24 | if [ "$doupdate" = "" ]
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25 | then
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26 | doupdate="yes" # update all entries (needed when new fields have been added)
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27 | doupdate="no" # fill only entries which are not yet existing (default)
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28 | fi
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29 |
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30 | source `dirname $0`/../Sourcefile.sh
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31 | printprocesslog "INFO starting $0 with option doupdate="$doupdate
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32 |
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33 | logfile=$runlogpath"/FillAuxData-"$datetime".log"
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34 | date >> $logfile
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35 |
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36 | function getfitsstatistics()
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37 | {
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38 | # $1 filename
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39 | # $2 colname
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40 | # $3 tstart
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41 | # $4 tstop
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42 | good=
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43 | min=
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44 | mean=
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45 | median=
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46 | max=
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47 | tmpfile=`dirname $0`/`basename $1`.tmp
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48 | echo "ftcopy $1'[col Time]' - | ftstat - | grep 'mean' | grep -E -o [0-9]+[.] | sed -e 's/[.]//g'" >> $logfile
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49 | timefromfile=`ftcopy $1'[col Time]' - 2>>$logfile | ftstat - 2>>$logfile | grep 'mean' | grep -E -o [0-9]+[.] | sed -e 's/[.]//g'`
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50 | echo "here-"$timefromfile"-" >> $logfile
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51 | if [ "$timefromfile" == "" ]
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52 | then
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53 | printprocesslog "WARN couldn't get time from file "$1
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54 | echo "WARN couldn't get time from file "$1
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55 | continue
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56 | fi
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57 | if [ $timefromfile -gt 30000 ]
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58 | then
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59 | echo "ftcopy $1'[Time - 40587> '${3}' && Time - 40587< '${4}' ][col '${2}';Time]' - | ftcopy -'[col '${2}']' - | ftstat -" >> $logfile
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60 | #ftcopy $1'[Time - 40587> '${3}' && Time - 40587< '${4}' ][col '${2}';Time]' - | ftcopy -'[col '${2}']' - | ftstat -
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61 | ftcopy $1'[Time - 40587> '${3}' && Time - 40587< '${4}' ][col '${2}';Time]' - 2>>$logfile | ftcopy -'[col '${2}']' - 2>>$logfile | ftstat - 2>>$logfile > $tmpfile
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62 | else
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63 | echo "ftcopy $1'[Time> '${3}' && Time< '${4}' ][col '${2}';Time]' - | ftcopy -'[col '${2}']' - | ftstat -" >> $logfile
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64 | #ftcopy $1'[Time> '${3}' && Time< '${4}' ][col '${2}';Time]' - | ftcopy -'[col '${2}']' - | ftstat -
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65 | ftcopy $1'[Time> '${3}' && Time< '${4}' ][col '${2}';Time]' - 2>>$logfile | ftcopy -'[col '${2}']' - 2>>$logfile | ftstat - 2>>$logfile > $tmpfile
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66 | fi
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67 | good=`cat $tmpfile | grep 'good' | grep -E -o '[-]?[0-9]+[.]?[0-9]*'`
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68 | min=`cat $tmpfile | grep 'min' | grep -E -o '[-]?[0-9]+[.]?[0-9]*'`
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69 | mean=`cat $tmpfile | grep 'mean' | grep -E -o '[-]?[0-9]+[.]?[0-9]*'`
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70 | median=`cat $tmpfile | grep 'median' | grep -E -o '[-]?[0-9]+[.]?[0-9]*'`
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71 | max=`cat $tmpfile | grep 'max' | grep -E -o '[-]?[0-9]+[.]?[0-9]*'`
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72 | sigma=`cat $tmpfile | grep 'sigma' | grep -E -o '[-]?[0-9]+[.]?[0-9]*'`
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73 | if [ "$good" = "" ]
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74 | then
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75 | printprocesslog "WARN couldn't get statistics from file $1 for run $date $file"
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76 | rm $tmpfile
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77 | continue
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78 | #finish
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79 | fi
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80 | #echo "good: "$good
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81 | #echo "min: "$min
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82 | #echo "max: "$max
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83 | #echo "mean: "$max
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84 | #echo "median: "$max
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85 | rm $tmpfile
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86 | }
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87 |
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88 | # setup to use ftools
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89 | source $HEADAS/headas-init.sh
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90 |
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91 | # check if software is available
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92 | if ! ls $factpath/fitsdump >/dev/null 2>&1
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93 | then
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94 | printprocesslog "ERROR "$factpath"/fitsdump is not available."
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95 | finish
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96 | fi
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97 |
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98 | # get dates
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99 | if [ "$certaindate" != "" ]
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100 | then
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101 | checkstring=`echo $certaindate | grep -E -o '^20[0-9][0-9]\/[01][0-9]\/[0-3][0-9]$'`
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102 | if [ "$checkstring" = "" ]
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103 | then
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104 | echo "Please give the variable certaindate in the correct format (YYYY/MM/DD)"
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105 | finish
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106 | fi
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107 | getdates $certaindate
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108 | else
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109 | # get all night
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110 | #getdates "all"
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111 | # get last 3 nights if hour between 7 and 19h, else only current night
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112 | getdates 3 7 19
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113 | fi
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114 |
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115 | printprocesslog "INFO processing the following night(s): "${dates[@]}
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116 | echo `date`": processing the following night(s): "${dates[@]} >> $logfile 2>&1
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117 |
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118 | # do filling of aux data
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119 | for date in ${dates[@]}
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120 | do
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121 | auxdir=$auxdata/$date
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122 | runnumber=`echo $date | sed -e 's/\///g'`
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123 |
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124 | # get file numbers from DB
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125 | # but only for not-corrupted files
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126 | query="SELECT fRunID from RunInfo WHERE fNight="$runnumber" AND fFitsFileErrors=0 "
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127 | # only runs which are not yet filled
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128 | if [ "$doupdate" = "no" ]
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129 | then
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130 | query=$query" AND ISNULL(fRightAscension) "
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131 | fi
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132 | printprocesslog "DEBUG get filenumbers from DB: QUERY: "$query
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133 | filenumbers=( `sendquery $query` )
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134 | # proceed only if there are files available
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135 | if [ ${#filenumbers} -eq 0 ]
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136 | then
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137 | printprocesslog "INFO No files found in the DB for night "$date
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138 | continue
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139 | fi
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140 |
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141 | # check if aux files are available from that night
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142 | if ! [ -d $auxdir ]
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143 | then
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144 | printprocesslog "INFO no data available in "$auxdir
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145 | continue
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146 | else
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147 | printprocesslog "INFO processing files in "$auxdir
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148 | fi
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149 |
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150 | # get daily fits files
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151 | trackingfile=$auxdir/$runnumber.DRIVE_CONTROL_TRACKING_POSITION.fits
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152 | if ! [ -e $trackingfile ]
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153 | then
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154 | printprocesslog "WARN "$trackingfile" not found."
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155 | else
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156 | tracknumerrors=`fverify $trackingfile 2>/dev/null | grep -o '[0-9][ ]error(s)' | grep -E -o '[0-9]'`
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157 | if [ $tracknumerrors -gt 0 ]
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158 | then
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159 | printprocesslog "WARN for $trackingfile fverify returned "$tracknumerrors" error(s)."
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160 | fi
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161 | fi
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162 |
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163 | sourceposfile=$auxdir/$runnumber.DRIVE_CONTROL_SOURCE_POSITION.fits
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164 | if ! [ -e $sourceposfile ]
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165 | then
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166 | printprocesslog "WARN "$sourceposfile" not found."
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167 | else
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168 | sourceposnumerrors=`fverify $sourceposfile 2>/dev/null | grep -o '[0-9][ ]error(s)' | grep -E -o '[0-9]'`
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169 | if [ $sourceposnumerrors -gt 0 ]
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170 | then
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171 | printprocesslog "WARN for $sourceposfile fverify returned "$sourceposnumerrors" error(s)."
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172 | fi
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173 | sourceposfiletstarti=`$factpath/fitsdump -h $sourceposfile 2>/dev/null | grep 'TSTARTI' | grep -E -o '[0-9]{5}'`
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174 | sourceposfiletstartf=`$factpath/fitsdump -h $sourceposfile 2>/dev/null | grep 'TSTARTF' | grep -E -o '0[.][0-9]+'`
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175 | if [ $sourceposfiletstarti -gt 30000 ]
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176 | then
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177 | sourceposfiletstart=`echo " $sourceposfiletstarti + $sourceposfiletstartf - 40587 " | bc -l`
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178 | else
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179 | sourceposfiletstart=`echo " $sourceposfiletstarti + $sourceposfiletstartf " | bc -l`
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180 | fi
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181 | #echo "tstart: "$sourceposfiletstart
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182 | fi
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183 |
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184 | triggerratefile=$auxdir/$runnumber.FTM_CONTROL_TRIGGER_RATES.fits
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185 | if ! [ -e $triggerratefile ]
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186 | then
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187 | printprocesslog "WARN "$triggerratefile" not found."
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188 | else
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189 | trignumerrors=`fverify $triggerratefile 2>/dev/null | grep -o '[0-9][ ]error(s)' | grep -E -o '[0-9]'`
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190 | if [ $trignumerrors -gt 0 ]
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191 | then
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192 | printprocesslog "WARN for $triggerratefile fverify returned "$trignumerrors" error(s)."
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193 | fi
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194 | fi
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195 |
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196 | thresholdfile=$auxdir/$runnumber.FTM_CONTROL_STATIC_DATA.fits
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197 | if ! [ -e $thresholdfile ]
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198 | then
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199 | printprocesslog "WARN "$thresholdfile" not found."
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200 | else
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201 | treshnumerrors=`fverify $thresholdfile 2>/dev/null | grep -o '[0-9][ ]error(s)' | grep -E -o '[0-9]'`
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202 | if [ $treshnumerrors -gt 0 ]
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203 | then
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204 | printprocesslog "WARN for $thresholdfile fverify returned "$treshnumerrors" error(s)."
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205 | fi
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206 | fi
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207 |
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208 | biasvoltagefile=$auxdir/$runnumber.BIAS_CONTROL_VOLTAGE.fits
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209 | if ! [ -e $biasvoltagefile ]
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210 | then
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211 | printprocesslog "WARN "$biasvoltagefile" not found."
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212 | else
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213 | biasnumerrors=`fverify $biasvoltagefile 2>/dev/null | grep -o '[0-9][ ]error(s)' | grep -E -o '[0-9]'`
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214 | if [ $biasnumerrors -gt 0 ]
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215 | then
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216 | printprocesslog "WARN for $biasvoltagefile fverify returned "$biasnumerrors" error(s)."
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217 | fi
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218 | fi
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219 |
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220 | # fill auxiliary information for files
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221 | for filenum in ${filenumbers[@]}
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222 | do
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223 | printprocesslog "INFO processing file number "$runnumber"_"`printf %03d $filenum`
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224 | echo `date`": processing file number "$runnumber"_"`printf %03d $filenum` >> $logfile 2>&1
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225 | # get information from rawfile
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226 | rawfile=$ziprawdata/$date/$runnumber"_"`printf %03d $filenum`.fits.fz
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227 | if ! [ -e $rawfile ]
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228 | then
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229 | printprocesslog "ERROR: "$rawfile" not found."
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230 | continue
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231 | fi
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232 | #checkfitsfile=`fverify $rawfile 2>/dev/null | grep '0 error(s)'`
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233 | #if [ "$checkfitsfile" == "" ]
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234 | #then
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235 | # numfitserrors=1
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236 | # printprocesslog "WARN: "$rawfile" probably corrupted."
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237 | # continue
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238 | #fi
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239 | runtype=`$factpath/fitsdump -h $rawfile 2>/dev/null | grep RUNTYPE | grep -E -o "['][a-z-]+[']" | sed -e "s/'//g"`
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240 | mjdrefraw=`$factpath/fitsdump -h $rawfile 2>/dev/null | grep 'MJDREF' | grep -E -o '[0-9]{5}'`
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241 | tstarti=`$factpath/fitsdump -h $rawfile 2>/dev/null | grep 'TSTARTI' | grep -E -o '[0-9]{5}'`
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242 | tstartf=`$factpath/fitsdump -h $rawfile 2>/dev/null | grep 'TSTARTF' | grep -E -o '0[.][0-9]+'`
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243 | tstopi=`$factpath/fitsdump -h $rawfile 2>/dev/null | grep 'TSTOPI' | grep -E -o '[0-9]{5}'`
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244 | tstopf=`$factpath/fitsdump -h $rawfile 2>/dev/null | grep 'TSTOPF' | grep -E -o '0[.][0-9]+'`
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245 | if [ "$tstarti" == "" ] || [ "$tstopi" == "" ] || [ "$tstartf" == "" ] || [ "$tstopf" == "" ]
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246 | then
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247 | printprocesslog "WARN: "$rawfile": one of the following keywords is empty or 0: TSTARTI TSTARTF TSTOPI TSTOPF "
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248 | continue
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249 | fi
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250 | # assuming that at least TSTARTI and TSTOPI are consistent
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251 | #echo $rawfile
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252 | #echo $tstarti
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253 | #echo $tstopi
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254 | #echo $tstartf
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255 | #echo $tstopf
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256 | if [ $tstarti -gt 30000 ]
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257 | then
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258 | tstart=`echo " $tstarti + $tstartf - 40587 " | bc -l`
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259 | tstart2=`echo " $tstarti + $tstartf - 40587 - 0.00011574 " | bc -l` # 10 sec
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260 | #tstart2=`echo " $tstarti + $tstartf - 40587 - 0.000023148 " | bc -l` # 2 sec
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261 | tstop=`echo " $tstopi + $tstopf - 40587 " | bc -l`
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262 | else
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263 | tstart=`echo " $tstarti + $tstartf " | bc -l`
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264 | tstart2=`echo " $tstarti + $tstartf - 0.00011574 " | bc -l` # 10 sec
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265 | #tstart2=`echo " $tstarti + $tstartf - 0.000023148 " | bc -l` # 2 sec
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266 | tstop=`echo " $tstopi + $tstopf " | bc -l`
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267 | fi
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268 | #echo $tstart
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269 | #echo $tstop
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270 | #if [ $runnumber -eq 20111123 ]
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271 | #then
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272 | # # add mjdref for days were aux files were inconsistent
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273 | # tstart=`echo " $tstart + $mjdref " | bc -l`
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274 | # tstart2=`echo " $tstart2 + $mjdref " | bc -l`
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275 | # tstop=`echo " $tstop + $mjdref " | bc -l`
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276 | #fi
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277 |
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278 | # get information from source_pos file
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279 | if [ -e $sourceposfile ] && [ $sourceposnumerrors -eq 0 ]
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280 | then
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281 | sourcename=`$factpath/fitsdump ${sourceposfile} -c Time -c Name --filter='[1]<'${tstop}' && [1]>'${sourceposfiletstart} 2>/dev/null | tail -1 2>&1 | grep -o -E "['][a-zA-Z0-9\ \.\+\-]+[']" | sed -e "s/'//g"`
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282 | if [ "$sourcename" == "" ]
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283 | then
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284 | printprocesslog "INFO couldn't get sourcename ("$sourcename") from "$sourceposfile" for "$runnumber"_"$filenum
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285 | else
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286 | query="SELECT fSourceKey FROM Source WHERE fSourceName='"$sourcename"'"
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287 | sourcekey=`sendquery`
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288 | if [ "$sourcename" == "" ]
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289 | then
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290 | printprocesslog "WARN couldn't get sourcekey for source "$sourcename" from DB for "$runnumber"_"$filenum
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291 | fi
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292 | fi
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293 | fi
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294 |
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295 | # build query to update runinfo in DB
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296 | query="UPDATE RunInfo SET "
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297 | # fill source key only if available
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298 | if ! [ "$sourcekey" = "" ]
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299 | then
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300 | query=$query" fSourceKey="$sourcekey", "
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301 | else
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302 | query=$query" fSourceKey=NULL, "
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303 | fi
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304 |
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305 | # get information from tracking
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306 | if [ -e $trackingfile ] && [ $tracknumerrors -eq 0 ]
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307 | then
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308 | # RA
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309 | getfitsstatistics $trackingfile "Ra" $tstart $tstop
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310 | if [ "$min" == "$max" ] && [ $good -gt 0 ]
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311 | then
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312 | query=$query" fRightAscension="$mean
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313 | else
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314 | query=$query" fRightAscension=NULL"
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315 | if [ $good -gt 0 ]
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316 | then
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317 | printprocesslog "WARN for $rawfile RA changes within run (min: "$min", max: "$max")."
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318 | fi
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319 | fi
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320 | # Declination
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321 | getfitsstatistics $trackingfile "Dec" $tstart $tstop
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322 | if [ "$decmin" == "$decmax" ] && [ $good -gt 0 ]
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323 | then
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324 | query=$query", fDeclination="$mean
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325 | else
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326 | query=$query", fDeclination=NULL"
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327 | if [ $good -gt 0 ]
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328 | then
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329 | printprocesslog "WARN for $rawfile declination changes within run (min: "$min", max: "$max")."
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330 | fi
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331 | fi
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332 | # Zd
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333 | getfitsstatistics $trackingfile "Zd" $tstart $tstop
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334 | if [ $good -gt 0 ]
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335 | then
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336 | query=$query", fZenithDistanceMin="$min
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337 | query=$query", fZenithDistanceMean="$mean
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338 | query=$query", fZenithDistanceMax="$max
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339 | else
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340 | query=$query", fZenithDistanceMin=NULL"
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341 | query=$query", fZenithDistanceMean=NULL"
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342 | query=$query", fZenithDistanceMax=NULL"
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343 | fi
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344 | # Az
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345 | getfitsstatistics $trackingfile "Az" $tstart $tstop
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346 | if [ $good -gt 0 ]
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347 | then
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348 | query=$query", fAzimuthMin="$min
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349 | query=$query", fAzimuthMean="$mean
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350 | query=$query", fAzimuthMax="$max
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351 | else
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352 | query=$query", fAzimuthMin=NULL"
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353 | query=$query", fAzimuthMean=NULL"
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354 | query=$query", fAzimuthMax=NULL"
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355 | fi
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356 | else
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357 | query=$query" fRightAscension=NULL"
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358 | query=$query", fDeclination=NULL"
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359 | query=$query", fZenithDistanceMin=NULL"
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360 | query=$query", fZenithDistanceMean=NULL"
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361 | query=$query", fZenithDistanceMax=NULL"
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362 | query=$query", fAzimuthMin=NULL"
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363 | query=$query", fAzimuthMean=NULL"
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364 | query=$query", fAzimuthMax=NULL"
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365 | fi
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366 |
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367 | # get information from trigger
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368 | if [ -e $triggerratefile ] && [ $trignumerrors -eq 0 ]
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369 | then
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370 | #echo " $triggerratefile TriggerRate $tstart $tstop"
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371 | getfitsstatistics $triggerratefile "TriggerRate" $tstart $tstop
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372 | # if [ "$mjdreftrig" == "" ]
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373 | # then
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374 | # ratemin=`ftcopy $triggerratefile'[Time> '${tstart}' && Time< '${tstop}' && TriggerRate!=-1][col TriggerRate;Time]' - | ftcopy -'[col TriggerRate]' - | ftstat - | grep 'min' | grep -E -o '[0-9]+[.]?[0-9]*'`
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375 | # ratemax=`ftcopy $triggerratefile'[Time> '${tstart}' && Time< '${tstop}' && TriggerRate!=-1][col TriggerRate;Time]' - | ftcopy -'[col TriggerRate]' - | ftstat - | grep 'max' | grep -E -o '[0-9]+[.]?[0-9]*'`
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376 | # ratemean=`ftcopy $triggerratefile'[Time> '${tstart}' && Time< '${tstop}' && TriggerRate!=-1][col TriggerRate;Time]' - | ftcopy -'[col TriggerRate]' - | ftstat - | grep 'mean' | grep -E -o '[0-9]+[.]?[0-9]*'`
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377 | # ratemedian=`ftcopy $triggerratefile'[Time> '${tstart}' && Time< '${tstop}' && TriggerRate!=-1][col TriggerRate;Time]' - | ftcopy -'[col TriggerRate]' - | ftstat - | grep 'median' | grep -E -o '[0-9]+[.]?[0-9]*'`
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378 | # else
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379 | # ratemin=`ftcopy $triggerratefile'[Time> '${tstart}' && Time< '${tstop}' && TriggerRate!=-1][col TriggerRate;Time]' - | ftcopy -'[col TriggerRate]' - | ftstat - | grep 'min' | grep -E -o '[0-9]+[.]?[0-9]*'`
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380 | # ratemax=`ftcopy $triggerratefile'[Time> '${tstart}' && Time< '${tstop}' && TriggerRate!=-1][col TriggerRate;Time]' - | ftcopy -'[col TriggerRate]' - | ftstat - | grep 'max' | grep -E -o '[0-9]+[.]?[0-9]*'`
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381 | # ratemean=`ftcopy $triggerratefile'[Time> '${tstart}' && Time< '${tstop}' && TriggerRate!=-1][col TriggerRate;Time]' - | ftcopy -'[col TriggerRate]' - | ftstat - | grep 'mean' | grep -E -o '[0-9]+[.]?[0-9]*'`
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382 | # ratemedian=`ftcopy $triggerratefile'[Time> '${tstart}' && Time< '${tstop}' && TriggerRate!=-1][col TriggerRate;Time]' - | ftcopy -'[col TriggerRate]' - | ftstat - | grep 'median' | grep -E -o '[0-9]+[.]?[0-9]*'`
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383 | # fi
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384 | if [ $good -gt 0 ]
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385 | then
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386 | query=$query", fTriggerRateMedian="$median
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387 | else
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388 | query=$query", fTriggerRateMedian=NULL"
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389 | fi
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390 | else
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391 | query=$query", fTriggerRateMedian=NULL"
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392 | fi
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393 |
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394 | # get information from thresholds
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395 | if [ -e $thresholdfile ] && [ $treshnumerrors -eq 0 ]
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396 | then
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397 | getfitsstatistics $thresholdfile "PatchThresh" $tstart $tstop
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398 | if [ $good -eq 0 ]
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399 | then
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400 | getfitsstatistics $thresholdfile "PatchThresh" $tstart2 $tstop
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401 | fi
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402 | if [ $good -gt 0 ]
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403 | then
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404 | query=$query", fThresholdMedian="$median
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405 | else
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406 | query=$query", fThresholdMedian=NULL"
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407 | fi
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408 | else
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409 | query=$query", fThresholdMedian=NULL"
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410 | fi
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411 |
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412 | # get information from bias: U
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413 | if [ -e $biasvoltagefile ] && [ $biasnumerrors -eq 0 ]
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414 | then
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415 | if [ $runnumber -gt 20120324 ]
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416 | then
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417 | value="Uout"
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418 | else
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419 | value="U"
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420 | fi
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421 | getfitsstatistics $biasvoltagefile $value $tstart $tstop
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422 | if [ $good -eq 0 ]
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423 | then
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424 | getfitsstatistics $biasvoltagefile $value $tstart2 $tstop
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425 | fi
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426 | if [ $good -gt 0 ]
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427 | then
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428 | query=$query", fBiasVoltageMedian="$median
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429 | else
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430 | query=$query", fBiasVoltageMedian=NULL"
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431 | fi
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432 | else
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433 | query=$query", fBiasVoltageMedian=NULL"
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434 | fi
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435 |
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436 | # add where condition
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437 | query=$query" WHERE fNight="$runnumber" AND fRunID="$filenum
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438 | #echo $query
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439 |
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440 | # send query to DB
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441 | sendquery >/dev/null
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442 | done
|
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443 | done
|
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444 |
|
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445 | finish
|
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446 |
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447 |
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