source: trunk/DataCheck/Processing/FillAuxData.sh@ 13040

Last change on this file since 13040 was 13040, checked in by Daniela Dorner, 13 years ago
moved FillAuxData.sh to processing directory
  • Property svn:executable set to *
File size: 14.5 KB
Line 
1#!/bin/bash
2
3# missing:
4# vferify of files
5# only treat file if it is there
6
7# mjd of 1970-01-01
8# needed in this script as for 1 day the mjd in the aux files are inconsistent
9# mjdref=40587
10
11# known:
12# 2011/11/22 MJDREF in DRIVE empty, Time > 55000
13# 2011/11/23 MJDREF in DRIVE not empty, Time > 55000
14# 2011/11/24 MJDREF in DRIVE not empty, Time > 15000
15# raw files
16# 2011/11/21 no MJDREF
17# 2011/11/22 MJDREF
18# further things: https://www.fact-project.org/logbook/showthread.php?tid=67
19
20# trigger rate has as first value -1, but with using the median it should be fine
21
22# option
23doupdate="yes" # update all entries (needed when new fields have been added)
24doupdate="no" # fill only entries which are not yet existing (default)
25
26source `dirname $0`/Sourcefile.sh
27printprocesslog "INFO starting $0 with option doupdate="$doupdate
28
29logfile=$runlogpath"/FillAuxLP-"$datetime".log"
30date >> $logfile
31
32function getfitsstatistics()
33{
34 # $1 filename
35 # $2 colname
36 # $3 tstart
37 # $4 tstop
38 good=
39 min=
40 mean=
41 median=
42 max=
43 tmpfile=`dirname $0`/`basename $1`.tmp
44 echo "ftcopy $1'[col Time]' - | ftstat - | grep 'mean' | grep -E -o [0-9]+[.] | sed -e 's/[.]//g'" >> $logfile
45 timefromfile=`ftcopy $1'[col Time]' - 2>>$logfile | ftstat - 2>>$logfile | grep 'mean' | grep -E -o [0-9]+[.] | sed -e 's/[.]//g'`
46 if [ $timefromfile -gt 30000 ]
47 then
48 echo "ftcopy $1'[Time - 40587> '${3}' && Time - 40587< '${4}' ][col '${2}';Time]' - | ftcopy -'[col '${2}']' - | ftstat -" >> $logfile
49 #ftcopy $1'[Time - 40587> '${3}' && Time - 40587< '${4}' ][col '${2}';Time]' - | ftcopy -'[col '${2}']' - | ftstat -
50 ftcopy $1'[Time - 40587> '${3}' && Time - 40587< '${4}' ][col '${2}';Time]' - 2>>$logfile | ftcopy -'[col '${2}']' - 2>>$logfile | ftstat - 2>>$logfile > $tmpfile
51 else
52 echo "ftcopy $1'[Time> '${3}' && Time< '${4}' ][col '${2}';Time]' - | ftcopy -'[col '${2}']' - | ftstat -" >> $logfile
53 #ftcopy $1'[Time> '${3}' && Time< '${4}' ][col '${2}';Time]' - | ftcopy -'[col '${2}']' - | ftstat -
54 ftcopy $1'[Time> '${3}' && Time< '${4}' ][col '${2}';Time]' - 2>>$logfile | ftcopy -'[col '${2}']' - 2>>$logfile | ftstat - 2>>$logfile > $tmpfile
55 fi
56 good=`cat $tmpfile | grep 'good' | grep -E -o '[-]?[0-9]+[.]?[0-9]*'`
57 min=`cat $tmpfile | grep 'min' | grep -E -o '[-]?[0-9]+[.]?[0-9]*'`
58 mean=`cat $tmpfile | grep 'mean' | grep -E -o '[-]?[0-9]+[.]?[0-9]*'`
59 median=`cat $tmpfile | grep 'median' | grep -E -o '[-]?[0-9]+[.]?[0-9]*'`
60 max=`cat $tmpfile | grep 'max' | grep -E -o '[-]?[0-9]+[.]?[0-9]*'`
61 if [ "$good" = "" ]
62 then
63 printprocesslog "WARN couldn't get statistics from file $1 for run $date $file"
64 rm $tmpfile
65 finish
66 fi
67 #echo "good: "$good
68 #echo "min: "$min
69 #echo "max: "$max
70 #echo "mean: "$max
71 #echo "median: "$max
72 rm $tmpfile
73}
74
75# setup to use ftools
76source $HEADAS/headas-init.sh
77
78# check if software is available
79if ! ls $factpath/fitsdump >/dev/null 2>&1
80then
81 printprocesslog "ERROR "$factpath"/fitsdump is not available."
82 finish
83fi
84
85
86# get last 3 nights
87dates=( `date +%Y/%m/%d --date="-12hour"` `date +%Y/%m/%d --date="-36hour"` `date +%Y/%m/%d --date="-60hour"` )
88#dates=( `find $ziprawdata -mindepth 3 -type d | sort | sed "s/\${ziprawdata_for_sed}//g" | sed -e 's/^\///'` ) #all available dates in /loc_data/zipraw
89printprocesslog "INFO processing the following night(s): "${dates[@]}
90echo `date`": processing the following night(s): "${dates[@]} >> $logfile 2>&1
91
92# do filling of aux data
93for date in ${dates[@]}
94do
95 auxdir=$auxdata/$date
96 runnumber=`echo $date | sed -e 's/\///g'`
97
98 # check if aux files are available from that night
99 if ! [ -d $auxdir ]
100 then
101 printprocesslog "INFO no data available in "$auxdir
102 continue
103 else
104 printprocesslog "INFO processing files in "$auxdir
105 fi
106
107 # get file numbers from DB
108 # but only for not-corrupted files
109 query="SELECT fRunID from RunInfo WHERE fNight="$runnumber" AND fFitsFileErrors=0 "
110 printprocesslog "DEBUG get filenumbers from DB: QUERY: "$query
111 filenumbers=( `sendquery $query` )
112 if [ ${#filenumbers} -eq 0 ]
113 then
114 printprocesslog "INFO No files found in the DB for night "$date
115 continue
116 fi
117
118 # get daily fits files
119 trackingfile=$auxdir/$runnumber.DRIVE_CONTROL_TRACKING_POSITION.fits
120 if ! [ -e $trackingfile ]
121 then
122 printprocesslog "WARN "$trackingfile" not found."
123 else
124 tracknumerrors=`fverify $trackingfile 2>/dev/null | grep -o '[0-9][ ]error(s)' | grep -E -o '[0-9]'`
125 if [ $tracknumerrors -gt 0 ]
126 then
127 printprocesslog "WARN for $trackingfile fverify returned "$tracknumerrors" error(s)."
128 fi
129 fi
130
131 triggerratefile=$auxdir/$runnumber.FTM_CONTROL_TRIGGER_RATES.fits
132 if ! [ -e $triggerratefile ]
133 then
134 printprocesslog "WARN "$triggerratefile" not found."
135 else
136 trignumerrors=`fverify $triggerratefile 2>/dev/null | grep -o '[0-9][ ]error(s)' | grep -E -o '[0-9]'`
137 if [ $trignumerrors -gt 0 ]
138 then
139 printprocesslog "WARN for $triggerratefile fverify returned "$trignumerrors" error(s)."
140 fi
141 fi
142
143 thresholdfile=$auxdir/$runnumber.FTM_CONTROL_STATIC_DATA.fits
144 if ! [ -e $thresholdfile ]
145 then
146 printprocesslog "WARN "$thresholdfile" not found."
147 else
148 treshnumerrors=`fverify $thresholdfile 2>/dev/null | grep -o '[0-9][ ]error(s)' | grep -E -o '[0-9]'`
149 if [ $treshnumerrors -gt 0 ]
150 then
151 printprocesslog "WARN for $thresholdfile fverify returned "$treshnumerrors" error(s)."
152 fi
153 fi
154
155 biasvoltagefile=$auxdir/$runnumber.BIAS_CONTROL_VOLTAGE.fits
156 if ! [ -e $biasvoltagefile ]
157 then
158 printprocesslog "WARN "$biasvoltagefile" not found."
159 else
160 biasnumerrors=`fverify $biasvoltagefile 2>/dev/null | grep -o '[0-9][ ]error(s)' | grep -E -o '[0-9]'`
161 if [ $biasnumerrors -gt 0 ]
162 then
163 printprocesslog "WARN for $biasvoltagefile fverify returned "$biasnumerrors" error(s)."
164 fi
165 fi
166
167 # fill auxiliary information for files
168 for filenum in ${filenumbers[@]}
169 do
170 printprocesslog "INFO processing file number "$runnumber"_"`printf %03d $filenum`
171 echo `date`": processing file number "$runnumber"_"`printf %03d $filenum` >> $logfile 2>&1
172 # get information from rawfile
173 rawfile=$ziprawdata/$date/$runnumber"_"`printf %03d $filenum`.fits.gz
174 if ! [ -e $rawfile ]
175 then
176 printprocesslog "ERROR: "$rawfile" not found."
177 continue
178 fi
179 #checkfitsfile=`fverify $rawfile 2>/dev/null | grep '0 error(s)'`
180 #if [ "$checkfitsfile" == "" ]
181 #then
182 # numfitserrors=1
183 # printprocesslog "WARN: "$rawfile" probably corrupted."
184 # continue
185 #fi
186 runtype=`$factpath/fitsdump -h -t Events $rawfile 2>/dev/null | grep RUNTYPE | grep -E -o "['][a-z-]+[']" | sed -e "s/'//g"`
187 mjdrefraw=`$factpath/fitsdump -h -t Events $rawfile 2>/dev/null | grep 'MJDREF' | grep -E -o '[0-9]{5}'`
188 tstarti=`$factpath/fitsdump -h -t Events $rawfile 2>/dev/null | grep 'TSTARTI' | grep -E -o '[0-9]{5}'`
189 tstartf=`$factpath/fitsdump -h -t Events $rawfile 2>/dev/null | grep 'TSTARTF' | grep -E -o '0[.][0-9]+'`
190 tstopi=`$factpath/fitsdump -h -t Events $rawfile 2>/dev/null | grep 'TSTOPI' | grep -E -o '[0-9]{5}'`
191 tstopf=`$factpath/fitsdump -h -t Events $rawfile 2>/dev/null | grep 'TSTOPF' | grep -E -o '0[.][0-9]+'`
192 if [ "$tstarti" == "" ] || [ "$tstopi" == "" ] || [ "$tstartf" == "" ] || [ "$tstopf" == "" ]
193 then
194 printprocesslog "WARN: "$rawfile": one of the following keywords is empty or 0: TSTARTI TSTARTF TSTOPI TSTOPF "
195 continue
196 fi
197 # assuming that at least TSTARTI and TSTOPI are consistent
198 #echo $rawfile
199 #echo $tstarti
200 #echo $tstopi
201 #echo $tstartf
202 #echo $tstopf
203 if [ $tstarti -gt 30000 ]
204 then
205 tstart=`echo " $tstarti + $tstartf - 40587 " | bc -l`
206 tstart2=`echo " $tstarti + $tstartf - 40587 - 0.00011574 " | bc -l` # 10 sec
207 #tstart2=`echo " $tstarti + $tstartf - 40587 - 0.000023148 " | bc -l` # 2 sec
208 tstop=`echo " $tstopi + $tstopf - 40587 " | bc -l`
209 else
210 tstart=`echo " $tstarti + $tstartf " | bc -l`
211 tstart2=`echo " $tstarti + $tstartf - 0.00011574 " | bc -l` # 10 sec
212 #tstart2=`echo " $tstarti + $tstartf - 0.000023148 " | bc -l` # 2 sec
213 tstop=`echo " $tstopi + $tstopf " | bc -l`
214 fi
215 #echo $tstart
216 #echo $tstop
217 #if [ $runnumber -eq 20111123 ]
218 #then
219 # # add mjdref for days were aux files were inconsistent
220 # tstart=`echo " $tstart + $mjdref " | bc -l`
221 # tstart2=`echo " $tstart2 + $mjdref " | bc -l`
222 # tstop=`echo " $tstop + $mjdref " | bc -l`
223 #fi
224
225 # build query to update runinfo in DB
226 query="UPDATE RunInfo SET "
227
228 # get information from tracking
229 if [ -e $trackingfile ] && [ $tracknumerrors -eq 0 ]
230 then
231 # RA
232 getfitsstatistics $trackingfile "Ra" $tstart $tstop
233 if [ "$min" == "$max" ] && [ $good -gt 0 ]
234 then
235 query=$query" fRightAscension="$mean
236 else
237 query=$query" fRightAscension=NULL"
238 if [ $good -gt 0 ]
239 then
240 printprocesslog "WARN for $rawfile RA changes within run (min: "$min", max: "$max")."
241 fi
242 fi
243 # Declination
244 getfitsstatistics $trackingfile "Dec" $tstart $tstop
245 if [ "$decmin" == "$decmax" ] && [ $good -gt 0 ]
246 then
247 query=$query", fDeclination="$mean
248 else
249 query=$query", fDeclination=NULL"
250 if [ $good -gt 0 ]
251 then
252 printprocesslog "WARN for $rawfile declination changes within run (min: "$min", max: "$max")."
253 fi
254 fi
255 # Zd
256 getfitsstatistics $trackingfile "Zd" $tstart $tstop
257 if [ $good -gt 0 ]
258 then
259 query=$query", fZenithDistanceMin="$min
260 query=$query", fZenithDistanceMean="$mean
261 query=$query", fZenithDistanceMax="$max
262 else
263 query=$query", fZenithDistanceMin=NULL"
264 query=$query", fZenithDistanceMean=NULL"
265 query=$query", fZenithDistanceMax=NULL"
266 fi
267 # Az
268 getfitsstatistics $trackingfile "Az" $tstart $tstop
269 if [ $good -gt 0 ]
270 then
271 query=$query", fAzimuthMin="$min
272 query=$query", fAzimuthMean="$mean
273 query=$query", fAzimuthMax="$max
274 else
275 query=$query", fAzimuthMin=NULL"
276 query=$query", fAzimuthMean=NULL"
277 query=$query", fAzimuthMax=NULL"
278 fi
279 else
280 query=$query" fRightAscension=NULL"
281 query=$query", fDeclination=NULL"
282 query=$query", fZenithDistanceMin=NULL"
283 query=$query", fZenithDistanceMean=NULL"
284 query=$query", fZenithDistanceMax=NULL"
285 query=$query", fAzimuthMin=NULL"
286 query=$query", fAzimuthMean=NULL"
287 query=$query", fAzimuthMax=NULL"
288 fi
289
290 # get information from trigger
291 if [ -e $triggerratefile ] && [ $trignumerrors -eq 0 ]
292 then
293 #echo " $triggerratefile TriggerRate $tstart $tstop"
294 getfitsstatistics $triggerratefile "TriggerRate" $tstart $tstop
295# if [ "$mjdreftrig" == "" ]
296# then
297# ratemin=`ftcopy $triggerratefile'[Time> '${tstart}' && Time< '${tstop}' && TriggerRate!=-1][col TriggerRate;Time]' - | ftcopy -'[col TriggerRate]' - | ftstat - | grep 'min' | grep -E -o '[0-9]+[.]?[0-9]*'`
298# ratemax=`ftcopy $triggerratefile'[Time> '${tstart}' && Time< '${tstop}' && TriggerRate!=-1][col TriggerRate;Time]' - | ftcopy -'[col TriggerRate]' - | ftstat - | grep 'max' | grep -E -o '[0-9]+[.]?[0-9]*'`
299# ratemean=`ftcopy $triggerratefile'[Time> '${tstart}' && Time< '${tstop}' && TriggerRate!=-1][col TriggerRate;Time]' - | ftcopy -'[col TriggerRate]' - | ftstat - | grep 'mean' | grep -E -o '[0-9]+[.]?[0-9]*'`
300# ratemedian=`ftcopy $triggerratefile'[Time> '${tstart}' && Time< '${tstop}' && TriggerRate!=-1][col TriggerRate;Time]' - | ftcopy -'[col TriggerRate]' - | ftstat - | grep 'median' | grep -E -o '[0-9]+[.]?[0-9]*'`
301# else
302# ratemin=`ftcopy $triggerratefile'[Time> '${tstart}' && Time< '${tstop}' && TriggerRate!=-1][col TriggerRate;Time]' - | ftcopy -'[col TriggerRate]' - | ftstat - | grep 'min' | grep -E -o '[0-9]+[.]?[0-9]*'`
303# ratemax=`ftcopy $triggerratefile'[Time> '${tstart}' && Time< '${tstop}' && TriggerRate!=-1][col TriggerRate;Time]' - | ftcopy -'[col TriggerRate]' - | ftstat - | grep 'max' | grep -E -o '[0-9]+[.]?[0-9]*'`
304# ratemean=`ftcopy $triggerratefile'[Time> '${tstart}' && Time< '${tstop}' && TriggerRate!=-1][col TriggerRate;Time]' - | ftcopy -'[col TriggerRate]' - | ftstat - | grep 'mean' | grep -E -o '[0-9]+[.]?[0-9]*'`
305# ratemedian=`ftcopy $triggerratefile'[Time> '${tstart}' && Time< '${tstop}' && TriggerRate!=-1][col TriggerRate;Time]' - | ftcopy -'[col TriggerRate]' - | ftstat - | grep 'median' | grep -E -o '[0-9]+[.]?[0-9]*'`
306# fi
307 if [ $good -gt 0 ]
308 then
309 query=$query", fTriggerRateMedian="$median
310 else
311 query=$query", fTriggerRateMedian=NULL"
312 fi
313 else
314 query=$query", fTriggerRateMedian=NULL"
315 fi
316
317 # get information from thresholds
318 if [ -e $thresholdfile ] && [ $treshnumerrors -eq 0 ]
319 then
320 getfitsstatistics $thresholdfile "PatchThresh" $tstart $tstop
321 if [ $good -eq 0 ]
322 then
323 getfitsstatistics $thresholdfile "PatchThresh" $tstart2 $tstop
324 fi
325 if [ $good -gt 0 ]
326 then
327 query=$query", fThresholdMedian="$median
328 else
329 query=$query", fThresholdMedian=NULL"
330 fi
331 else
332 query=$query", fThresholdMedian=NULL"
333 fi
334
335 # get information from bias: U
336 if [ -e $biasvoltagefile ] && [ $biasnumerrors -eq 0 ]
337 then
338 getfitsstatistics $biasvoltagefile "U" $tstart $tstop
339 if [ $good -eq 0 ]
340 then
341 getfitsstatistics $biasvoltagefile "U" $tstart2 $tstop
342 fi
343 if [ $good -gt 0 ]
344 then
345 query=$query", fBiasVoltageMedian="$median
346 else
347 query=$query", fBiasVoltageMedian=NULL"
348 fi
349 else
350 query=$query", fBiasVoltageMedian=NULL"
351 fi
352
353 # add where condition
354 query=$query" WHERE fNight="$runnumber" AND fRunID="$filenum
355
356 # send query to DB
357 sendquery >/dev/null
358 done
359done
360
361finish
362
363
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