| 1 | #!/bin/bash
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| 2 |
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| 3 | # missing:
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| 4 | # vferify of files
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| 5 | # only treat file if it is there
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| 6 |
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| 7 | # mjd of 1970-01-01
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| 8 | # needed in this script as for 1 day the mjd in the aux files are inconsistent
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| 9 | # mjdref=40587
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| 10 |
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| 11 | # known:
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| 12 | # 2011/11/22 MJDREF in DRIVE empty, Time > 55000
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| 13 | # 2011/11/23 MJDREF in DRIVE not empty, Time > 55000
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| 14 | # 2011/11/24 MJDREF in DRIVE not empty, Time > 15000
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| 15 | # raw files
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| 16 | # 2011/11/21 no MJDREF
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| 17 | # 2011/11/22 MJDREF
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| 18 | # further things: https://www.fact-project.org/logbook/showthread.php?tid=67
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| 19 |
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| 20 | # trigger rate has as first value -1, but with using the median it should be fine
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| 21 |
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| 22 | # option
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| 23 | doupdate="yes" # update all entries (needed when new fields have been added)
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| 24 | doupdate="no" # fill only entries which are not yet existing (default)
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| 25 |
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| 26 | source `dirname $0`/../Sourcefile.sh
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| 27 | printprocesslog "INFO starting $0 with option doupdate="$doupdate
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| 28 |
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| 29 | logfile=$runlogpath"/FillAuxLP-"$datetime".log"
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| 30 | date >> $logfile
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| 31 |
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| 32 | function getfitsstatistics()
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| 33 | {
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| 34 | # $1 filename
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| 35 | # $2 colname
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| 36 | # $3 tstart
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| 37 | # $4 tstop
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| 38 | good=
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| 39 | min=
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| 40 | mean=
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| 41 | median=
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| 42 | max=
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| 43 | tmpfile=`dirname $0`/`basename $1`.tmp
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| 44 | echo "ftcopy $1'[col Time]' - | ftstat - | grep 'mean' | grep -E -o [0-9]+[.] | sed -e 's/[.]//g'" >> $logfile
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| 45 | timefromfile=`ftcopy $1'[col Time]' - 2>>$logfile | ftstat - 2>>$logfile | grep 'mean' | grep -E -o [0-9]+[.] | sed -e 's/[.]//g'`
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| 46 | if [ $timefromfile -gt 30000 ]
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| 47 | then
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| 48 | echo "ftcopy $1'[Time - 40587> '${3}' && Time - 40587< '${4}' ][col '${2}';Time]' - | ftcopy -'[col '${2}']' - | ftstat -" >> $logfile
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| 49 | #ftcopy $1'[Time - 40587> '${3}' && Time - 40587< '${4}' ][col '${2}';Time]' - | ftcopy -'[col '${2}']' - | ftstat -
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| 50 | ftcopy $1'[Time - 40587> '${3}' && Time - 40587< '${4}' ][col '${2}';Time]' - 2>>$logfile | ftcopy -'[col '${2}']' - 2>>$logfile | ftstat - 2>>$logfile > $tmpfile
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| 51 | else
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| 52 | echo "ftcopy $1'[Time> '${3}' && Time< '${4}' ][col '${2}';Time]' - | ftcopy -'[col '${2}']' - | ftstat -" >> $logfile
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| 53 | #ftcopy $1'[Time> '${3}' && Time< '${4}' ][col '${2}';Time]' - | ftcopy -'[col '${2}']' - | ftstat -
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| 54 | ftcopy $1'[Time> '${3}' && Time< '${4}' ][col '${2}';Time]' - 2>>$logfile | ftcopy -'[col '${2}']' - 2>>$logfile | ftstat - 2>>$logfile > $tmpfile
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| 55 | fi
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| 56 | good=`cat $tmpfile | grep 'good' | grep -E -o '[-]?[0-9]+[.]?[0-9]*'`
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| 57 | min=`cat $tmpfile | grep 'min' | grep -E -o '[-]?[0-9]+[.]?[0-9]*'`
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| 58 | mean=`cat $tmpfile | grep 'mean' | grep -E -o '[-]?[0-9]+[.]?[0-9]*'`
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| 59 | median=`cat $tmpfile | grep 'median' | grep -E -o '[-]?[0-9]+[.]?[0-9]*'`
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| 60 | max=`cat $tmpfile | grep 'max' | grep -E -o '[-]?[0-9]+[.]?[0-9]*'`
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| 61 | sigma=`cat $tmpfile | grep 'sigma' | grep -E -o '[-]?[0-9]+[.]?[0-9]*'`
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| 62 | if [ "$good" = "" ]
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| 63 | then
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| 64 | printprocesslog "WARN couldn't get statistics from file $1 for run $date $file"
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| 65 | rm $tmpfile
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| 66 | finish
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| 67 | fi
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| 68 | #echo "good: "$good
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| 69 | #echo "min: "$min
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| 70 | #echo "max: "$max
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| 71 | #echo "mean: "$max
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| 72 | #echo "median: "$max
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| 73 | rm $tmpfile
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| 74 | }
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| 75 |
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| 76 | # setup to use ftools
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| 77 | source $HEADAS/headas-init.sh
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| 78 |
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| 79 | # check if software is available
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| 80 | if ! ls $factpath/fitsdump >/dev/null 2>&1
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| 81 | then
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| 82 | printprocesslog "ERROR "$factpath"/fitsdump is not available."
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| 83 | finish
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| 84 | fi
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| 85 |
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| 86 |
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| 87 | # get last 3, 6 or 9 nights
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| 88 | dates=( `date +%Y/%m/%d --date="-12hour"` `date +%Y/%m/%d --date="-36hour"` `date +%Y/%m/%d --date="-60hour"` \
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| 89 | `date +%Y/%m/%d --date="-84hour"` `date +%Y/%m/%d --date="-108hour"` `date +%Y/%m/%d --date="-132hour"` \
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| 90 | # `date +%Y/%m/%d --date="-156hour"` `date +%Y/%m/%d --date="-180hour"` `date +%Y/%m/%d --date="-204hour"` \
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| 91 | )
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| 92 | #dates=( `find $ziprawdata -mindepth 3 -type d | sort | sed "s/\${ziprawdata_for_sed}//g" | sed -e 's/^\///'` ) #all available dates in /loc_data/zipraw
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| 93 | printprocesslog "INFO processing the following night(s): "${dates[@]}
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| 94 | echo `date`": processing the following night(s): "${dates[@]} >> $logfile 2>&1
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| 95 |
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| 96 | # do filling of aux data
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| 97 | for date in ${dates[@]}
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| 98 | do
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| 99 | auxdir=$auxdata/$date
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| 100 | runnumber=`echo $date | sed -e 's/\///g'`
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| 101 |
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| 102 | # check if aux files are available from that night
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| 103 | if ! [ -d $auxdir ]
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| 104 | then
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| 105 | printprocesslog "INFO no data available in "$auxdir
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| 106 | continue
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| 107 | else
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| 108 | printprocesslog "INFO processing files in "$auxdir
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| 109 | fi
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| 110 |
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| 111 | # get file numbers from DB
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| 112 | # but only for not-corrupted files
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| 113 | query="SELECT fRunID from RunInfo WHERE fNight="$runnumber" AND fFitsFileErrors=0 "
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| 114 | printprocesslog "DEBUG get filenumbers from DB: QUERY: "$query
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| 115 | filenumbers=( `sendquery $query` )
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| 116 | if [ ${#filenumbers} -eq 0 ]
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| 117 | then
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| 118 | printprocesslog "INFO No files found in the DB for night "$date
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| 119 | continue
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| 120 | fi
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| 121 |
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| 122 | # get daily fits files
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| 123 | trackingfile=$auxdir/$runnumber.DRIVE_CONTROL_TRACKING_POSITION.fits
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| 124 | if ! [ -e $trackingfile ]
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| 125 | then
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| 126 | printprocesslog "WARN "$trackingfile" not found."
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| 127 | else
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| 128 | tracknumerrors=`fverify $trackingfile 2>/dev/null | grep -o '[0-9][ ]error(s)' | grep -E -o '[0-9]'`
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| 129 | if [ $tracknumerrors -gt 0 ]
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| 130 | then
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| 131 | printprocesslog "WARN for $trackingfile fverify returned "$tracknumerrors" error(s)."
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| 132 | fi
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| 133 | fi
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| 134 |
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| 135 | sourceposfile=$auxdir/$runnumber.DRIVE_CONTROL_SOURCE_POSITION.fits
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| 136 | if ! [ -e $sourceposfile ]
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| 137 | then
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| 138 | printprocesslog "WARN "$sourceposfile" not found."
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| 139 | else
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| 140 | sourceposnumerrors=`fverify $sourceposfile 2>/dev/null | grep -o '[0-9][ ]error(s)' | grep -E -o '[0-9]'`
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| 141 | if [ $sourceposnumerrors -gt 0 ]
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| 142 | then
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| 143 | printprocesslog "WARN for $sourceposfile fverify returned "$sourceposnumerrors" error(s)."
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| 144 | fi
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| 145 | fi
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| 146 |
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| 147 | triggerratefile=$auxdir/$runnumber.FTM_CONTROL_TRIGGER_RATES.fits
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| 148 | if ! [ -e $triggerratefile ]
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| 149 | then
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| 150 | printprocesslog "WARN "$triggerratefile" not found."
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| 151 | else
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| 152 | trignumerrors=`fverify $triggerratefile 2>/dev/null | grep -o '[0-9][ ]error(s)' | grep -E -o '[0-9]'`
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| 153 | if [ $trignumerrors -gt 0 ]
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| 154 | then
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| 155 | printprocesslog "WARN for $triggerratefile fverify returned "$trignumerrors" error(s)."
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| 156 | fi
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| 157 | fi
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| 158 |
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| 159 | thresholdfile=$auxdir/$runnumber.FTM_CONTROL_STATIC_DATA.fits
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| 160 | if ! [ -e $thresholdfile ]
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| 161 | then
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| 162 | printprocesslog "WARN "$thresholdfile" not found."
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| 163 | else
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| 164 | treshnumerrors=`fverify $thresholdfile 2>/dev/null | grep -o '[0-9][ ]error(s)' | grep -E -o '[0-9]'`
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| 165 | if [ $treshnumerrors -gt 0 ]
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| 166 | then
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| 167 | printprocesslog "WARN for $thresholdfile fverify returned "$treshnumerrors" error(s)."
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| 168 | fi
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| 169 | fi
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| 170 |
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| 171 | biasvoltagefile=$auxdir/$runnumber.BIAS_CONTROL_VOLTAGE.fits
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| 172 | if ! [ -e $biasvoltagefile ]
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| 173 | then
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| 174 | printprocesslog "WARN "$biasvoltagefile" not found."
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| 175 | else
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| 176 | biasnumerrors=`fverify $biasvoltagefile 2>/dev/null | grep -o '[0-9][ ]error(s)' | grep -E -o '[0-9]'`
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| 177 | if [ $biasnumerrors -gt 0 ]
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| 178 | then
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| 179 | printprocesslog "WARN for $biasvoltagefile fverify returned "$biasnumerrors" error(s)."
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| 180 | fi
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| 181 | fi
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| 182 |
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| 183 | # fill auxiliary information for files
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| 184 | for filenum in ${filenumbers[@]}
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| 185 | do
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| 186 | printprocesslog "INFO processing file number "$runnumber"_"`printf %03d $filenum`
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| 187 | echo `date`": processing file number "$runnumber"_"`printf %03d $filenum` >> $logfile 2>&1
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| 188 | # get information from rawfile
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| 189 | rawfile=$ziprawdata/$date/$runnumber"_"`printf %03d $filenum`.fits.gz
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| 190 | if ! [ -e $rawfile ]
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| 191 | then
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| 192 | printprocesslog "ERROR: "$rawfile" not found."
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| 193 | continue
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| 194 | fi
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| 195 | #checkfitsfile=`fverify $rawfile 2>/dev/null | grep '0 error(s)'`
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| 196 | #if [ "$checkfitsfile" == "" ]
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| 197 | #then
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| 198 | # numfitserrors=1
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| 199 | # printprocesslog "WARN: "$rawfile" probably corrupted."
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| 200 | # continue
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| 201 | #fi
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| 202 | runtype=`$factpath/fitsdump -h $rawfile 2>/dev/null | grep RUNTYPE | grep -E -o "['][a-z-]+[']" | sed -e "s/'//g"`
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| 203 | mjdrefraw=`$factpath/fitsdump -h $rawfile 2>/dev/null | grep 'MJDREF' | grep -E -o '[0-9]{5}'`
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| 204 | tstarti=`$factpath/fitsdump -h $rawfile 2>/dev/null | grep 'TSTARTI' | grep -E -o '[0-9]{5}'`
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| 205 | tstartf=`$factpath/fitsdump -h $rawfile 2>/dev/null | grep 'TSTARTF' | grep -E -o '0[.][0-9]+'`
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| 206 | tstopi=`$factpath/fitsdump -h $rawfile 2>/dev/null | grep 'TSTOPI' | grep -E -o '[0-9]{5}'`
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| 207 | tstopf=`$factpath/fitsdump -h $rawfile 2>/dev/null | grep 'TSTOPF' | grep -E -o '0[.][0-9]+'`
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| 208 | if [ "$tstarti" == "" ] || [ "$tstopi" == "" ] || [ "$tstartf" == "" ] || [ "$tstopf" == "" ]
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| 209 | then
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| 210 | printprocesslog "WARN: "$rawfile": one of the following keywords is empty or 0: TSTARTI TSTARTF TSTOPI TSTOPF "
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| 211 | continue
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| 212 | fi
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| 213 | # assuming that at least TSTARTI and TSTOPI are consistent
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| 214 | #echo $rawfile
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| 215 | #echo $tstarti
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| 216 | #echo $tstopi
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| 217 | #echo $tstartf
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| 218 | #echo $tstopf
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| 219 | if [ $tstarti -gt 30000 ]
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| 220 | then
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| 221 | tstart=`echo " $tstarti + $tstartf - 40587 " | bc -l`
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| 222 | tstart2=`echo " $tstarti + $tstartf - 40587 - 0.00011574 " | bc -l` # 10 sec
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| 223 | #tstart2=`echo " $tstarti + $tstartf - 40587 - 0.000023148 " | bc -l` # 2 sec
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| 224 | tstop=`echo " $tstopi + $tstopf - 40587 " | bc -l`
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| 225 | else
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| 226 | tstart=`echo " $tstarti + $tstartf " | bc -l`
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| 227 | tstart2=`echo " $tstarti + $tstartf - 0.00011574 " | bc -l` # 10 sec
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| 228 | #tstart2=`echo " $tstarti + $tstartf - 0.000023148 " | bc -l` # 2 sec
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| 229 | tstop=`echo " $tstopi + $tstopf " | bc -l`
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| 230 | fi
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| 231 | #echo $tstart
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| 232 | #echo $tstop
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| 233 | #if [ $runnumber -eq 20111123 ]
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| 234 | #then
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| 235 | # # add mjdref for days were aux files were inconsistent
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| 236 | # tstart=`echo " $tstart + $mjdref " | bc -l`
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| 237 | # tstart2=`echo " $tstart2 + $mjdref " | bc -l`
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| 238 | # tstop=`echo " $tstop + $mjdref " | bc -l`
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| 239 | #fi
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| 240 |
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| 241 | # get information from source_pos file
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| 242 | if [ -e $sourceposfile ] && [ $sourceposnumerrors -eq 0 ]
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| 243 | then
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| 244 | #sourcename=`${factpath}/fitsdump ${sourceposfile} -c Time -c Name --filter='[1]<'${tstop} 2>/dev/null | tail -1 2>&1 | grep -o -E "['][a-zA-Z0-9\ ]+[']" | sed -e "s/'//g"`
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| 245 | sourcename=`/home/fact/FACT++.dbg/fitsdump ${sourceposfile} -c Time -c Name --filter='[1]<'${tstop} 2>/dev/null | tail -1 2>&1 | grep -o -E "['][a-zA-Z0-9\ ]+[']" | sed -e "s/'//g"`
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| 246 | #echo "/home/fact/FACT++.dbg/fitsdump ${sourceposfile} -c Time -c Name --filter='[1]<'${tstop} 2>/dev/null | tail -1 2>&1 "
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| 247 | #echo $sourcename
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| 248 | if [ "$sourcename" == "" ]
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| 249 | then
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| 250 | printprocesslog "INFO couldn't get sourcename ("$sourcename") from "$sourceposfile" for "$runnumber"_"$filenum
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| 251 | else
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| 252 | query="SELECT fSourceKey FROM Source WHERE fSourceName='"$sourcename"'"
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| 253 | sourcekey=`sendquery`
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| 254 | if [ "$sourcename" == "" ]
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| 255 | then
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| 256 | printprocesslog "WARN couldn't get sourcekey for source "$sourcename" from DB for "$runnumber"_"$filenum
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| 257 | fi
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| 258 | #echo $sourcekey
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| 259 | fi
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| 260 | fi
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| 261 |
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| 262 | # build query to update runinfo in DB
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| 263 | query="UPDATE RunInfo SET "
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| 264 | # fill source key only if available
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| 265 | if ! [ "$sourcekey" = "" ]
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| 266 | then
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| 267 | query=$query" fSourceKey="$sourcekey", "
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| 268 | fi
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| 269 |
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| 270 | # get information from tracking
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| 271 | if [ -e $trackingfile ] && [ $tracknumerrors -eq 0 ]
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| 272 | then
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| 273 | # RA
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| 274 | getfitsstatistics $trackingfile "Ra" $tstart $tstop
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| 275 | if [ "$min" == "$max" ] && [ $good -gt 0 ]
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| 276 | then
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| 277 | query=$query" fRightAscension="$mean
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| 278 | else
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| 279 | query=$query" fRightAscension=NULL"
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| 280 | if [ $good -gt 0 ]
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| 281 | then
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| 282 | printprocesslog "WARN for $rawfile RA changes within run (min: "$min", max: "$max")."
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| 283 | fi
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| 284 | fi
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| 285 | # Declination
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| 286 | getfitsstatistics $trackingfile "Dec" $tstart $tstop
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| 287 | if [ "$decmin" == "$decmax" ] && [ $good -gt 0 ]
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| 288 | then
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| 289 | query=$query", fDeclination="$mean
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| 290 | else
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| 291 | query=$query", fDeclination=NULL"
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| 292 | if [ $good -gt 0 ]
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| 293 | then
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| 294 | printprocesslog "WARN for $rawfile declination changes within run (min: "$min", max: "$max")."
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| 295 | fi
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| 296 | fi
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| 297 | # Zd
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| 298 | getfitsstatistics $trackingfile "Zd" $tstart $tstop
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| 299 | if [ $good -gt 0 ]
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| 300 | then
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| 301 | query=$query", fZenithDistanceMin="$min
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| 302 | query=$query", fZenithDistanceMean="$mean
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| 303 | query=$query", fZenithDistanceMax="$max
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| 304 | else
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| 305 | query=$query", fZenithDistanceMin=NULL"
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| 306 | query=$query", fZenithDistanceMean=NULL"
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| 307 | query=$query", fZenithDistanceMax=NULL"
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| 308 | fi
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| 309 | # Az
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| 310 | getfitsstatistics $trackingfile "Az" $tstart $tstop
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| 311 | if [ $good -gt 0 ]
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| 312 | then
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| 313 | query=$query", fAzimuthMin="$min
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| 314 | query=$query", fAzimuthMean="$mean
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| 315 | query=$query", fAzimuthMax="$max
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| 316 | else
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| 317 | query=$query", fAzimuthMin=NULL"
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| 318 | query=$query", fAzimuthMean=NULL"
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| 319 | query=$query", fAzimuthMax=NULL"
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| 320 | fi
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| 321 | else
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| 322 | query=$query" fRightAscension=NULL"
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| 323 | query=$query", fDeclination=NULL"
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| 324 | query=$query", fZenithDistanceMin=NULL"
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| 325 | query=$query", fZenithDistanceMean=NULL"
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| 326 | query=$query", fZenithDistanceMax=NULL"
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| 327 | query=$query", fAzimuthMin=NULL"
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| 328 | query=$query", fAzimuthMean=NULL"
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| 329 | query=$query", fAzimuthMax=NULL"
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| 330 | fi
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| 331 |
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| 332 | # get information from trigger
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| 333 | if [ -e $triggerratefile ] && [ $trignumerrors -eq 0 ]
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| 334 | then
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| 335 | #echo " $triggerratefile TriggerRate $tstart $tstop"
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| 336 | getfitsstatistics $triggerratefile "TriggerRate" $tstart $tstop
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| 337 | # if [ "$mjdreftrig" == "" ]
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| 338 | # then
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| 339 | # ratemin=`ftcopy $triggerratefile'[Time> '${tstart}' && Time< '${tstop}' && TriggerRate!=-1][col TriggerRate;Time]' - | ftcopy -'[col TriggerRate]' - | ftstat - | grep 'min' | grep -E -o '[0-9]+[.]?[0-9]*'`
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| 340 | # ratemax=`ftcopy $triggerratefile'[Time> '${tstart}' && Time< '${tstop}' && TriggerRate!=-1][col TriggerRate;Time]' - | ftcopy -'[col TriggerRate]' - | ftstat - | grep 'max' | grep -E -o '[0-9]+[.]?[0-9]*'`
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| 341 | # ratemean=`ftcopy $triggerratefile'[Time> '${tstart}' && Time< '${tstop}' && TriggerRate!=-1][col TriggerRate;Time]' - | ftcopy -'[col TriggerRate]' - | ftstat - | grep 'mean' | grep -E -o '[0-9]+[.]?[0-9]*'`
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| 342 | # ratemedian=`ftcopy $triggerratefile'[Time> '${tstart}' && Time< '${tstop}' && TriggerRate!=-1][col TriggerRate;Time]' - | ftcopy -'[col TriggerRate]' - | ftstat - | grep 'median' | grep -E -o '[0-9]+[.]?[0-9]*'`
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| 343 | # else
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| 344 | # ratemin=`ftcopy $triggerratefile'[Time> '${tstart}' && Time< '${tstop}' && TriggerRate!=-1][col TriggerRate;Time]' - | ftcopy -'[col TriggerRate]' - | ftstat - | grep 'min' | grep -E -o '[0-9]+[.]?[0-9]*'`
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| 345 | # ratemax=`ftcopy $triggerratefile'[Time> '${tstart}' && Time< '${tstop}' && TriggerRate!=-1][col TriggerRate;Time]' - | ftcopy -'[col TriggerRate]' - | ftstat - | grep 'max' | grep -E -o '[0-9]+[.]?[0-9]*'`
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| 346 | # ratemean=`ftcopy $triggerratefile'[Time> '${tstart}' && Time< '${tstop}' && TriggerRate!=-1][col TriggerRate;Time]' - | ftcopy -'[col TriggerRate]' - | ftstat - | grep 'mean' | grep -E -o '[0-9]+[.]?[0-9]*'`
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| 347 | # ratemedian=`ftcopy $triggerratefile'[Time> '${tstart}' && Time< '${tstop}' && TriggerRate!=-1][col TriggerRate;Time]' - | ftcopy -'[col TriggerRate]' - | ftstat - | grep 'median' | grep -E -o '[0-9]+[.]?[0-9]*'`
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| 348 | # fi
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| 349 | if [ $good -gt 0 ]
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| 350 | then
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| 351 | query=$query", fTriggerRateMedian="$median
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| 352 | else
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| 353 | query=$query", fTriggerRateMedian=NULL"
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| 354 | fi
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| 355 | else
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| 356 | query=$query", fTriggerRateMedian=NULL"
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| 357 | fi
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| 358 |
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| 359 | # get information from thresholds
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| 360 | if [ -e $thresholdfile ] && [ $treshnumerrors -eq 0 ]
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| 361 | then
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| 362 | getfitsstatistics $thresholdfile "PatchThresh" $tstart $tstop
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| 363 | if [ $good -eq 0 ]
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| 364 | then
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| 365 | getfitsstatistics $thresholdfile "PatchThresh" $tstart2 $tstop
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| 366 | fi
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| 367 | if [ $good -gt 0 ]
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| 368 | then
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| 369 | query=$query", fThresholdMedian="$median
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| 370 | else
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| 371 | query=$query", fThresholdMedian=NULL"
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| 372 | fi
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| 373 | else
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| 374 | query=$query", fThresholdMedian=NULL"
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| 375 | fi
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| 376 |
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| 377 | # get information from bias: U
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| 378 | if [ -e $biasvoltagefile ] && [ $biasnumerrors -eq 0 ]
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| 379 | then
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| 380 | if [ $runnumber -gt 20120324 ]
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| 381 | then
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| 382 | value="Uout"
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| 383 | else
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| 384 | value="U"
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| 385 | fi
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| 386 | getfitsstatistics $biasvoltagefile $value $tstart $tstop
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| 387 | if [ $good -eq 0 ]
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| 388 | then
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| 389 | getfitsstatistics $biasvoltagefile $value $tstart2 $tstop
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| 390 | fi
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| 391 | if [ $good -gt 0 ]
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| 392 | then
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| 393 | query=$query", fBiasVoltageMedian="$median
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| 394 | else
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| 395 | query=$query", fBiasVoltageMedian=NULL"
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| 396 | fi
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| 397 | else
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| 398 | query=$query", fBiasVoltageMedian=NULL"
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| 399 | fi
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| 400 |
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| 401 | # add where condition
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| 402 | query=$query" WHERE fNight="$runnumber" AND fRunID="$filenum
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| 403 | #echo $query
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| 404 |
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| 405 | # send query to DB
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| 406 | sendquery >/dev/null
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| 407 | done
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| 408 | done
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| 409 |
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| 410 | finish
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| 411 |
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| 412 |
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