| 1 | #!/bin/bash
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| 2 |
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| 3 | # new version of the script to run on newdaq
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| 4 |
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| 5 | # option whether to fill all row or only those where information is missing
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| 6 | # $doupdate might be given as environment variable
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| 7 | if [ "$doupdate" = "" ]
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| 8 | then
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| 9 | doupdate="yes" # update all entries (needed when new fields have been added)
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| 10 | doupdate="no" # fill only entries which are not yet existing (default)
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| 11 | fi
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| 12 |
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| 13 | source `dirname $0`/../Sourcefile.sh
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| 14 | printprocesslog "INFO starting $0 with option doupdate="$doupdate
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| 15 |
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| 16 | logfile=$runlogpath"/FillAuxData-"$datetime".log"
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| 17 | date >> $logfile
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| 18 |
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| 19 | # check if software is available
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| 20 | if ! ls $factpath/fitsdump >/dev/null 2>&1
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| 21 | then
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| 22 | printprocesslog "ERROR "$factpath"/fitsdump is not available."
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| 23 | finish
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| 24 | fi
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| 25 |
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| 26 | # get dates
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| 27 | if [ "$certaindate" != "" ]
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| 28 | then
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| 29 | checkstring=`echo $certaindate | grep -E -o '^20[0-9][0-9]\/[01][0-9]\/[0-3][0-9]$'`
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| 30 | if [ "$checkstring" = "" ]
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| 31 | then
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| 32 | echo "Please give the variable certaindate in the correct format (YYYY/MM/DD)"
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| 33 | finish
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| 34 | fi
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| 35 | getdates $certaindate
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| 36 | else
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| 37 | # get all night
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| 38 | #getdates "all"
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| 39 | # get last 3 nights if hour between 7 and 19h, else only current night
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| 40 | getdates 3 7 19
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| 41 | fi
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| 42 |
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| 43 |
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| 44 | printprocesslog "INFO processing the following night(s): "${dates[@]}
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| 45 | echo `date`": processing the following night(s): "${dates[@]} >> $logfile 2>&1
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| 46 |
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| 47 | # mjd of 1970-01-01
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| 48 | # needed in this script as for 1 day the mjd in the aux files are inconsistent
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| 49 | # mjdref=40587
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| 50 |
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| 51 | # known:
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| 52 | # 2011/11/22 MJDREF in DRIVE empty, Time > 55000
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| 53 | # 2011/11/23 MJDREF in DRIVE not empty, Time > 55000
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| 54 | # 2011/11/24 MJDREF in DRIVE not empty, Time > 15000
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| 55 | # raw files
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| 56 | # 2011/11/21 no MJDREF
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| 57 | # 2011/11/22 MJDREF
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| 58 | # further things: https://www.fact-project.org/logbook/showthread.php?tid=67
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| 59 |
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| 60 | # trigger rate has as first value -1, but with using the median it should be fine
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| 61 |
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| 62 |
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| 63 | function evaluatestatistics()
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| 64 | {
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| 65 | # $1 variable name
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| 66 | # $@ statistics
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| 67 | if [ "$2" = "" ]
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| 68 | then
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| 69 | printprocesslog "WARN couldn't get statistics from file $1 for run "$date" "$file
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| 70 | continue
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| 71 | fi
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| 72 | min=
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| 73 | mean=
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| 74 | med=
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| 75 | max=
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| 76 | rms=
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| 77 | evaluation=`echo $@ | grep -E -o '\['${1}':0[:]?[0-9]*\]\ Min:\ [-]?[0-9]+[.]?[0-9]*\ Max:\ [-]?[0-9]+[.]?[0-9]*\ Med:\ [-]?[0-9]+[.]?[0-9]*\ Avg:\ [-]?[0-9]+[.]?[0-9]*\ Rms:\ [-]?[0-9]+[.]?[0-9]*[e]?[-]?[0-9]*'`
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| 78 | if [ "$evaluation" = "" ]
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| 79 | then
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| 80 | printprocesslog "WARN empty evaluation of statistic ("$@") for run "$date" "$file
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| 81 | #echo " ---> "$@
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| 82 | fi
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| 83 | #echo "ev: "$evaluation
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| 84 | min=`echo $evaluation | grep -E -o 'Min:\ [-]?[0-9]+[.]?[0-9]*' | sed -e 's/Min:\ //'`
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| 85 | max=`echo $evaluation | grep -E -o 'Max:\ [-]?[0-9]+[.]?[0-9]*' | sed -e 's/Max:\ //'`
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| 86 | med=`echo $evaluation | grep -E -o 'Med:\ [-]?[0-9]+[.]?[0-9]*' | sed -e 's/Med:\ //'`
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| 87 | mean=`echo $evaluation | grep -E -o 'Avg:\ [-]?[0-9]+[.]?[0-9]*' | sed -e 's/Avg:\ //'`
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| 88 | rms=`echo $evaluation | grep -E -o 'Rms:\ [-]?[0-9]+[.]?[0-9]*[e]?[-]?[0-9]+' | sed -e 's/Rms:\ //'`
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| 89 | #echo "eval: "$min" "$max" "$med" "$mean" "$rms
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| 90 | }
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| 91 |
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| 92 | # do filling of aux data
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| 93 | for date in ${dates[@]}
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| 94 | do
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| 95 | auxdir=$auxdata/$date
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| 96 | rawdir=$rawdata/$date
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| 97 | runnumber=`echo $date | sed -e 's/\///g'`
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| 98 |
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| 99 | # check if aux files are available from that night
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| 100 | if ! [ -d $auxdir ]
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| 101 | then
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| 102 | printprocesslog "INFO no data available in "$auxdir
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| 103 | continue
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| 104 | else
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| 105 | printprocesslog "INFO processing files in "$auxdir
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| 106 | #echo "INFO processing files in "$auxdir
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| 107 | fi
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| 108 |
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| 109 | # check if raw files are available from that night
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| 110 | # only needed to get start/stop time
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| 111 | # might be removed once the start/stop time comes from the DB
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| 112 | if ! [ -d $rawdir ]
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| 113 | then
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| 114 | printprocesslog "INFO no data available in "$rawdir" -> continue"
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| 115 | continue
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| 116 | fi
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| 117 |
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| 118 | # get file numbers from DB
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| 119 | # but only for not-corrupted files
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| 120 | # as aux files are written only once a minute, select only files which are older than 1.5 minutes
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| 121 | query="SELECT fRunID from RunInfo WHERE fNight="$runnumber" AND fFitsFileErrors=0 AND NOT ISNULL(fRunStop) AND fRunStop < SUBTIME(UTC_TIMESTAMP(), \"00:01:30\")"
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| 122 | # only runs which are not yet filled
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| 123 | if [ "$doupdate" = "no" ]
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| 124 | then
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| 125 | query=$query" AND ISNULL(fRightAscension) "
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| 126 | fi
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| 127 | printprocesslog "DEBUG get filenumbers from DB: QUERY: "$query
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| 128 | filenumbers=( `sendquery $query` )
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| 129 | if [ ${#filenumbers} -eq 0 ]
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| 130 | then
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| 131 | printprocesslog "INFO No files found in the DB for night "$date
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| 132 | continue
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| 133 | fi
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| 134 |
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| 135 | # get daily fits files
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| 136 | trackingfile=$auxdir/$runnumber.DRIVE_CONTROL_TRACKING_POSITION.fits
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| 137 | if ! [ -e $trackingfile ]
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| 138 | then
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| 139 | printprocesslog "WARN "$trackingfile" not found."
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| 140 | fi
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| 141 |
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| 142 | sourceposfile=$auxdir/$runnumber.DRIVE_CONTROL_SOURCE_POSITION.fits
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| 143 | if ! [ -e $sourceposfile ]
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| 144 | then
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| 145 | printprocesslog "WARN "$sourceposfile" not found."
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| 146 | else
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| 147 | sourceposfiletstarti=`$factpath/fitsdump -h $sourceposfile 2>/dev/null | grep 'TSTARTI' | grep -E -o '[0-9]{5}'`
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| 148 | sourceposfiletstartf=`$factpath/fitsdump -h $sourceposfile 2>/dev/null | grep 'TSTARTF' | grep -E -o '0[.][0-9]+'`
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| 149 | if [ $sourceposfiletstarti -gt 30000 ]
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| 150 | then
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| 151 | sourceposfiletstart=`echo " $sourceposfiletstarti + $sourceposfiletstartf - 40587 " | bc -l`
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| 152 | else
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| 153 | sourceposfiletstart=`echo " $sourceposfiletstarti + $sourceposfiletstartf " | bc -l`
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| 154 | fi
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| 155 | fi
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| 156 |
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| 157 | triggerratefile=$auxdir/$runnumber.FTM_CONTROL_TRIGGER_RATES.fits
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| 158 | if ! [ -e $triggerratefile ]
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| 159 | then
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| 160 | printprocesslog "WARN "$triggerratefile" not found."
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| 161 | fi
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| 162 |
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| 163 | thresholdfile=$auxdir/$runnumber.FTM_CONTROL_STATIC_DATA.fits
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| 164 | if ! [ -e $thresholdfile ]
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| 165 | then
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| 166 | printprocesslog "WARN "$thresholdfile" not found."
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| 167 | fi
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| 168 |
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| 169 | biasvoltagefile=$auxdir/$runnumber.BIAS_CONTROL_VOLTAGE.fits
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| 170 | if ! [ -e $biasvoltagefile ]
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| 171 | then
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| 172 | printprocesslog "WARN "$biasvoltagefile" not found."
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| 173 | fi
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| 174 |
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| 175 | # fill auxiliary information for files
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| 176 | for filenum in ${filenumbers[@]}
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| 177 | do
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| 178 | printprocesslog "INFO processing file number "$runnumber"_"`printf %03d $filenum`
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| 179 | echo `date`": processing file number "$runnumber"_"`printf %03d $filenum` >> $logfile 2>&1
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| 180 | #echo `date`": processing file number "$runnumber"_"`printf %03d $filenum`
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| 181 |
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| 182 | # get information from rawfile
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| 183 | rawfile=`ls $rawdir/$runnumber"_"\`printf %03d $filenum\`.fits*`
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| 184 | if ! [ -e $rawfile ]
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| 185 | then
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| 186 | printprocesslog "ERROR: "$rawfile" not found."
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| 187 | continue
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| 188 | fi
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| 189 |
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| 190 | #runtype=`$factpath/fitsdump -h $rawfile 2>/dev/null | grep RUNTYPE | grep -E -o "['][a-z-]+[']" | sed -e "s/'//g"`
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| 191 | #mjdrefraw=`$factpath/fitsdump -h $rawfile 2>/dev/null | grep 'MJDREF' | grep -E -o '[0-9]{5}'`
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| 192 | tstarti=`$factpath/fitsdump -h $rawfile 2>/dev/null | grep 'TSTARTI' | grep -E -o '[0-9]{5}'`
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| 193 | tstartf=`$factpath/fitsdump -h $rawfile 2>/dev/null | grep 'TSTARTF' | grep -E -o '0[.][0-9]+'`
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| 194 | tstopi=`$factpath/fitsdump -h $rawfile 2>/dev/null | grep 'TSTOPI' | grep -E -o '[0-9]{5}'`
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| 195 | tstopf=`$factpath/fitsdump -h $rawfile 2>/dev/null | grep 'TSTOPF' | grep -E -o '0[.][0-9]+'`
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| 196 | if [ "$tstarti" == "" ] || [ "$tstopi" == "" ] || [ "$tstartf" == "" ] || [ "$tstopf" == "" ]
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| 197 | then
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| 198 | printprocesslog "WARN: "$rawfile": one of the following keywords is empty or 0: TSTARTI TSTARTF TSTOPI TSTOPF "
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| 199 | continue
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| 200 | fi
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| 201 | # assuming that at least TSTARTI and TSTOPI are consistent
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| 202 | #echo $rawfile
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| 203 | #echo $tstarti
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| 204 | #echo $tstopi
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| 205 | #echo $tstartf
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| 206 | #echo $tstopf
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| 207 | if [ $tstarti -gt 30000 ]
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| 208 | then
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| 209 | tstart=`echo " $tstarti + $tstartf - 40587 " | bc -l`
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| 210 | tstart2=`echo " $tstarti + $tstartf - 40587 - 0.00011574 " | bc -l` # 10 sec
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| 211 | #tstart2=`echo " $tstarti + $tstartf - 40587 - 0.000023148 " | bc -l` # 2 sec
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| 212 | tstop=`echo " $tstopi + $tstopf - 40587 " | bc -l`
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| 213 | else
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| 214 | tstart=`echo " $tstarti + $tstartf " | bc -l`
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| 215 | tstart2=`echo " $tstarti + $tstartf - 0.00011574 " | bc -l` # 10 sec
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| 216 | #tstart2=`echo " $tstarti + $tstartf - 0.000023148 " | bc -l` # 2 sec
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| 217 | tstop=`echo " $tstopi + $tstopf " | bc -l`
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| 218 | fi
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| 219 | #echo $tstart
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| 220 | #echo $tstop
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| 221 | #if [ $runnumber -eq 20111123 ]
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| 222 | #then
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| 223 | # # add mjdref for days were aux files were inconsistent
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| 224 | # tstart=`echo " $tstart + $mjdref " | bc -l`
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| 225 | # tstart2=`echo " $tstart2 + $mjdref " | bc -l`
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| 226 | # tstop=`echo " $tstop + $mjdref " | bc -l`
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| 227 | #fi
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| 228 |
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| 229 | # get information from source_pos file
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| 230 | if [ -e $sourceposfile ]
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| 231 | then
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| 232 | sourcename=`$factpath/fitsdump ${sourceposfile} -c Time -c Name --filter='[1]<'${tstop}' && [1]>'${sourceposfiletstart} 2>/dev/null | tail -1 2>&1 | grep -o -E "['][a-zA-Z0-9\ \.\+\-]+[']" | sed -e "s/'//g"`
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| 233 | if [ "$sourcename" == "" ]
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| 234 | then
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| 235 | printprocesslog "INFO couldn't get sourcename ("$sourcename") from "$sourceposfile" for "$runnumber"_"$filenum
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| 236 | else
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| 237 | query="SELECT fSourceKey FROM Source WHERE fSourceName='"$sourcename"'"
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| 238 | sourcekey=`sendquery`
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| 239 | if [ "$sourcename" == "" ]
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| 240 | then
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| 241 | printprocesslog "WARN couldn't get sourcekey for source "$sourcename" from DB for "$runnumber"_"$filenum
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| 242 | fi
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| 243 | fi
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| 244 | fi
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| 245 |
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| 246 | # build query to update runinfo in DB
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| 247 | query="UPDATE RunInfo SET "
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| 248 |
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| 249 | # fill source key only if available
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| 250 | if ! [ "$sourcekey" = "" ]
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| 251 | then
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| 252 | query=$query" fSourceKey="$sourcekey", "
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| 253 | else
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| 254 | query=$query" fSourceKey=NULL, "
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| 255 | fi
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| 256 |
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| 257 | # get information from tracking
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| 258 | if [ -e $trackingfile ]
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| 259 | then
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| 260 | # get statistics
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| 261 | trackingstats=`$factpath/fitsdump $trackingfile -s -c Time -c Ra -c Dec -c Zd -c Az --filter='[1]<'${tstop}' && [1]>'${tstart} 2>/dev/null`
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| 262 | # RA
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| 263 | evaluatestatistics "Ra" $trackingstats
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| 264 | #echo $min"_"$max"_"$
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| 265 | if [ "$evaluation" != "" ]
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| 266 | then
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| 267 | if [ "$min" == "$max" ]
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| 268 | then
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| 269 | query=$query" fRightAscension="$mean
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| 270 | else
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| 271 | query=$query" fRightAscension=NULL"
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| 272 | printprocesslog "WARN for $rawfile RA changes within run (min: "$min", max: "$max")."
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| 273 | fi
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| 274 | # Declination
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| 275 | evaluatestatistics "Dec" $trackingstats
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| 276 | if [ "$decmin" == "$decmax" ]
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| 277 | then
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| 278 | query=$query", fDeclination="$mean
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| 279 | else
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| 280 | query=$query", fDeclination=NULL"
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| 281 | printprocesslog "WARN for $rawfile declination changes within run (min: "$min", max: "$max")."
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| 282 | fi
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| 283 | else
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| 284 | query=$query" fRightAscension=NULL"
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| 285 | query=$query", fDeclination=NULL"
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| 286 | fi
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| 287 | # Zd
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| 288 | evaluatestatistics "Zd" $trackingstats
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| 289 | if [ "$evaluation" != "" ]
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| 290 | then
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| 291 | query=$query", fZenithDistanceMin="$min
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| 292 | query=$query", fZenithDistanceMean="$mean
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| 293 | query=$query", fZenithDistanceMax="$max
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| 294 | else
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| 295 | query=$query", fZenithDistanceMin=NULL"
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| 296 | query=$query", fZenithDistanceMean=NULL"
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| 297 | query=$query", fZenithDistanceMax=NULL"
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| 298 | fi
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| 299 | # Az
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| 300 | evaluatestatistics "Az" $trackingstats
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| 301 | if [ "$evaluation" != "" ]
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| 302 | then
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| 303 | query=$query", fAzimuthMin="$min
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| 304 | query=$query", fAzimuthMean="$mean
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| 305 | query=$query", fAzimuthMax="$max
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| 306 | else
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| 307 | query=$query", fAzimuthMin=NULL"
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| 308 | query=$query", fAzimuthMean=NULL"
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| 309 | query=$query", fAzimuthMax=NULL"
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| 310 | fi
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| 311 | else
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| 312 | query=$query" fRightAscension=NULL"
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| 313 | query=$query", fDeclination=NULL"
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| 314 | query=$query", fZenithDistanceMin=NULL"
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| 315 | query=$query", fZenithDistanceMean=NULL"
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| 316 | query=$query", fZenithDistanceMax=NULL"
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| 317 | query=$query", fAzimuthMin=NULL"
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| 318 | query=$query", fAzimuthMean=NULL"
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| 319 | query=$query", fAzimuthMax=NULL"
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| 320 | fi
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| 321 |
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| 322 | # get information from trigger
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| 323 | if [ -e $triggerratefile ]
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| 324 | then
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| 325 | # get statistics
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| 326 | triggerstats=`$factpath/fitsdump $triggerratefile -s -c Time -c TriggerRate --filter='[1]<'${tstop}' && [1]>'${tstart} 2>/dev/null`
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| 327 | evaluatestatistics "TriggerRate" $triggerstats
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| 328 | if [ "$evaluation" != "" ]
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| 329 | then
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| 330 | query=$query", fTriggerRateMedian="$med
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| 331 | else
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| 332 | query=$query", fTriggerRateMedian=NULL"
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| 333 | fi
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| 334 | else
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| 335 | query=$query", fTriggerRateMedian=NULL"
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| 336 | fi
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| 337 |
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| 338 | # get information from thresholds
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| 339 | if [ -e $thresholdfile ]
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| 340 | then
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| 341 | # get statistics
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| 342 | thresholdstats=`$factpath/fitsdump $thresholdfile -s -c Time -c PatchThresh --filter='[1]<'${tstop}' && [1]>'${tstart} 2>/dev/null`
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| 343 | evaluatestatistics "PatchThresh" $thresholdstats
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| 344 | if [ "$evaluation" = "" ]
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| 345 | then
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| 346 | thresholdstats=`$factpath/fitsdump $thresholdfile -s -c Time -c PatchThresh --filter='[1]<'${tstop}' && [1]>'${tstart2} 2>/dev/null`
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| 347 | #echo "$factpath/fitsdump $thresholdfile -s -c Time -c PatchThresh --filter='[1]<'${tstop}' && [1]>'${tstart2} 2>/dev/null"
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| 348 | evaluatestatistics "PatchThresh" $thresholdstats
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| 349 | fi
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| 350 | if [ "$evaluation" != "" ]
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| 351 | then
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| 352 | query=$query", fThresholdMedian="$med
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| 353 | else
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| 354 | query=$query", fThresholdMedian=NULL"
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| 355 | fi
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| 356 | else
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| 357 | query=$query", fThresholdMedian=NULL"
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| 358 | fi
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| 359 |
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| 360 | # get information from bias: U
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| 361 | if [ -e $biasvoltagefile ]
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| 362 | then
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| 363 | if [ $runnumber -gt 20120324 ]
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| 364 | then
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| 365 | biasstats=`$factpath/fitsdump $biasvoltagefile -s -c Time -c Uout --filter='[1]<'${tstop}' && [1]>'${tstart} 2>/dev/null`
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| 366 | evaluatestatistics "Uout" $biasstats
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| 367 | if [ "$evaluation" = "" ]
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| 368 | then
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| 369 | biasstats=`$factpath/fitsdump $biasvoltagefile -s -c Time -c Uout --filter='[1]<'${tstop}' && [1]>'${tstart2} 2>/dev/null`
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| 370 | evaluatestatistics "Uout" $biasstats
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| 371 | fi
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| 372 | else
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| 373 | biasstats=`$factpath/fitsdump $biasvoltagefile -s -c Time -c U --filter='[1]<'${tstop}' && [1]>'${tstart} 2>/dev/null`
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| 374 | evaluatestatistics "U" $biasstats
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| 375 | if [ "$evaluation" = "" ]
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| 376 | then
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| 377 | biasstats=`$factpath/fitsdump $biasvoltagefile -s -c Time -c U --filter='[1]<'${tstop}' && [1]>'${tstart2} 2>/dev/null`
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| 378 | evaluatestatistics "U" $biasstats
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| 379 | fi
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| 380 | fi
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| 381 | if [ "$evaluation" != "" ]
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| 382 | then
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| 383 | query=$query", fBiasVoltageMedian="$med
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| 384 | else
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| 385 | query=$query", fBiasVoltageMedian=NULL"
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| 386 | fi
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| 387 | else
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| 388 | query=$query", fBiasVoltageMedian=NULL"
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| 389 | fi
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| 390 |
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| 391 | # add where condition
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| 392 | query=$query" WHERE fNight="$runnumber" AND fRunID="$filenum
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| 393 | #echo $query
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| 394 |
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| 395 | # send query to DB
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| 396 | sendquery >/dev/null
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| 397 | done
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| 398 | done
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| 399 |
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| 400 | finish
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| 401 |
|
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| 402 |
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