| 1 | #!/bin/bash
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| 2 |
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| 3 | # new version of the script to run on newdaq
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| 4 | # but can be also used at ISDC
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| 5 |
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| 6 | # option whether to fill all row or only those where information is missing
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| 7 | # $doupdate might be given as environment variable
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| 8 | if [ "$doupdate" = "" ]
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| 9 | then
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| 10 | # doupdate="yes" # update all entries (needed when new fields have been added)
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| 11 | # doupdate="force" # needed when something with insert in La Palma did not work (adds more information)
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| 12 | doupdate="no" # fill only entries which are not yet existing (default)
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| 13 | fi
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| 14 |
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| 15 | source `dirname $0`/../Sourcefile.sh
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| 16 | printprocesslog "INFO starting $0 with option doupdate="$doupdate
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| 17 |
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| 18 | logfile=$runlogpath"/FillAuxData-"$datetime".log"
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| 19 | date >> $logfile
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| 20 |
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| 21 | # check if software is available
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| 22 | if ! ls $factpath/fitsdump >/dev/null 2>&1
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| 23 | then
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| 24 | printprocesslog "ERROR "$factpath"/fitsdump is not available."
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| 25 | finish
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| 26 | fi
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| 27 |
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| 28 | # get dates
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| 29 | if [ "$certaindate" != "" ]
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| 30 | then
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| 31 | getdates $certaindate
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| 32 | else
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| 33 | # get all night
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| 34 | #getdates "all"
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| 35 | # get last 3 nights if hour between 7 and 19h, else only current night
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| 36 | getdates 3 7 19
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| 37 | fi
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| 38 |
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| 39 |
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| 40 |
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| 41 | printprocesslog "INFO processing the following night(s): "${dates[@]}
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| 42 | echo `date`": processing the following night(s): "${dates[@]} >> $logfile 2>&1
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| 43 |
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| 44 | # mjd of 1970-01-01
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| 45 | # needed in this script as for 1 day the mjd in the aux files are inconsistent
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| 46 | # mjdref=40587
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| 47 |
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| 48 | # known:
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| 49 | # 2011/11/22 MJDREF in DRIVE empty, Time > 55000
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| 50 | # 2011/11/23 MJDREF in DRIVE not empty, Time > 55000
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| 51 | # 2011/11/24 MJDREF in DRIVE not empty, Time > 15000
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| 52 | # raw files
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| 53 | # 2011/11/21 no MJDREF
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| 54 | # 2011/11/22 MJDREF
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| 55 | # further things: https://www.fact-project.org/logbook/showthread.php?tid=67
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| 56 |
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| 57 | # trigger rate has as first value -1, but with using the median it should be fine
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| 58 |
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| 59 |
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| 60 | function evaluatestatistics()
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| 61 | {
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| 62 | # $1 variable name
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| 63 | # $@ statistics
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| 64 | if [ "$2" = "" ]
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| 65 | then
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| 66 | printprocesslog "WARN couldn't get statistics from file $1 for run "$date" "$rawfile
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| 67 | continue
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| 68 | fi
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| 69 | min=
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| 70 | mean=
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| 71 | med=
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| 72 | max=
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| 73 | rms=
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| 74 | evaluation=`echo $@ | grep -E -o '\['${1}':0[:]?[0-9]*\]\ Min:\ [-]?[0-9]+[.]?[0-9]*\ Max:\ [-]?[0-9]+[.]?[0-9]*\ Med:\ [-]?[0-9]+[.]?[0-9]*\ Avg:\ [-]?[0-9]+[.]?[0-9]*\ Rms:\ [-]?[0-9]+[.]?[0-9]*[e]?[-]?[0-9]*'`
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| 75 | if [ "$evaluation" = "" ]
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| 76 | then
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| 77 | if [ $runtypekey -ne 1 ] #|| [ $sourcekey -gt 0 ] #doesn't work as sourcekey can be empty
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| 78 | then
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| 79 | printprocesslog "DEBUG empty evaluation of statistic ("$@") for run "$date" file "$rawfile
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| 80 | else
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| 81 | printprocesslog "WARN empty evaluation of statistic ("$@") for run "$date" file "$rawfile
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| 82 | fi
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| 83 | fi
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| 84 | min=`echo $evaluation | grep -E -o 'Min:\ [-]?[0-9]+[.]?[0-9]*' | sed -e 's/Min:\ //'`
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| 85 | max=`echo $evaluation | grep -E -o 'Max:\ [-]?[0-9]+[.]?[0-9]*' | sed -e 's/Max:\ //'`
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| 86 | med=`echo $evaluation | grep -E -o 'Med:\ [-]?[0-9]+[.]?[0-9]*' | sed -e 's/Med:\ //'`
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| 87 | mean=`echo $evaluation | grep -E -o 'Avg:\ [-]?[0-9]+[.]?[0-9]*' | sed -e 's/Avg:\ //'`
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| 88 | rms=`echo $evaluation | grep -E -o 'Rms:\ [-]?[0-9]+[.]?[0-9]*[e]?[-]?[0-9]+' | sed -e 's/Rms:\ //'`
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| 89 | }
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| 90 |
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| 91 | # do filling of aux data
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| 92 | for date in ${dates[@]}
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| 93 | do
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| 94 | auxdir=$auxdata/$date
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| 95 | rawdir=$rawdata/$date
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| 96 | runnumber=`echo $date | sed -e 's/\///g'`
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| 97 |
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| 98 | # check if aux files are available from that night
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| 99 | if ! [ -d $auxdir ]
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| 100 | then
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| 101 | printprocesslog "INFO no data available in "$auxdir
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| 102 | continue
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| 103 | else
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| 104 | printprocesslog "INFO processing files in "$auxdir
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| 105 | fi
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| 106 |
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| 107 | # check if raw files are available from that night
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| 108 | # only needed to get start/stop time
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| 109 | # might be removed once the start/stop time comes from the DB
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| 110 | if ! [ -d $rawdir ]
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| 111 | then
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| 112 | printprocesslog "INFO no data available in "$rawdir" -> continue"
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| 113 | continue
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| 114 | fi
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| 115 |
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| 116 | # get file numbers from DB
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| 117 | # but only for not-corrupted files
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| 118 | # as aux files are written only once a minute, select only files which are older than 1.5 minutes
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| 119 | query="SELECT fRunID from RunInfo WHERE fNight="$runnumber" AND fFitsFileErrors=0 AND NOT ISNULL(fRunStop) AND fRunStop < SUBTIME(UTC_TIMESTAMP(), \"00:01:30\")"
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| 120 | # only runs which are not yet filled
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| 121 | if [ "$doupdate" = "no" ]
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| 122 | then
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| 123 | query=$query" AND ISNULL(fRightAscension) "
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| 124 | fi
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| 125 | printprocesslog "DEBUG get filenumbers from DB: QUERY: "$query
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| 126 | filenumbers=( `sendquery $query` )
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| 127 | if [ ${#filenumbers} -eq 0 ]
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| 128 | then
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| 129 | printprocesslog "INFO No files found in the DB for night "$date
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| 130 | continue
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| 131 | fi
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| 132 |
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| 133 | # get daily fits files
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| 134 | trackingfile=$auxdir/$runnumber.DRIVE_CONTROL_TRACKING_POSITION.fits
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| 135 | check_file_avail $trackingfile
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| 136 |
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| 137 | sourceposfile=$auxdir/$runnumber.DRIVE_CONTROL_SOURCE_POSITION.fits
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| 138 | if check_file_avail $sourceposfile
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| 139 | then
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| 140 | sourceposfiletstarti=`$factpath/fitsdump -h $sourceposfile 2>/dev/null | grep 'TSTARTI' | grep -E -o '[0-9]{5}'`
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| 141 | sourceposfiletstartf=`$factpath/fitsdump -h $sourceposfile 2>/dev/null | grep 'TSTARTF' | grep -E -o '0[.][0-9]+'`
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| 142 | if [ $sourceposfiletstarti -gt 30000 ]
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| 143 | then
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| 144 | sourceposfiletstart=`echo " $sourceposfiletstarti + $sourceposfiletstartf - 40587 " | bc -l`
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| 145 | else
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| 146 | sourceposfiletstart=`echo " $sourceposfiletstarti + $sourceposfiletstartf " | bc -l`
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| 147 | fi
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| 148 | fi
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| 149 |
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| 150 | triggerratefile=$auxdir/$runnumber.FTM_CONTROL_TRIGGER_RATES.fits
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| 151 | check_file_avail $triggerratefile
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| 152 |
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| 153 | thresholdfile=$auxdir/$runnumber.FTM_CONTROL_STATIC_DATA.fits
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| 154 | check_file_avail $thresholdfile
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| 155 |
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| 156 | biasvoltagefile=$auxdir/$runnumber.BIAS_CONTROL_VOLTAGE.fits
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| 157 | check_file_avail $biasvoltagefile
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| 158 |
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| 159 | # fill auxiliary information for files
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| 160 | for filenum in ${filenumbers[@]}
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| 161 | do
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| 162 | printprocesslog "INFO processing file number "$runnumber"_"`printf %03d $filenum`
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| 163 | echo `date`": processing file number "$runnumber"_"`printf %03d $filenum` >> $logfile 2>&1
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| 164 | #echo `date`": processing file number "$runnumber"_"`printf %03d $filenum`
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| 165 |
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| 166 | # get information from rawfile
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| 167 | rawfile=`ls $rawdir/$runnumber"_"\`printf %03d $filenum\`.fits* 2>/dev/null`
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| 168 | if ! check_file_avail $rawfile
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| 169 | then
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| 170 | continue
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| 171 | fi
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| 172 |
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| 173 | runtype=`$factpath/fitsdump -h $rawfile 2>/dev/null | grep RUNTYPE | grep -E -o "['][a-z-]+[']" | sed -e "s/'//g"`
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| 174 | #mjdrefraw=`$factpath/fitsdump -h $rawfile 2>/dev/null | grep 'MJDREF' | grep -E -o '[0-9]{5}'`
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| 175 | tstarti=`$factpath/fitsdump -h $rawfile 2>/dev/null | grep 'TSTARTI' | grep -E -o '[0-9]{5}'`
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| 176 | tstartf=`$factpath/fitsdump -h $rawfile 2>/dev/null | grep 'TSTARTF' | grep -E -o '[0-9][.][0-9]+([E][\-][0-9][0-9])?' | sed -e 's/[E]+*/\\*10\\^/'`
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| 177 | tstopi=`$factpath/fitsdump -h $rawfile 2>/dev/null | grep 'TSTOPI' | grep -E -o '[0-9]{5}'`
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| 178 | tstopf=`$factpath/fitsdump -h $rawfile 2>/dev/null | grep 'TSTOPF' | grep -E -o '[0-9][.][0-9]+([E][\-][0-9][0-9])?' | sed -e 's/[E]+*/\\*10\\^/'`
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| 179 | if [ "$tstarti" == "" ] || [ "$tstopi" == "" ] || [ "$tstartf" == "" ] || [ "$tstopf" == "" ]
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| 180 | then
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| 181 | printprocesslog "WARN: "$rawfile": one of the following keywords is empty or 0: TSTARTI TSTARTF TSTOPI TSTOPF ("$filenum"/"$date")"
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| 182 | #echo "WARN: "$rawfile": one of the following keywords is empty or 0: TSTARTI TSTARTF TSTOPI TSTOPF ("$filenum"/"$date")"
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| 183 | continue
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| 184 | fi
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| 185 | #echo $rawfile" "$tstarti" "$tstartf" "$tstopi" "$tstopf
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| 186 | printprocesslog "DEBUG "$rawfile" "$tstarti" "$tstartf" "$tstopi" "$tstopf
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| 187 | # assuming that at least TSTARTI and TSTOPI are consistent
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| 188 | if [ $tstarti -gt 30000 ]
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| 189 | then
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| 190 | tstart=`echo " $tstarti + $tstartf - 40587 " | bc -l`
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| 191 | tstart2=`echo " $tstarti + $tstartf - 40587 - 0.00011574 " | bc -l` # 10 sec
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| 192 | #tstart2=`echo " $tstarti + $tstartf - 40587 - 0.000023148 " | bc -l` # 2 sec
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| 193 | tstop=`echo " $tstopi + $tstopf - 40587 " | bc -l`
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| 194 | else
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| 195 | tstart=`echo " $tstarti + $tstartf " | bc -l`
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| 196 | tstart2=`echo " $tstarti + $tstartf - 0.00011574 " | bc -l` # 10 sec
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| 197 | #tstart2=`echo " $tstarti + $tstartf - 0.000023148 " | bc -l` # 2 sec
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| 198 | tstop=`echo " $tstopi + $tstopf " | bc -l`
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| 199 | fi
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| 200 | #echo $rawfile" "$tstart" "$tstop
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| 201 | printprocesslog "DEBUG "$rawfile" "$tstart" "$tstop
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| 202 | # code for very old data
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| 203 | #if [ $runnumber -eq 20111123 ]
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| 204 | #then
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| 205 | # # add mjdref for days were aux files were inconsistent
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| 206 | # tstart=`echo " $tstart + $mjdref " | bc -l`
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| 207 | # tstart2=`echo " $tstart2 + $mjdref " | bc -l`
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| 208 | # tstop=`echo " $tstop + $mjdref " | bc -l`
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| 209 | #fi
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| 210 |
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| 211 | # get information from source_pos file
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| 212 | if [ -e $sourceposfile ]
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| 213 | then
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| 214 | sourcename=`$factpath/fitsdump ${sourceposfile} -c Time -c Name --filter='[1]<'${tstop}' && [1]>'${sourceposfiletstart} 2>/dev/null | tail -1 2>&1 | grep -o -E "['][a-zA-Z0-9\ \.\+\-]+[']" | sed -e "s/'//g"`
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| 215 | if [ "$sourcename" == "" ]
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| 216 | then
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| 217 | printprocesslog "INFO couldn't get sourcename ("$sourcename") from "$sourceposfile" for "$runnumber"_"$filenum
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| 218 | else
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| 219 | query="SELECT fSourceKey FROM Source WHERE fSourceName='"$sourcename"'"
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| 220 | sourcekey=`sendquery`
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| 221 | if [ "$sourcename" == "" ]
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| 222 | then
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| 223 | printprocesslog "WARN couldn't get sourcekey for source "$sourcename" from DB for "$runnumber"_"$filenum
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| 224 | fi
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| 225 | fi
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| 226 | fi
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| 227 | # set runtype to 'unknown', if no runtype could be retrieved from file
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| 228 | if [ "$runtype" == "" ]
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| 229 | then
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| 230 | runtype="n/a"
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| 231 | fi
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| 232 | # on 15.11.2011 the runtypes had different names
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| 233 | if [ "$date" == "2011/11/15" ]
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| 234 | then
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| 235 | if [ "$runtype" == "drs-calib" ]
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| 236 | then
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| 237 | runtype="drs-gain"
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| 238 | fi
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| 239 | if [ "$runtype" == "drs-time-calib" ]
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| 240 | then
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| 241 | runtype="drs-time"
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| 242 | fi
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| 243 | if [ "$runtype" == "pedestal" ]
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| 244 | then
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| 245 | runtype="drs-pedestal"
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| 246 | fi
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| 247 | if [ "$runtype" == "light-pulser" ]
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| 248 | then
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| 249 | runtype="light-pulser-ext"
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| 250 | fi
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| 251 | if [ "$runtype" == "pedestal-on" ]
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| 252 | then
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| 253 | runtype="pedestal"
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| 254 | fi
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| 255 | fi
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| 256 | # get runtype
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| 257 | query="SELECT fRunTypeKEY FROM RunType WHERE fRunTypeName='"$runtype"'"
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| 258 | result2=( `sendquery` )
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| 259 | if [ ${#result2} -eq 0 ]
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| 260 | then
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| 261 | printprocesslog "ERROR "$numberfromname": Could not query fRunTypeKey for runtype "$runtype" ."
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| 262 | continue
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| 263 | fi
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| 264 | runtypekey=${result2[0]}
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| 265 |
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| 266 | if [ "$doupdate" == "force" ]
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| 267 | then
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| 268 | # in newest data start time is in DATE-OBS
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| 269 | # in older data start time is in TSTART
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| 270 | # in the beginning TSTART was empty
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| 271 | #runstart=`$factpath/fitsdump -h -t Events $rawfile 2>/dev/null | grep DATE-OBS | grep -E -o '20[1-9][0-9][\-][01][0-9][\-][0-3][0-9]T[0-2][0-9]:[0-6][0-9]:[0-6][0-9][.][0-9]{6}'`
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| 272 | runstart=`$factpath/fitsdump -h $rawfile 2>/dev/null | grep DATE-OBS | grep -E -o '20[1-9][0-9][\-][01][0-9][\-][0-3][0-9]T[0-2][0-9]:[0-6][0-9]:[0-6][0-9][.][0-9]{6}'`
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| 273 | #runstart2=`$factpath/fitsdump -h -t Events $rawfile 2>/dev/null | grep TSTART | grep -E -o '20[1-9][0-9][\-][01][0-9][\-][0-3][0-9]T[0-2][0-9]:[0-6][0-9]:[0-6][0-9][.][0-9]{6}'`
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| 274 | runstart2=`$factpath/fitsdump -h $rawfile 2>/dev/null | grep TSTART | grep -E -o '20[1-9][0-9][\-][01][0-9][\-][0-3][0-9]T[0-2][0-9]:[0-6][0-9]:[0-6][0-9][.][0-9]{6}'`
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| 275 | if [ "$runstart" == "" ]
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| 276 | then
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| 277 | if [ "$runstart2" == "" ]
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| 278 | then
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| 279 | #runstart=`$factpath/fitsdump -h -t Events $rawfile 2>/dev/null | grep DATE | grep -v 'DATE-' | grep -E -o '20[1-9][0-9][\-][01][0-9][\-][0-3][0-9]T[0-2][0-9]:[0-6][0-9]:[0-6][0-9][.][0-9]{6}'`
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| 280 | runstart=`$factpath/fitsdump -h $rawfile 2>/dev/null | grep DATE | grep -v 'DATE-' | grep -E -o '20[1-9][0-9][\-][01][0-9][\-][0-3][0-9]T[0-2][0-9]:[0-6][0-9]:[0-6][0-9][.][0-9]{6}'`
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| 281 | else
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| 282 | runstart=$runstart2
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| 283 | fi
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| 284 | fi
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| 285 | # in newest data start time is in DATE-END
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| 286 | # in older data start time is in TSTOP
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| 287 | # in the beginning TSTOP was empty
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| 288 | #runstop=`$factpath/fitsdump -h -t Events $rawfile 2>/dev/null | grep DATE-END | grep -E -o '20[1-9][0-9][\-][01][0-9][\-][0-3][0-9]T[0-2][0-9]:[0-6][0-9]:[0-6][0-9][.][0-9]{6}'`
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| 289 | runstop=`$factpath/fitsdump -h $rawfile 2>/dev/null | grep DATE-END | grep -E -o '20[1-9][0-9][\-][01][0-9][\-][0-3][0-9]T[0-2][0-9]:[0-6][0-9]:[0-6][0-9][.][0-9]{6}'`
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| 290 | #runstop2=`$factpath/fitsdump -h -t Events $rawfile 2>/dev/null | grep TSTOP | grep -E -o '20[1-9][0-9][\-][01][0-9][\-][0-3][0-9]T[0-2][0-9]:[0-6][0-9]:[0-6][0-9][.][0-9]{6}'`
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| 291 | runstop2=`$factpath/fitsdump -h $rawfile 2>/dev/null | grep TSTOP | grep -E -o '20[1-9][0-9][\-][01][0-9][\-][0-3][0-9]T[0-2][0-9]:[0-6][0-9]:[0-6][0-9][.][0-9]{6}'`
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| 292 | if [ "$runstop" == "" ]
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| 293 | then
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| 294 | if [ "$runstop2" == "" ]
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| 295 | then
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| 296 | runstop=`stat $rawfile 2>/dev/null | grep Modify | grep -E -o '20[1-9][0-9][\-][01][0-9][\-][0-3][0-9][ ][0-2][0-9]:[0-6][0-9]:[0-6][0-9][.][0-9]{9}'`
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| 297 | else
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| 298 | runstop=$runstop2
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| 299 | fi
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| 300 | fi
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| 301 |
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| 302 | #numevents=`$factpath/fitsdump -h -t Events $rawfile 2>/dev/null | grep Events | grep -E -o '[0-9]+'`
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| 303 | numevents=`$factpath/fitsdump -h $rawfile 2>/dev/null | grep Events | grep -E -o '[0-9]+'`
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| 304 | #roi=`$factpath/fitsdump -h -t Events $rawfile 2>/dev/null | grep NROI | grep -v NROITM | grep -E -o '[0-9]{1,4}'`
|
|---|
| 305 | roi=`$factpath/fitsdump -h $rawfile 2>/dev/null | grep NROI | grep -v NROITM | grep -E -o '[0-9]{1,4}'`
|
|---|
| 306 | #roitm=`$factpath/fitsdump -h -t Events $rawfile 2>/dev/null | grep NROITM | grep -E -o '[0-9]{1,4}'`
|
|---|
| 307 | roitm=`$factpath/fitsdump -h $rawfile 2>/dev/null | grep NROITM | grep -E -o '[0-9]{1,4}'`
|
|---|
| 308 | #numphys=`$factpath/fitsdump -h -t Events $rawfile 2>/dev/null | grep 'NTRG ' | grep -E -o '[0-9]+'`
|
|---|
| 309 | numphys=`$factpath/fitsdump -h $rawfile 2>/dev/null | grep 'NTRG ' | grep -E -o '[0-9]+'`
|
|---|
| 310 | #numext1=`$factpath/fitsdump -h -t Events $rawfile 2>/dev/null | grep 'NTRGEXT1' | grep -E -o '[ ][0-9]+[ ]' | sed -e 's/\ //g'`
|
|---|
| 311 | numext1=`$factpath/fitsdump -h $rawfile 2>/dev/null | grep 'NTRGEXT1' | grep -E -o '[ ][0-9]+[ ]' | sed -e 's/\ //g'`
|
|---|
| 312 | #numext2=`$factpath/fitsdump -h -t Events $rawfile 2>/dev/null | grep 'NTRGEXT2' | grep -E -o '[ ][0-9]+[ ]' | sed -e 's/\ //g'`
|
|---|
| 313 | numext2=`$factpath/fitsdump -h $rawfile 2>/dev/null | grep 'NTRGEXT2' | grep -E -o '[ ][0-9]+[ ]' | sed -e 's/\ //g'`
|
|---|
| 314 | #numelp=`$factpath/fitsdump -h -t Events $rawfile 2>/dev/null | grep 'NTRGLPE' | grep -E -o '[0-9]+'`
|
|---|
| 315 | numelp=`$factpath/fitsdump -h $rawfile 2>/dev/null | grep 'NTRGLPE' | grep -E -o '[0-9]+'`
|
|---|
| 316 | #numilp=`$factpath/fitsdump -h -t Events $rawfile 2>/dev/null | grep 'NTRGLPI' | grep -E -o '[0-9]+'`
|
|---|
| 317 | numilp=`$factpath/fitsdump -h $rawfile 2>/dev/null | grep 'NTRGLPI' | grep -E -o '[0-9]+'`
|
|---|
| 318 | #numoth=`$factpath/fitsdump -h -t Events $rawfile 2>/dev/null | grep 'NTRGMISC' | grep -E -o '[0-9]+'`
|
|---|
| 319 | numoth=`$factpath/fitsdump -h $rawfile 2>/dev/null | grep 'NTRGMISC' | grep -E -o '[0-9]+'`
|
|---|
| 320 | #numped=`$factpath/fitsdump -h -t Events $rawfile 2>/dev/null | grep 'NTRGPED' | grep -E -o '[0-9]+'`
|
|---|
| 321 | numped=`$factpath/fitsdump -h $rawfile 2>/dev/null | grep 'NTRGPED' | grep -E -o '[0-9]+'`
|
|---|
| 322 | #numtime=`$factpath/fitsdump -h -t Events $rawfile 2>/dev/null | grep 'NTRGTIM' | grep -E -o '[0-9]+'`
|
|---|
| 323 | numtime=`$factpath/fitsdump -h $rawfile 2>/dev/null | grep 'NTRGTIM' | grep -E -o '[0-9]+'`
|
|---|
| 324 | #compiled=`$factpath/fitsdump -h -t Events $rawfile 2>/dev/null | grep 'COMPILED' | grep -E -o "['][a-zA-Z]+[ ][ 12][0-9][ ]20[0-9][0-9][ ][0-2][0-9]:[0-5][0-9]:[0-5][0-9][']" | sed -e "s/'//g"`
|
|---|
| 325 | compiled=`$factpath/fitsdump -h $rawfile 2>/dev/null | grep 'COMPILED' | grep -E -o "['][a-zA-Z]+[ ][ 12][0-9][ ]20[0-9][0-9][ ][0-2][0-9]:[0-5][0-9]:[0-5][0-9][']" | sed -e "s/'//g"`
|
|---|
| 326 | if ! [ "$compiled" == "" ]
|
|---|
| 327 | then
|
|---|
| 328 | compiletime=`date +'%F %H:%M:%S' --date="${compiled}" `
|
|---|
| 329 | else
|
|---|
| 330 | compiletime=
|
|---|
| 331 | fi
|
|---|
| 332 | #revnum=`$factpath/fitsdump -h -t Events $rawfile 2>/dev/null | grep 'REVISION' | grep -E -o "['][0-9]+[:]?[0-9]*[MSP]*[']" | sed -e "s/'//g"`
|
|---|
| 333 | revnum=`$factpath/fitsdump -h $rawfile 2>/dev/null | grep 'REVISION' | grep -E -o "['][0-9]+[:]?[0-9]*[MSP]*[']" | sed -e "s/'//g"`
|
|---|
| 334 | # get checksums from header
|
|---|
| 335 | #checksum=`$factpath/fitsdump -h -t Events $rawfile 2>/dev/null | grep CHECKSUM | grep -E -o '[a-zA-Z0-9]{16}'`
|
|---|
| 336 | checksum=`$factpath/fitsdump -h $rawfile 2>/dev/null | grep CHECKSUM | grep -E -o '[a-zA-Z0-9]{16}'`
|
|---|
| 337 | if [ "$checksum" == "" ]
|
|---|
| 338 | then
|
|---|
| 339 | printprocesslog "WARN checksum for file "$rawfile" is empty."
|
|---|
| 340 | fi
|
|---|
| 341 | #datasum=`$factpath/fitsdump -h -t Events $rawfile 2>/dev/null | grep DATASUM | grep -E -o '[0-9]{1,10}'`
|
|---|
| 342 | datasum=`$factpath/fitsdump -h $rawfile 2>/dev/null | grep DATASUM | grep -E -o '[0-9]{1,10}'`
|
|---|
| 343 | if [ "$datasum" == "" ]
|
|---|
| 344 | then
|
|---|
| 345 | printprocesslog "WARN datasum for file "$rawfile" is empty."
|
|---|
| 346 | fi
|
|---|
| 347 | # check if this run has drs file
|
|---|
| 348 | # in case file is available, get STEP from header
|
|---|
| 349 | # in the very beginning only drs-files were existing
|
|---|
| 350 | # in the beginning the keywords DRSCALIB and STEP were not existing
|
|---|
| 351 | drsfile=`echo $rawfile | sed -e 's/fits/drs.fits/'`
|
|---|
| 352 | numdrsfiles=`ls $drsfile 2>/dev/null | wc -l`
|
|---|
| 353 | #drscalib=`$factpath/fitsdump -h -t Events $rawfile 2>/dev/null | grep DRSCALIB | grep -E -o "['][TF][']" | sed -e "s/'//g"`
|
|---|
| 354 | drscalib=`$factpath/fitsdump -h $rawfile 2>/dev/null | grep DRSCALIB | grep -E -o "[\ ][TF][\ ]" | sed -e "s/\ //g"`
|
|---|
| 355 | if [ "$drscalib" == "T" ]
|
|---|
| 356 | then
|
|---|
| 357 | #step=`$factpath/fitsdump -h -t Events $rawfile 2>/dev/null | grep DRSSTEP | grep -E -o "['][012][']" | sed -e "s/'//g"`
|
|---|
| 358 | step=`$factpath/fitsdump -h $rawfile 2>/dev/null | grep DRSSTEP | grep -E -o "[\ ][012][\ ]" | sed -e "s/\ //g"`
|
|---|
| 359 | #stepfromdrs=`$factpath/fitsdump -h -t Events $drsfile 2>/dev/null | grep STEP | grep -E -o "['][012][']" | sed -e "s/'//g"`
|
|---|
| 360 | stepfromdrs=`$factpath/fitsdump -h $drsfile 2>/dev/null | grep STEP | grep -E -o "[\ ][012][\ ]?" | sed -e "s/\ //g"`
|
|---|
| 361 | if [ "$stepfromdrs" != "$step" ]
|
|---|
| 362 | then
|
|---|
| 363 | printprocesslog "ERROR for file "$rawfile" step from drsfile ("$stepfromdrs") and from file ("$step") do not agree."
|
|---|
| 364 | if [ "$stepfromdrsfile" != "" ] && [ "$step" == "" ]
|
|---|
| 365 | then
|
|---|
| 366 | step=$stepfromdrsfile
|
|---|
| 367 | printprocesslog "WARN setting drsstep from drsfile ("$stepfromdrs") although value differs from the one in file "$rawfile"."
|
|---|
| 368 | fi
|
|---|
| 369 | fi
|
|---|
| 370 | if ! [ $numdrsfiles -eq 1 ]
|
|---|
| 371 | then
|
|---|
| 372 | printprocesslog "ERROR for file "$rawfile" number of drsfiles ("$numdrsfiles") and information from header ("$drscalib") don't agree."
|
|---|
| 373 | fi
|
|---|
| 374 | if [ "$step" = "" ]
|
|---|
| 375 | then
|
|---|
| 376 | printprocesslog "ERROR file "$rawfile" has drsfiles ("$numdrsfiles"), but step ("$step") is empty."
|
|---|
| 377 | fi
|
|---|
| 378 | else
|
|---|
| 379 | if ! [ "$drscalib" == "F" ]
|
|---|
| 380 | then
|
|---|
| 381 | printprocesslog "WARN for file "$rawfile" DRSCALIB is neither T nor F."
|
|---|
| 382 | fi
|
|---|
| 383 | fi
|
|---|
| 384 | fi
|
|---|
| 385 |
|
|---|
| 386 | # build query to update runinfo in DB
|
|---|
| 387 | query="UPDATE RunInfo SET "
|
|---|
| 388 |
|
|---|
| 389 | # fill source key only if available
|
|---|
| 390 | if ! [ "$sourcekey" = "" ]
|
|---|
| 391 | then
|
|---|
| 392 | query=$query" fSourceKey="$sourcekey", "
|
|---|
| 393 | else
|
|---|
| 394 | query=$query" fSourceKey=NULL, "
|
|---|
| 395 | fi
|
|---|
| 396 |
|
|---|
| 397 | # get information from tracking
|
|---|
| 398 | if [ -e $trackingfile ]
|
|---|
| 399 | then
|
|---|
| 400 | # get statistics
|
|---|
| 401 | trackingstats=`$factpath/fitsdump $trackingfile -s -c Time -c Ra -c Dec -c Zd -c Az --filter='[1]<'${tstop}' && [1]>'${tstart} 2>/dev/null`
|
|---|
| 402 | # RA
|
|---|
| 403 | evaluatestatistics "Ra" $trackingstats
|
|---|
| 404 | if [ "$evaluation" != "" ]
|
|---|
| 405 | then
|
|---|
| 406 | if [ "$min" == "$max" ]
|
|---|
| 407 | then
|
|---|
| 408 | query=$query" fRightAscension="$mean
|
|---|
| 409 | else
|
|---|
| 410 | query=$query" fRightAscension=NULL"
|
|---|
| 411 | printprocesslog "WARN for $rawfile RA changes within run (min: "$min", max: "$max")."
|
|---|
| 412 | fi
|
|---|
| 413 | # Declination
|
|---|
| 414 | evaluatestatistics "Dec" $trackingstats
|
|---|
| 415 | if [ "$decmin" == "$decmax" ]
|
|---|
| 416 | then
|
|---|
| 417 | query=$query", fDeclination="$mean
|
|---|
| 418 | else
|
|---|
| 419 | query=$query", fDeclination=NULL"
|
|---|
| 420 | printprocesslog "WARN for $rawfile declination changes within run (min: "$min", max: "$max")."
|
|---|
| 421 | fi
|
|---|
| 422 | else
|
|---|
| 423 | query=$query" fRightAscension=NULL"
|
|---|
| 424 | query=$query", fDeclination=NULL"
|
|---|
| 425 | fi
|
|---|
| 426 | # Zd
|
|---|
| 427 | evaluatestatistics "Zd" $trackingstats
|
|---|
| 428 | if [ "$evaluation" != "" ]
|
|---|
| 429 | then
|
|---|
| 430 | query=$query", fZenithDistanceMin="$min
|
|---|
| 431 | query=$query", fZenithDistanceMean="$mean
|
|---|
| 432 | query=$query", fZenithDistanceMax="$max
|
|---|
| 433 | else
|
|---|
| 434 | query=$query", fZenithDistanceMin=NULL"
|
|---|
| 435 | query=$query", fZenithDistanceMean=NULL"
|
|---|
| 436 | query=$query", fZenithDistanceMax=NULL"
|
|---|
| 437 | fi
|
|---|
| 438 | # Az
|
|---|
| 439 | evaluatestatistics "Az" $trackingstats
|
|---|
| 440 | if [ "$evaluation" != "" ]
|
|---|
| 441 | then
|
|---|
| 442 | query=$query", fAzimuthMin="$min
|
|---|
| 443 | query=$query", fAzimuthMean="$mean
|
|---|
| 444 | query=$query", fAzimuthMax="$max
|
|---|
| 445 | else
|
|---|
| 446 | query=$query", fAzimuthMin=NULL"
|
|---|
| 447 | query=$query", fAzimuthMean=NULL"
|
|---|
| 448 | query=$query", fAzimuthMax=NULL"
|
|---|
| 449 | fi
|
|---|
| 450 | else
|
|---|
| 451 | query=$query" fRightAscension=NULL"
|
|---|
| 452 | query=$query", fDeclination=NULL"
|
|---|
| 453 | query=$query", fZenithDistanceMin=NULL"
|
|---|
| 454 | query=$query", fZenithDistanceMean=NULL"
|
|---|
| 455 | query=$query", fZenithDistanceMax=NULL"
|
|---|
| 456 | query=$query", fAzimuthMin=NULL"
|
|---|
| 457 | query=$query", fAzimuthMean=NULL"
|
|---|
| 458 | query=$query", fAzimuthMax=NULL"
|
|---|
| 459 | fi
|
|---|
| 460 |
|
|---|
| 461 | # get information from trigger
|
|---|
| 462 | if [ -e $triggerratefile ]
|
|---|
| 463 | then
|
|---|
| 464 | # get statistics
|
|---|
| 465 | triggerstats=`$factpath/fitsdump $triggerratefile -s -c Time -c TriggerRate --filter='[1]<'${tstop}' && [1]>'${tstart} 2>/dev/null`
|
|---|
| 466 | evaluatestatistics "TriggerRate" $triggerstats
|
|---|
| 467 | if [ "$evaluation" != "" ]
|
|---|
| 468 | then
|
|---|
| 469 | query=$query", fTriggerRateMedian="$med
|
|---|
| 470 | else
|
|---|
| 471 | query=$query", fTriggerRateMedian=NULL"
|
|---|
| 472 | fi
|
|---|
| 473 | else
|
|---|
| 474 | query=$query", fTriggerRateMedian=NULL"
|
|---|
| 475 | fi
|
|---|
| 476 |
|
|---|
| 477 | # get information from thresholds
|
|---|
| 478 | if [ -e $thresholdfile ]
|
|---|
| 479 | then
|
|---|
| 480 | # get statistics
|
|---|
| 481 | thresholdstats=`$factpath/fitsdump $thresholdfile -s -c Time -c PatchThresh --filter='[1]<'${tstop}' && [1]>'${tstart} 2>/dev/null`
|
|---|
| 482 | evaluatestatistics "PatchThresh" $thresholdstats
|
|---|
| 483 | if [ "$evaluation" = "" ]
|
|---|
| 484 | then
|
|---|
| 485 | thresholdstats=`$factpath/fitsdump $thresholdfile -s -c Time -c PatchThresh --filter='[1]<'${tstop}' && [1]>'${tstart2} 2>/dev/null`
|
|---|
| 486 | #echo "$factpath/fitsdump $thresholdfile -s -c Time -c PatchThresh --filter='[1]<'${tstop}' && [1]>'${tstart2} 2>/dev/null"
|
|---|
| 487 | evaluatestatistics "PatchThresh" $thresholdstats
|
|---|
| 488 | fi
|
|---|
| 489 | if [ "$evaluation" != "" ]
|
|---|
| 490 | then
|
|---|
| 491 | query=$query", fThresholdMedian="$med
|
|---|
| 492 | else
|
|---|
| 493 | query=$query", fThresholdMedian=NULL"
|
|---|
| 494 | fi
|
|---|
| 495 | else
|
|---|
| 496 | query=$query", fThresholdMedian=NULL"
|
|---|
| 497 | fi
|
|---|
| 498 |
|
|---|
| 499 | # get information from bias: U
|
|---|
| 500 | if [ -e $biasvoltagefile ]
|
|---|
| 501 | then
|
|---|
| 502 | if [ $runnumber -gt 20120324 ]
|
|---|
| 503 | then
|
|---|
| 504 | biasstats=`$factpath/fitsdump $biasvoltagefile -s -c Time -c Uout --filter='[1]<'${tstop}' && [1]>'${tstart} 2>/dev/null`
|
|---|
| 505 | evaluatestatistics "Uout" $biasstats
|
|---|
| 506 | if [ "$evaluation" = "" ]
|
|---|
| 507 | then
|
|---|
| 508 | biasstats=`$factpath/fitsdump $biasvoltagefile -s -c Time -c Uout --filter='[1]<'${tstop}' && [1]>'${tstart2} 2>/dev/null`
|
|---|
| 509 | evaluatestatistics "Uout" $biasstats
|
|---|
| 510 | fi
|
|---|
| 511 | else
|
|---|
| 512 | biasstats=`$factpath/fitsdump $biasvoltagefile -s -c Time -c U --filter='[1]<'${tstop}' && [1]>'${tstart} 2>/dev/null`
|
|---|
| 513 | evaluatestatistics "U" $biasstats
|
|---|
| 514 | if [ "$evaluation" = "" ]
|
|---|
| 515 | then
|
|---|
| 516 | biasstats=`$factpath/fitsdump $biasvoltagefile -s -c Time -c U --filter='[1]<'${tstop}' && [1]>'${tstart2} 2>/dev/null`
|
|---|
| 517 | evaluatestatistics "U" $biasstats
|
|---|
| 518 | fi
|
|---|
| 519 | fi
|
|---|
| 520 | if [ "$evaluation" != "" ]
|
|---|
| 521 | then
|
|---|
| 522 | query=$query", fBiasVoltageMedian="$med
|
|---|
| 523 | else
|
|---|
| 524 | query=$query", fBiasVoltageMedian=NULL"
|
|---|
| 525 | fi
|
|---|
| 526 | else
|
|---|
| 527 | query=$query", fBiasVoltageMedian=NULL"
|
|---|
| 528 | fi
|
|---|
| 529 | if [ "$doupdate" == "force" ]
|
|---|
| 530 | then
|
|---|
| 531 | query=$query", fRunStart='"$runstart"', fRunStop='"$runstop"'"
|
|---|
| 532 | query=$query", fRunTypeKey="$runtypekey
|
|---|
| 533 | if [ "$numevents" != "" ]
|
|---|
| 534 | then
|
|---|
| 535 | query=$query", fNumEvents="$numevents
|
|---|
| 536 | fi
|
|---|
| 537 | if [ "$roi" != "" ]
|
|---|
| 538 | then
|
|---|
| 539 | query=$query", fROI="$roi
|
|---|
| 540 | fi
|
|---|
| 541 | if [ "$roitm" != "" ]
|
|---|
| 542 | then
|
|---|
| 543 | query=$query", fROITimeMarker="$roitm
|
|---|
| 544 | fi
|
|---|
| 545 | if [ "$numphys" != "" ]
|
|---|
| 546 | then
|
|---|
| 547 | query=$query", fNumPhysicsTrigger="$numphys
|
|---|
| 548 | fi
|
|---|
| 549 | if [ "$numext1" != "" ]
|
|---|
| 550 | then
|
|---|
| 551 | query=$query", fNumExt1Trigger="$numext1
|
|---|
| 552 | fi
|
|---|
| 553 | if [ "$numext2" != "" ]
|
|---|
| 554 | then
|
|---|
| 555 | query=$query", fNumExt2Trigger="$numext2
|
|---|
| 556 | fi
|
|---|
| 557 | if [ "$numelp" != "" ]
|
|---|
| 558 | then
|
|---|
| 559 | query=$query", fNumELPTrigger="$numelp
|
|---|
| 560 | fi
|
|---|
| 561 | if [ "$numilp" != "" ]
|
|---|
| 562 | then
|
|---|
| 563 | query=$query", fNumILPTrigger="$numilp
|
|---|
| 564 | fi
|
|---|
| 565 | if [ "$numped" != "" ]
|
|---|
| 566 | then
|
|---|
| 567 | query=$query", fNumPedestalTrigger="$numped
|
|---|
| 568 | fi
|
|---|
| 569 | if [ "$numtime" != "" ]
|
|---|
| 570 | then
|
|---|
| 571 | query=$query", fNumTimeTrigger="$numtime
|
|---|
| 572 | fi
|
|---|
| 573 | if [ "$numoth" != "" ]
|
|---|
| 574 | then
|
|---|
| 575 | query=$query", fNumOtherTrigger="$numoth
|
|---|
| 576 | fi
|
|---|
| 577 | if [ "$checksum" != "" ]
|
|---|
| 578 | then
|
|---|
| 579 | query=$query", fCheckSum='"$checksum"'"
|
|---|
| 580 | fi
|
|---|
| 581 | if [ "$datasum" != "" ]
|
|---|
| 582 | then
|
|---|
| 583 | query=$query", fDataSum='"$datasum"'"
|
|---|
| 584 | fi
|
|---|
| 585 | if [ "$numdrsfiles" != "" ]
|
|---|
| 586 | then
|
|---|
| 587 | query=$query", fHasDrsFile="$numdrsfiles
|
|---|
| 588 | fi
|
|---|
| 589 | if [ "$step" != "" ]
|
|---|
| 590 | then
|
|---|
| 591 | query=$query", fDrsStep="$step
|
|---|
| 592 | fi
|
|---|
| 593 | if [ "$compiletime" != "" ]
|
|---|
| 594 | then
|
|---|
| 595 | query=$query", fCompileTime='"$compiletime"'"
|
|---|
| 596 | fi
|
|---|
| 597 | if [ "$revnum" != "" ]
|
|---|
| 598 | then
|
|---|
| 599 | query=$query", fRevisionNumber='"$revnum"'"
|
|---|
| 600 | fi
|
|---|
| 601 | fi
|
|---|
| 602 |
|
|---|
| 603 |
|
|---|
| 604 | # add where condition
|
|---|
| 605 | query=$query" WHERE fNight="$runnumber" AND fRunID="$filenum
|
|---|
| 606 |
|
|---|
| 607 | # send query to DB
|
|---|
| 608 | sendquery >/dev/null
|
|---|
| 609 | done
|
|---|
| 610 | done
|
|---|
| 611 |
|
|---|
| 612 | finish
|
|---|
| 613 |
|
|---|
| 614 |
|
|---|
