| 1 | #!/bin/bash
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| 2 |
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| 3 | # option whether to fill all row or only those where information is missing
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| 4 | # $doupdate might be given as environment variable
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| 5 | if [ "$doupdate" = "" ]
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| 6 | then
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| 7 | doupdate="yes" # update all entries (needed when new fields have been added)
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| 8 | doupdate="no" # fill only entries which are not yet existing (default)
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| 9 | fi
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| 10 |
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| 11 | source `dirname $0`/../Sourcefile.sh
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| 12 | printprocesslog "INFO starting $0 with option doupdate="$doupdate
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| 13 |
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| 14 | logfile=$runlogpath"/FillAuxTemp-"$datetime".log"
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| 15 | date >> $logfile
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| 16 |
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| 17 | # setup to use ftools
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| 18 | source $HEADAS/headas-init.sh
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| 19 |
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| 20 | # check if software is available
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| 21 | if ! ls $factpath/fitsdump >/dev/null 2>&1
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| 22 | then
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| 23 | printprocesslog "ERROR "$factpath"/fitsdump is not available."
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| 24 | finish
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| 25 | fi
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| 26 |
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| 27 | # get dates
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| 28 | if [ "$certaindate" != "" ]
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| 29 | then
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| 30 | getdates $certaindate
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| 31 | echo `date`": processing the following night(s): "${dates[@]}
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| 32 | else
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| 33 | # get all night
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| 34 | #getdates "all"
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| 35 | # get last 6 nights
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| 36 | getdates 6
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| 37 | fi
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| 38 |
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| 39 |
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| 40 |
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| 41 | printprocesslog "INFO processing the following night(s): "${dates[@]}
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| 42 | echo `date`": processing the following night(s): "${dates[@]} >> $logfile 2>&1
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| 43 |
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| 44 | cd $mars
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| 45 |
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| 46 | # do filling of aux data
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| 47 | for date in ${dates[@]}
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| 48 | do
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| 49 | auxdir=$auxdata/$date
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| 50 | runnumber=`echo $date | sed -e 's/\///g'`
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| 51 | if [ $runnumber -lt 20120328 ]
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| 52 | then
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| 53 | continue
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| 54 | fi
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| 55 |
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| 56 | # check if aux files are available from that night
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| 57 | if ! [ -d $auxdir ]
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| 58 | then
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| 59 | printprocesslog "INFO no data available in "$auxdir
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| 60 | continue
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| 61 | else
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| 62 | printprocesslog "INFO processing files in "$auxdir
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| 63 | fi
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| 64 |
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| 65 | # get file numbers from DB
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| 66 | # but only for not-corrupted files
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| 67 | query="SELECT fRunID from RunInfo WHERE fNight="$runnumber" AND fFitsFileErrors=0 "
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| 68 | if [ "$doupdate" = "no" ]
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| 69 | then
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| 70 | query=$query" AND ISNULL(fCameraTempMean) "
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| 71 | fi
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| 72 | printprocesslog "DEBUG get filenumbers from DB: QUERY: "$query
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| 73 | filenumbers=( `sendquery $query` )
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| 74 | # proceed only if there are files available
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| 75 | if [ ${#filenumbers} -eq 0 ]
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| 76 | then
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| 77 | printprocesslog "INFO No files found in the DB for night "$date
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| 78 | continue
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| 79 | fi
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| 80 |
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| 81 | magicweatherfile=$auxdir/$runnumber.MAGIC_WEATHER_DATA.fits
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| 82 | if ! [ -e $magicweatherfile ]
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| 83 | then
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| 84 | printprocesslog "WARN "$magicweatherfile" not found."
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| 85 | else
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| 86 | weathernumerrors=`fverify $magicweatherfile 2>/dev/null | grep -o '[0-9][ ]error(s)' | grep -E -o '[0-9]'`
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| 87 | if [ $weathernumerrors -gt 0 ]
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| 88 | then
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| 89 | printprocesslog "WARN for $magicweatherfile fverify returned "$weathernumerrors" error(s)."
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| 90 | fi
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| 91 | fi
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| 92 |
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| 93 | # fill auxiliary information for files
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| 94 | for filenum in ${filenumbers[@]}
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| 95 | do
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| 96 | printprocesslog "INFO processing file number "$runnumber"_"`printf %03d $filenum`
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| 97 | echo `date`": processing file number "$runnumber"_"`printf %03d $filenum` >> $logfile 2>&1
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| 98 | # get information from rawfile
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| 99 | rawfile=$ziprawdata/$date/$runnumber"_"`printf %03d $filenum`.fits.fz
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| 100 | if ! [ -e $rawfile ]
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| 101 | then
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| 102 | if [ $runnumber -lt $checknight ]
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| 103 | then
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| 104 | printprocesslog "WARN "$rawfile" not found."
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| 105 | else
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| 106 | printprocesslog "INFO "$rawfile" not found."
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| 107 | fi
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| 108 | printprocesslog "INFO getting information from DB for "$rawfile
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| 109 | # get information from DB
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| 110 | query="SELECT Mjd(fRunStart)-40587 FROM RunInfo WHERE fNight="$runnumber" AND fRunID="$filenum
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| 111 | tstart=`sendquery`
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| 112 | query="SELECT Mjd(fRunStop)-40587 FROM RunInfo WHERE fNight="$runnumber" AND fRunID="$filenum
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| 113 | tstop=`sendquery`
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| 114 | query="SELECT Mjd(fRunStart)-40587-0.00011574 FROM RunInfo WHERE fNight="$runnumber" AND fRunID="$filenum
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| 115 | tstart2=`sendquery`
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| 116 | query="SELECT Mjd(fRunStop)-40587-0.00011574 FROM RunInfo WHERE fNight="$runnumber" AND fRunID="$filenum
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| 117 | tstop2=`sendquery`
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| 118 | if [ "$tstart" = "" ] || [ "$tstop" = "" ] || [ "$runtype" = "n/a" ]
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| 119 | then
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| 120 | printprocesslog "WARN: "$rawfile" not available and one of the following information empty in DB: fRunStart("$tstart"), fRunStop("$tstop"), fRunTypeKey("$runtype") "
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| 121 | continue
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| 122 | fi
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| 123 | else
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| 124 | #checkfitsfile=`fverify $rawfile 2>/dev/null | grep '0 error(s)'`
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| 125 | #if [ "$checkfitsfile" == "" ]
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| 126 | #then
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| 127 | # numfitserrors=1
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| 128 | # printprocesslog "WARN: "$rawfile" probably corrupted."
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| 129 | # continue
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| 130 | #fi
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| 131 | mjdrefraw=`$factpath/fitsdump -h $rawfile 2>/dev/null | grep 'MJDREF' | grep -E -o '[0-9]{5}'`
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| 132 | tstarti=`$factpath/fitsdump -h $rawfile 2>/dev/null | grep 'TSTARTI' | grep -E -o '[0-9]{5}'`
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| 133 | tstartf=`$factpath/fitsdump -h $rawfile 2>/dev/null | grep 'TSTARTF' | grep -E -o '[0-9][.][0-9]+([E][\-][0-9][0-9])?' | sed -e 's/[E]+*/\\*10\\^/'`
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| 134 | tstopi=`$factpath/fitsdump -h $rawfile 2>/dev/null | grep 'TSTOPI' | grep -E -o '[0-9]{5}'`
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| 135 | tstopf=`$factpath/fitsdump -h $rawfile 2>/dev/null | grep 'TSTOPF' | grep -E -o '[0-9][.][0-9]+([E][\-][0-9][0-9])?' | sed -e 's/[E]+*/\\*10\\^/'`
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| 136 | if [ "$tstarti" == "" ] || [ "$tstopi" == "" ] || [ "$tstartf" == "" ] || [ "$tstopf" == "" ]
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| 137 | then
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| 138 | printprocesslog "WARN: "$rawfile": one of the following keywords is empty or 0: TSTARTI TSTARTF TSTOPI TSTOPF "
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| 139 | continue
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| 140 | fi
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| 141 | # assuming that at least TSTARTI and TSTOPI are consistent
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| 142 | if [ $tstarti -gt 30000 ]
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| 143 | then
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| 144 | tstart=`echo " $tstarti + $tstartf - 40587 " | bc -l`
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| 145 | tstart2=`echo " $tstarti + $tstartf - 40587 - 0.00011574 " | bc -l` # 10 sec
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| 146 | #tstart2=`echo " $tstarti + $tstartf - 40587 - 0.000023148 " | bc -l` # 2 sec
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| 147 | tstop=`echo " $tstopi + $tstopf - 40587 " | bc -l`
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| 148 | else
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| 149 | tstart=`echo " $tstarti + $tstartf " | bc -l`
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| 150 | tstart2=`echo " $tstarti + $tstartf - 0.00011574 " | bc -l` # 10 sec
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| 151 | #tstart2=`echo " $tstarti + $tstartf - 0.000023148 " | bc -l` # 2 sec
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| 152 | tstop=`echo " $tstopi + $tstopf " | bc -l`
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| 153 | fi
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| 154 | #echo `date`": processing file number "$runnumber"_"`printf %03d $filenum`
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| 155 | fi
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| 156 |
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| 157 | # build query to update runinfo in DB
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| 158 | query="UPDATE RunInfo SET "
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| 159 |
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| 160 | # get information from weather: T
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| 161 | if [ -e $magicweatherfile ] && [ $weathernumerrors -eq 0 ]
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| 162 | then
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| 163 | #echo $magicweatherfile" "$tstart" "$tstop
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| 164 | printprocesslog "DEBUG root -q -b -l fact/processing/magicweather.C\("\"$magicweatherfile\""\,"$tstart"\,"$tstop"\)"
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| 165 | mtemps=( `root -q -b -l fact/processing/magicweather.C\("\"$magicweatherfile\""\,$tstart\,$tstop\) | grep "result" | grep -E -o '[-]?[0-9]+[.]?[0-9]*'` )
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| 166 | check1=$?
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| 167 | case $check1 in
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| 168 | 0) printprocesslog "INFO got info from "$magicweatherfile
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| 169 | ;;
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| 170 | *) printprocesslog "WARN getting info from "$magicweatherfile" failed (check1="$check1")."
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| 171 | ;;
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| 172 | esac
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| 173 | #echo ${mtemps[@]}
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| 174 | if [ "${mtemps[0]}" == "" ]
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| 175 | then
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| 176 | query=$query"fOutsideTempMean=NULL"
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| 177 | else
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| 178 | query=$query"fOutsideTempMean="${mtemps[0]}
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| 179 | fi
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| 180 | if [ "${mtemps[1]}" == "" ]
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| 181 | then
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| 182 | query=$query", fOutsideTempRms=NULL"
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| 183 | else
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| 184 | query=$query", fOutsideTempRms="${mtemps[1]}
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| 185 | fi
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| 186 | if [ "${mtemps[2]}" == "" ]
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| 187 | then
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| 188 | query=$query", fHumidityMean=NULL"
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| 189 | else
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| 190 | query=$query", fHumidityMean="${mtemps[2]}
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| 191 | fi
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| 192 | if [ "${mtemps[3]}" == "" ]
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| 193 | then
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| 194 | query=$query", fHumidityRms=NULL"
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| 195 | else
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| 196 | query=$query", fHumidityRms="${mtemps[3]}
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| 197 | fi
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| 198 | if [ "${mtemps[4]}" == "" ]
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| 199 | then
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| 200 | query=$query", fAirPressureMean=NULL"
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| 201 | else
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| 202 | query=$query", fAirPressureMean="${mtemps[4]}
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| 203 | fi
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| 204 | if [ "${mtemps[5]}" == "" ]
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| 205 | then
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| 206 | query=$query", fAirPressureRms=NULL"
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| 207 | else
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| 208 | query=$query", fAirPressureRms="${mtemps[5]}
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| 209 | fi
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| 210 | if [ "${mtemps[6]}" == "" ]
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| 211 | then
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| 212 | query=$query", fDewPointMean=NULL"
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| 213 | else
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| 214 | query=$query", fDewPointMean="${mtemps[6]}
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| 215 | fi
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| 216 | if [ "${mtemps[7]}" == "" ]
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| 217 | then
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| 218 | query=$query", fDewPointRms=NULL"
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| 219 | else
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| 220 | query=$query", fDewPointRms="${mtemps[7]}
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| 221 | fi
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| 222 | if [ "${mtemps[8]}" == "" ]
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| 223 | then
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| 224 | query=$query", fWindSpeedMean=NULL"
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| 225 | else
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| 226 | query=$query", fWindSpeedMean="${mtemps[8]}
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| 227 | fi
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| 228 | if [ "${mtemps[9]}" == "" ]
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| 229 | then
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| 230 | query=$query", fWindSpeedRms=NULL"
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| 231 | else
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| 232 | query=$query", fWindSpeedRms="${mtemps[9]}
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| 233 | fi
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| 234 | if [ "${mtemps[10]}" == "" ]
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| 235 | then
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| 236 | query=$query", fWindGustMean=NULL"
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| 237 | else
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| 238 | query=$query", fWindGustMean="${mtemps[10]}
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| 239 | fi
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| 240 | if [ "${mtemps[119]}" == "" ]
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| 241 | then
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| 242 | query=$query", fWindGustRms=NULL"
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| 243 | else
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| 244 | query=$query", fWindGustRms="${mtemps[11]}
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| 245 | fi
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| 246 | else
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| 247 | query=$query"fOutsideTempMean=NULL"
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| 248 | query=$query", fOutsideTempRms=NULL"
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| 249 | query=$query", fHumidityMean=NULL"
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| 250 | query=$query", fHumidityRms=NULL"
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| 251 | query=$query", fAirPressureMean=NULL"
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| 252 | query=$query", fAirPressureRms=NULL"
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| 253 | query=$query", fDewPointMean=NULL"
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| 254 | query=$query", fDewPointRms=NULL"
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| 255 | query=$query", fWindSpeedMean=NULL"
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| 256 | query=$query", fWindSpeedRms=NULL"
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| 257 | query=$query", fWindGustMean=NULL"
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| 258 | query=$query", fWindGustRms=NULL"
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| 259 | fi
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| 260 |
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| 261 | # add where condition
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| 262 | query=$query" WHERE fNight="$runnumber" AND fRunID="$filenum
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| 263 |
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| 264 | # send query to DB
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| 265 | sendquery >/dev/null
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| 266 | done
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| 267 | done
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| 268 |
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| 269 | finish
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| 270 |
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| 271 |
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