| 1 | #!/bin/bash
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| 2 |
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| 3 | # option whether to fill all row or only those where information is missing
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| 4 | # $doupdate might be given as environment variable
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| 5 | if [ "$doupdate" = "" ]
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| 6 | then
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| 7 | doupdate="yes" # update all entries (needed when new fields have been added)
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| 8 | doupdate="no" # fill only entries which are not yet existing (default)
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| 9 | fi
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| 10 |
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| 11 | source `dirname $0`/../Sourcefile.sh
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| 12 | printprocesslog "INFO starting $0 with option doupdate="$doupdate
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| 13 |
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| 14 | logfile=$runlogpath"/FillThresholds-"$datetime".log"
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| 15 | date >> $logfile
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| 16 |
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| 17 | # setup to use ftools
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| 18 | source $HEADAS/headas-init.sh
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| 19 |
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| 20 | # check if software is available
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| 21 | if ! ls $factpath/fitsdump >/dev/null 2>&1
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| 22 | then
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| 23 | printprocesslog "ERROR "$factpath"/fitsdump is not available."
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| 24 | finish
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| 25 | fi
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| 26 |
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| 27 |
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| 28 | # get dates
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| 29 | if [ "$certaindate" != "" ]
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| 30 | then
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| 31 | getdates $certaindate
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| 32 | else
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| 33 | # get all night
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| 34 | #getdates "all"
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| 35 | # get last 6 nights
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| 36 | getdates 6
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| 37 | fi
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| 38 |
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| 39 |
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| 40 |
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| 41 | printprocesslog "INFO processing the following night(s): "${dates[@]}
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| 42 | echo `date`": processing the following night(s): "${dates[@]} >> $logfile 2>&1
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| 43 |
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| 44 | cd $mars
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| 45 |
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| 46 | # do filling of aux data
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| 47 | for date in ${dates[@]}
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| 48 | do
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| 49 | auxdir=$auxdata/$date
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| 50 | runnumber=`echo $date | sed -e 's/\///g'`
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| 51 |
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| 52 | # get file numbers from DB
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| 53 | # but only for not-corrupted files
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| 54 | query="SELECT fRunID from RunInfo WHERE fNight="$runnumber" AND fFitsFileErrors=0 "
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| 55 | if [ "$doupdate" = "no" ]
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| 56 | then
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| 57 | query=$query" AND ISNULL(fThresholdMedMean) AND ISNULL(fThresholdMinSet) "
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| 58 | fi
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| 59 | printprocesslog "DEBUG get filenumbers from DB: QUERY: "$query
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| 60 | filenumbers=( `sendquery $query` )
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| 61 | # proceed only if there are files available
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| 62 | if [ ${#filenumbers} -eq 0 ]
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| 63 | then
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| 64 | printprocesslog "INFO No files found in the DB for night "$date
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| 65 | continue
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| 66 | fi
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| 67 |
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| 68 | # check if aux files are available from that night
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| 69 | if ! [ -d $auxdir ]
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| 70 | then
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| 71 | printprocesslog "INFO no data available in "$auxdir
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| 72 | continue
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| 73 | else
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| 74 | printprocesslog "INFO processing files in "$auxdir
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| 75 | fi
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| 76 |
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| 77 | thresholdfile=$auxdir/$runnumber.RATE_CONTROL_THRESHOLD.fits
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| 78 | printprocesslog "INFO processing "$thresholdfile
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| 79 | echo "INFO processing "$thresholdfile >> $logfile 2>&1
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| 80 | if ! [ -e $thresholdfile ]
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| 81 | then
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| 82 | printprocesslog "WARN "$thresholdfile" not found."
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| 83 | continue
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| 84 | else
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| 85 | threshnumerrors=`fverify $thresholdfile 2>/dev/null | grep -o '[0-9][ ]error(s)' | grep -E -o '[0-9]'`
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| 86 | if [ $threshnumerrors -gt 0 ]
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| 87 | then
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| 88 | printprocesslog "WARN for $thresholdfile fverify returned "$threshnumerrors" error(s)."
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| 89 | fi
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| 90 | fi
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| 91 |
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| 92 | thresholdfile2=$auxdir/$runnumber.FTM_CONTROL_STATIC_DATA.fits
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| 93 | if ! [ -e $thresholdfile2 ]
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| 94 | then
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| 95 | printprocesslog "WARN "$thresholdfile2" not found."
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| 96 | continue
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| 97 | else
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| 98 | threshnumerrors2=`fverify $thresholdfile2 2>/dev/null | grep -o '[0-9][ ]error(s)' | grep -E -o '[0-9]'`
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| 99 | if [ $threshnumerrors2 -gt 0 ]
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| 100 | then
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| 101 | printprocesslog "WARN for $thresholdfile2 fverify returned "$threshnumerrors2" error(s)."
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| 102 | fi
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| 103 | fi
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| 104 |
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| 105 | # fill auxiliary information for files
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| 106 | for filenum in ${filenumbers[@]}
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| 107 | do
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| 108 | printprocesslog "INFO processing file number "$runnumber"_"`printf %03d $filenum`
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| 109 | echo `date`": processing file number "$runnumber"_"`printf %03d $filenum` >> $logfile 2>&1
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| 110 | # get information from rawfile
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| 111 | rawfile=$ziprawdata/$date/$runnumber"_"`printf %03d $filenum`.fits.fz
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| 112 | if ! [ -e $rawfile ]
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| 113 | then
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| 114 | if [ $runnumber -lt $checknight ]
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| 115 | then
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| 116 | printprocesslog "WARN "$rawfile" not found."
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| 117 | else
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| 118 | printprocesslog "INFO "$rawfile" not found."
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| 119 | fi
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| 120 | continue
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| 121 | fi
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| 122 | runtype=`$factpath/fitsdump -h $rawfile 2>/dev/null | grep RUNTYPE | grep -E -o "['][a-z-]+[']" | sed -e "s/'//g"`
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| 123 | mjdrefraw=`$factpath/fitsdump -h $rawfile 2>/dev/null | grep 'MJDREF' | grep -E -o '[0-9]{5}'`
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| 124 | tstarti=`$factpath/fitsdump -h $rawfile 2>/dev/null | grep 'TSTARTI' | grep -E -o '[0-9]{5}'`
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| 125 | tstartf=`$factpath/fitsdump -h $rawfile 2>/dev/null | grep 'TSTARTF' | grep -E -o '[0-9][.][0-9]+([E][\-][0-9][0-9])?' | sed -e 's/[E]+*/\\*10\\^/'`
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| 126 | tstopi=`$factpath/fitsdump -h $rawfile 2>/dev/null | grep 'TSTOPI' | grep -E -o '[0-9]{5}'`
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| 127 | tstopf=`$factpath/fitsdump -h $rawfile 2>/dev/null | grep 'TSTOPF' | grep -E -o '[0-9][.][0-9]+([E][\-][0-9][0-9])?' | sed -e 's/[E]+*/\\*10\\^/'`
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| 128 | if [ "$tstarti" == "" ] || [ "$tstopi" == "" ] || [ "$tstartf" == "" ] || [ "$tstopf" == "" ]
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| 129 | then
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| 130 | printprocesslog "WARN: "$rawfile": one of the following keywords is empty or 0: TSTARTI TSTARTF TSTOPI TSTOPF "
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| 131 | continue
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| 132 | fi
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| 133 | # assuming that at least TSTARTI and TSTOPI are consistent
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| 134 | if [ $tstarti -gt 30000 ]
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| 135 | then
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| 136 | tstart=`echo " $tstarti + $tstartf - 40587 " | bc -l`
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| 137 | tstart2=`echo " $tstarti + $tstartf - 40587 - 0.00011574 " | bc -l` # 10 sec
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| 138 | #tstart2=`echo " $tstarti + $tstartf - 40587 - 0.000023148 " | bc -l` # 2 sec
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| 139 | tstop=`echo " $tstopi + $tstopf - 40587 " | bc -l`
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| 140 | else
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| 141 | tstart=`echo " $tstarti + $tstartf " | bc -l`
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| 142 | tstart2=`echo " $tstarti + $tstartf - 0.00011574 " | bc -l` # 10 sec
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| 143 | #tstart2=`echo " $tstarti + $tstartf - 0.000023148 " | bc -l` # 2 sec
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| 144 | tstop=`echo " $tstopi + $tstopf " | bc -l`
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| 145 | fi
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| 146 |
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| 147 | # build query to update runinfo in DB
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| 148 | query="UPDATE RunInfo SET "
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| 149 |
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| 150 | # get information
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| 151 | if [ -e $threshcurrentsfile ] && [ $threshnumerrors -eq 0 ]
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| 152 | then
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| 153 | thresholds1=( `root -q -b -l fact/processing/threshold.C\("\"$thresholdfile2\""\,$tstart\,$tstop\) | grep "result" | grep -E -o '[0-9]+[.]?[0-9]*'` )
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| 154 | if [ "${thresholds1[0]}" == "" ]
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| 155 | then
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| 156 | query=$query"fThresholdMedMean=NULL"
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| 157 | else
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| 158 | query=$query"fThresholdMedMean="${thresholds1[0]}
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| 159 | fi
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| 160 | if [ "${thresholds1[1]}" == "" ]
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| 161 | then
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| 162 | query=$query", fThresholdMedRms=NULL"
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| 163 | else
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| 164 | query=$query", fThresholdMedRms="${thresholds1[1]}
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| 165 | fi
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| 166 | if [ "${thresholds1[2]}" == "" ]
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| 167 | then
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| 168 | query=$query", fThresholdMax=NULL"
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| 169 | else
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| 170 | query=$query", fThresholdMax="${thresholds1[2]}
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| 171 | fi
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| 172 | if [ "${thresholds1[3]}" == "" ]
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| 173 | then
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| 174 | query=$query", fThresholdAvgMean=NULL"
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| 175 | else
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| 176 | query=$query", fThresholdAvgMean="${thresholds1[3]}
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| 177 | fi
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| 178 | else
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| 179 | query=$query" fThresholdMedMean=NULL"
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| 180 | query=$query", fThresholdMedRms=NULL"
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| 181 | query=$query", fThresholdMax=NULL"
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| 182 | query=$query", fThresholdAvgMean=NULL"
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| 183 | fi
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| 184 |
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| 185 | # get information
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| 186 | if [ -e $threshcurrentsfile2 ] && [ $threshnumerrors2 -eq 0 ]
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| 187 | then
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| 188 | thresholds2=( `root -q -b -l fact/processing/lastth.C\("\"$thresholdfile\""\,$tstart\) | grep "result" | grep -E -o '[0-9]+[.]?[0-9]*'` )
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| 189 | if [ "${thresholds2[0]}" == "" ]
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| 190 | then
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| 191 | query=$query", fThresholdMinSet=NULL"
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| 192 | else
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| 193 | query=$query", fThresholdMinSet="${thresholds2[0]}
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| 194 | fi
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| 195 | if [ "${thresholds2[1]}" == "" ]
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| 196 | then
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| 197 | query=$query", fThresholdMinTimeDiff=NULL"
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| 198 | else
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| 199 | query=$query", fThresholdMinTimeDiff="${thresholds2[1]}
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| 200 | fi
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| 201 | else
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| 202 | query=$query", fThresholdMinSet=NULL"
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| 203 | query=$query", fThresholdMinTimeDiff=NULL"
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| 204 | fi
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| 205 |
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| 206 | # add where condition
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| 207 | query=$query" WHERE fNight="$runnumber" AND fRunID="$filenum
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| 208 |
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| 209 | # send query to DB
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| 210 | sendquery >/dev/null
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| 211 | done
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| 212 | done
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| 213 |
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| 214 | finish
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| 215 |
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| 216 |
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