| 1 | #!/bin/bash
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| 2 | #
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| 3 | source `dirname $0`/../Sourcefile.sh
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| 4 | printprocesslog "INFO starting $0"
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| 5 |
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| 6 | # get date (before 18h there is no new data to be processed)
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| 7 | if [ "$certaindate" != "" ]
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| 8 | then
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| 9 | checkstring=`echo $certaindate | grep -E -o '20[0-9][0-9]\/[01][0-9]\/[0-3][0-9]'`
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| 10 | if [ "$checkstring" = "" ]
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| 11 | then
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| 12 | echo "Please give the variable certaindate in the correct format (YYYY/MM/DD)"
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| 13 | finish
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| 14 | fi
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| 15 | datepath=$certaindate
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| 16 | else
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| 17 | datepath=`date --date="-19HOUR" +%Y/%m/%d`
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| 18 | fi
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| 19 | date=`echo $datepath | sed -e 's/\///g'`
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| 20 | printprocesslog "INFO processing "$datepath
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| 21 |
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| 22 | auxpathnewdaq=/newdaq/aux/$datepath
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| 23 | # create aux directory on daq, if not yet there
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| 24 | auxpath=/loc_data/aux/$datepath
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| 25 | makedir $auxpath
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| 26 | # create path for info files needed for analysis
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| 27 | infopath=$anapath/info/$datepath
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| 28 | makedir $infopath
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| 29 | echo "" > $infopath/runrow.txt
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| 30 | # create path for sequence files
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| 31 | seqpath=$anapath/sequences/$datepath
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| 32 | makedir $seqpath
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| 33 | rawpathnewdaq=/newdaq/raw/$datepath
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| 34 | rawpath=/loc_data/raw/$datepath
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| 35 |
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| 36 | # needed auxiliary files:
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| 37 | # drive file with information about current source position
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| 38 | drivefile=$auxpath/${date}.DRIVE_CONTROL_SOURCE_POSITION.fits
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| 39 | drivefilenewdaq=$auxpathnewdaq/${date}.DRIVE_CONTROL_SOURCE_POSITION.fits
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| 40 | # drive file with information about tracking position
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| 41 | drivefile2=$auxpath/${date}.DRIVE_CONTROL_TRACKING_POSITION.fits
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| 42 | drivefilenewdaq2=$auxpathnewdaq/${date}.DRIVE_CONTROL_TRACKING_POSITION.fits
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| 43 | # file with magic weather information
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| 44 | mweatherfile=$auxpath/${date}.MAGIC_WEATHER_DATA.fits
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| 45 | mweatherfilenewdaq=$auxpathnewdaq/${date}.MAGIC_WEATHER_DATA.fits
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| 46 | # file with trigger rates
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| 47 | ratesfile=$auxpath/${date}.FTM_CONTROL_TRIGGER_RATES.fits
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| 48 | ratesfilenewdaq=$auxpathnewdaq/${date}.FTM_CONTROL_TRIGGER_RATES.fits
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| 49 | # file with trigger rates
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| 50 | tempfile=$auxpath/${date}.FSC_CONTROL_TEMPERATURE.fits
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| 51 | tempfilenewdaq=$auxpathnewdaq/${date}.FSC_CONTROL_TEMPERATURE.fits
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| 52 | # file with trigger rates
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| 53 | humfile=$auxpath/${date}.FSC_CONTROL_HUMIDITY.fits
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| 54 | humfilenewdaq=$auxpathnewdaq/${date}.FSC_CONTROL_HUMIDITY.fits
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| 55 |
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| 56 | function rsync_aux_file()
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| 57 | {
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| 58 | if ls $1 >/dev/null 2>&1
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| 59 | then
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| 60 | printprocesslog "INFO rsync "$1
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| 61 | # rsync
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| 62 | # from newdaq (/newdaq = /fact on newdaq), rsync server newdaq::newdaq/
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| 63 | # to daq (/daq = /loc_data on daq)
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| 64 | rsyncservernewdaq=`echo $1 | sed -e 's/^\//172.16.100.100::/'`
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| 65 | # old
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| 66 | #if ! rsync -a -T $rsynctempdir $1 $2
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| 67 | # new (workaround for problems on daq)
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| 68 | if ! rsync -a -T $rsynctempdir $rsyncservernewdaq $2
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| 69 | then
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| 70 | printprocesslog "WARN rsync of "$1" failed."
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| 71 | fi
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| 72 | else
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| 73 | printprocesslog "WARN "$1" missing."
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| 74 | fi
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| 75 | }
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| 76 |
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| 77 | function check_daq()
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| 78 | {
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| 79 | diskusage=( `df -P /raid10 | grep raid10 ` )
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| 80 | # check if more than 700 GB are left on /loc_data
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| 81 | if [ ${diskusage[3]} -lt $disklimitdaq ]
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| 82 | then
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| 83 | #echo "WARN less than 700 left on /raid10 on node "$HOSTNAME" ("${diskusage[3]}")"
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| 84 | printprocesslog "DISK less than 700 left on /raid10 on node "$HOSTNAME" ("${diskusage[3]}")"
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| 85 | #df -h /raid10
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| 86 | finish
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| 87 | fi
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| 88 | }
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| 89 |
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| 90 | check_daq
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| 91 |
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| 92 | printprocesslog "INFO get lists of raw files on newdaq and daq"
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| 93 | files=( `find $rawpathnewdaq -type f -regex '.*[.]fits[.]?[g]?[f]?[z]?' 2>/dev/null | sort` )
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| 94 | # to treat links use:
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| 95 | #files=( `find -L $rawpathnewdaq -regex '.*[.]fits[.]?[g]?[f]?[z]?' 2>/dev/null | sort` )
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| 96 |
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| 97 | if [ ${#files[@]} -eq 0 ]
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| 98 | then
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| 99 | printprocesslog "INFO no raw files available yet for "$datepath
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| 100 | finish
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| 101 | fi
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| 102 | fileslocal=( `find $rawpath -type f -regex '.*[.]fits[.]?[g]?[f]?[z]?' | sort` )
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| 103 | callistofiles=( `find $anapath/callisto -type f -name $date*-calibration.log | sort` )
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| 104 | # get number of dataruns from DB
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| 105 | query="SELECT Count(*) FROM RunInfo WHERE fNight="$date" AND fRunTypeKey=1"
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| 106 | numdataruns=`sendquery`
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| 107 |
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| 108 | # create raw directory on daq, if not yet there
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| 109 | makedir $rawpath
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| 110 |
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| 111 | #echo "INFO #files-daq:"${#fileslocal[@]}" #files-newdaq:"${#files[@]}" #callisto-logs:"${#callistofiles[@]}" #data-runs:"$numdataruns
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| 112 | printprocesslog "INFO #files-daq:"${#fileslocal[@]}" #files-newdaq:"${#files[@]}" #callisto-logs:"${#callistofiles[@]}" #data-runs:"$numdataruns
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| 113 |
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| 114 | while [ ${#fileslocal[@]} -ne ${#files[@]} ] || [ $numdataruns -ne ${#callistofiles[@]} ] # || [ $numdataruns -ne 0 ] # FIXME: Logik ueberdenken u ueberarb
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| 115 | do
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| 116 | # only continue with script
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| 117 | # when there is more than 10% space on daq
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| 118 | source `dirname $0`/../Sourcefile.sh
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| 119 | check_daq
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| 120 |
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| 121 | numdataruns=0
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| 122 | #echo "INFO #files-daq:"${#fileslocal[@]}" #files-newdaq:"${#files[@]}" #callisto-logs:"${#callistofiles[@]}" #data-runs:"$numdataruns
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| 123 | printprocesslog "INFO status beginning of while-loop #files-daq:"${#fileslocal[@]}" #files-newdaq:"${#files[@]}" #callisto-logs:"${#callistofiles[@]}" #data-runs:"$numdataruns
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| 124 |
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| 125 | rsync_aux_file $drivefilenewdaq $drivefile
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| 126 |
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| 127 | # files on newdaq
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| 128 | for file in ${files[@]}
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| 129 | do
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| 130 | printprocesslog "processing "$file
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| 131 | #echo "processing "$file
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| 132 | localfile=`echo $file | sed -e 's/newdaq/loc_data/'`
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| 133 |
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| 134 | source `dirname $0`/../Sourcefile.sh
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| 135 | # check if file is already transferred
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| 136 | if ! ls $localfile >/dev/null 2>&1
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| 137 | then
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| 138 | # check if it is drs-file
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| 139 | # get stop time from raw-file
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| 140 | if [ "`echo $file | grep -o drs`" == "drs" ]
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| 141 | then
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| 142 | nondrs=`basename $file | sed -e 's/[.]drs//g'`
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| 143 | nondrsfile=`find $rawpath -name $nondrs.*z`
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| 144 | #echo "nondrs: "$nondrsfile
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| 145 | tstop=`$factpath/fitsdump -h $nondrsfile 2>/dev/null | grep TSTOPI | grep -E -o '[0-9]+'`
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| 146 | else
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| 147 | tstop=`$factpath/fitsdump -h $file 2>/dev/null | grep TSTOPI | grep -E -o '[0-9]+'`
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| 148 | fi
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| 149 | #echo "tstop -"$tstop"-"
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| 150 | # when stop time is 0, file is not closed
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| 151 | # when an error is returned the tstop is empty
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| 152 | if [ "$tstop" == "0" ] || [ "$tstop" == "" ]
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| 153 | then
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| 154 | printprocesslog "WARN "$file" not yet closed."
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| 155 | # if a file is not closed and not touched for 30 minutes,
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| 156 | # it is assumed corrupted and still transferred
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| 157 | fileaccessed=`find $file -amin -30`
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| 158 | if ! [ "$fileaccessed" == "" ]
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| 159 | then
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| 160 | printprocesslog "INFO "$file" was accessed in the last 30 minutes => continue"
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| 161 | continue
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| 162 | else
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| 163 | printprocesslog "WARN: "$file" has empty TSTOP but was not touched for 30 minutes"
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| 164 | fileerror="yes"
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| 165 | fi
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| 166 | fi
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| 167 |
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| 168 | # rsync
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| 169 | # from newdaq (/newdaq = /fact on newdaq), rsync server newdaq::newdaq/
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| 170 | # to daq (/daq = /loc_data on daq)
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| 171 | # to access rsync server via the dedicated network between
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| 172 | # daq and newdaq, use 172.16.100.100::newdaq
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| 173 | filersyncserver=`echo $file | sed -e 's/^\//172.16.100.100::/'`
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| 174 | # old
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| 175 | ##if ! rsync -av --stats --progress --bwlimit=$bwlimit $file $localfile
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| 176 | #if ! rsync -a -T $rsynctempdir --bwlimit=$bwlimit $file $localfile
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| 177 | # new
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| 178 | if ! rsync -a -W -T $rsynctempdir --bwlimit=$bwlimit $filersyncserver $localfile
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| 179 | then
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| 180 | printprocesslog "ERROR something went wrong with rsync of "$file
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| 181 | rm $localfile
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| 182 | continue
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| 183 | fi
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| 184 | printprocesslog "INFO "$file" rsynced successfully."
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| 185 | fi
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| 186 |
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| 187 | if [ "`echo $localfile | grep -o drs`" != "drs" ]
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| 188 | then
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| 189 | runtype=`$factpath/fitsdump -h $localfile 2>/dev/null | grep RUNTYPE | grep -E -o "['][a-z0-9._-]+[']" | sed -e "s/'//g" -e "s/_/-/g" -e "s/[.]//g"`
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| 190 | runnum=`echo $localfile | cut -d_ -f3 | cut -d. -f1`
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| 191 | roi=`$factpath/fitsdump -h $localfile 2>/dev/null | grep ROI | grep -v ROITM | grep -E -o "[0-9][0-9][0-9][0-9]?" | sed -e "s/'//g" -e "s/_/-/g" -e "s/[.]//g"`
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| 192 | numevts=`$factpath/fitsdump -h $file 2>/dev/null | grep Events | grep -E -o '[0-9]+'`
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| 193 | printprocesslog "DEBUG runnum "$runnum" runtype "$runtype" roi "$roi" numevts "$numevts
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| 194 | if [ "$runtype" == "drs-time-upshifted" ]
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| 195 | then
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| 196 | printprocesslog "INFO file "$file" has runtype drs-time-upshifted -> continue "
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| 197 | continue
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| 198 | fi
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| 199 | #echo $runtype" "$runnum
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| 200 | if [ "$runtype" == "data" ]
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| 201 | then
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| 202 | if [ "$fileerror" = "yes" ]
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| 203 | then
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| 204 | printprocesslog "INFO do not further process corrupted file "$localfile
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| 205 | fileerror=
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| 206 | continue
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| 207 | fi
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| 208 | seqfile=$seqpath/${date}_${runnum}.seq
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| 209 | printprocesslog "INFO write data-seq "$seqfile
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| 210 | echo "# written by automatic analysis in LP" >$seqfile
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| 211 | echo "" >> $seqfile
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| 212 | echo "Sequence: "`echo $date | cut -c3-8`$runnum >> $seqfile
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| 213 | echo "Night: "`echo $datepath | sed -e 's/\//-/g'` >> $seqfile
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| 214 | echo "" >> $seqfile
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| 215 | echo "DrsSequence: "$drsseq >> $seqfile
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| 216 | echo "" >> $seqfile
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| 217 | # echo $runrow" CalRuns"
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| 218 | # echo $runrow | grep -E -o '[0-9]{3}light-pulser-ext300' | sed -e 's/light-pulser-ext300//g'
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| 219 | echo "CalRuns: "`echo $runrow | grep -E -o '[0-9]{3}light-pulser-ext300' | sed -e 's/light-pulser-ext300//g'` >> $seqfile
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| 220 | echo "PedRuns: "`echo $runrow | grep -E -o '[0-9]{3}pedestal300' | sed -e 's/pedestal300//g'` >> $seqfile
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| 221 | echo "DatRuns: "$runnum >> $seqfile
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| 222 | echo "" >> $seqfile
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| 223 | echo "DrsFiles: "$drsfile >> $seqfile
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| 224 | echo "" >> $seqfile
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| 225 | echo "#DrsFile: "$drsfile >> $seqfile
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| 226 | echo "" >> $seqfile
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| 227 |
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| 228 | # tstopi=`$factpath/fitsdump -h $localfile 2>/dev/null | grep TSTOPI | grep -E -o '[0-9]+'`
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| 229 | # tstopf=`$factpath/fitsdump -h $localfile 2>/dev/null | grep TSTOPF | grep -E -o '[.][0-9]+'`
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| 230 | # tstop=${tstopi}${tstopf}
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| 231 | # coordinates=( `${factpath}/fitsdump ${drivefile} -c Ra_src Dec_src -r --filter='Time<'${tstop} 2>/dev/null | tail -1 2>&1` )
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| 232 | # if [ "${coordinates[0]}" == "" ] || [ "${coordinates[1]}" == "" ]
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| 233 | # then
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| 234 | # printprocesslog "WARN couldn't get coordinates ("${coordinates[@]}") from "$drivefile
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| 235 | # #echo "WARN couldn't get coordinates ("${coordinates[@]}") from "$drivefile
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| 236 | # continue
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| 237 | # fi
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| 238 | # if [ "${coordinates[0]}" == "0" ] || [ "${coordinates[1]}" == "0" ]
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| 239 | # then
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| 240 | # printprocesslog "WARN coordinates "${coordinates[@]}
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| 241 | # #echo "WARN coordinates "${coordinates[@]}
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| 242 | # continue
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| 243 | # fi
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| 244 | # printprocesslog "DEBUG coordinates "${coordinates[@]}
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| 245 | # query="SELECT fSourceKEY FROM scheduling.source WHERE "
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| 246 | # query=$query" fRightAscension BETWEEN "${coordinates[0]}"-0.01 AND "${coordinates[0]}"+0.01 "
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| 247 | # query=$query" AND fDeclination BETWEEN "${coordinates[1]}"-0.01 AND "${coordinates[1]}"+0.01 "
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| 248 | # sourcekey=`sendquery`
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| 249 | # if [ "$sourcekey" == "" ]
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| 250 | # then
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| 251 | # printprocesslog "WARN sourcekey empty - coordinates"${coordinates[@]}
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| 252 | # fi
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| 253 |
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| 254 | printprocesslog "INFO counting callisto logs and data files +1."
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| 255 | # get number of callisto logs
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| 256 | runcallistocount=`ps aux | grep RunCallisto | grep -E -o '20[12][0-9][01][0-9][0-3][0-9]_[0-9][0-9][0-9]' | sort | uniq | wc -l`
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| 257 | # count data runs
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| 258 | numdataruns=`echo " $numdataruns + 1 " | bc -l`
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| 259 | #echo "numdata +1"
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| 260 |
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| 261 | #echo "cal: "$runcallistocount" numdat: "$numdataruns" numcallog: "${#callistofiles[@]}
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| 262 | printprocesslog "INFO running callistos: "$runcallistocount" #data-runs: "$numdataruns" #callisto-logs: "${#callistofiles[@]}
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| 263 | # do not overload system in case of a lot of files to be processed
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| 264 | # numruncallistos is set in setup.fact.lp.data
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| 265 | if [ $runcallistocount -ge $numruncallistos ]
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| 266 | then
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| 267 | printprocesslog "INFO "$runcallistocount" RunCallisto.sh are running -> continue"
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| 268 | #echo "INFO "$runcallistocount" RunCallisto.sh are running -> continue"
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| 269 | continue
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| 270 | fi
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| 271 | callistolog=`dirname $seqfile | sed -e "s/sequences/callisto/"`"/"$date"_"$runnum"-calibration.log"
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| 272 | if ! [ -e $callistolog ]
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| 273 | then
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| 274 | rsync_aux_file $drivefilenewdaq2 $drivefile2
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| 275 | rsync_aux_file $mweatherfilenewdaq $mweatherfile
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| 276 | rsync_aux_file $ratesfilenewdaq $ratesfile
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| 277 | rsync_aux_file $tempfilenewdaq $tempfile
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| 278 | rsync_aux_file $humfilenewdaq $humfile
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| 279 | #printprocesslog "INFO starting RunCallisto.sh for "$sourcekey" "$seqfile
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| 280 | #echo "INFO starting RunCallisto.sh for "$sourcekey" "$seqfile
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| 281 | #`dirname $0`/RunCallisto.sh $sourcekey $seqfile &
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| 282 | printprocesslog "INFO starting RunCallisto.sh for "$seqfile
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| 283 | #echo "INFO starting RunCallisto.sh for "$seqfile
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| 284 | `dirname $0`/RunCallisto.sh $seqfile &
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| 285 | fi
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| 286 | continue
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| 287 | else
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| 288 | # skip a non-data run when it has not 1000 evts
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| 289 | # as this means probably an fad-loss
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| 290 | if [ $numevts -ne 1000 ]
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| 291 | then
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| 292 | printprocesslog "INFO file "$file" is a non-data file ("$runtype") and has not 1000 events ("$numevts")"
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| 293 | continue
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| 294 | fi
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| 295 | fi
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| 296 | printprocesslog "DEBUG runrow "$runrow" (from variable) "
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| 297 | runrow=`cat $infopath/runrow.txt`
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| 298 | printprocesslog "DEBUG runrow "$runrow" (from file) "
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| 299 | runrow=$runrow$runnum$runtype$roi"_"
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| 300 | echo $runrow > $infopath/runrow.txt
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| 301 | if echo $runrow | grep -E '[0-9]{3}drs-pedestal1024_[0-9]{3}drs-gain1024_[0-9]{3}drs-pedestal1024_[0-9]{3}drs-pedestal1024_[0-9]{3}drs-time1024_[0-9]{3}pedestal300_[0-9]{3}pedestal300_' >/dev/null
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| 302 | then
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| 303 | runrow2=`echo $runrow | grep -E -o '[0-9]{3}drs-pedestal1024_[0-9]{3}drs-gain1024_[0-9]{3}drs-pedestal1024_[0-9]{3}drs-pedestal1024_[0-9]{3}drs-time1024_[0-9]{3}pedestal300_[0-9]{3}pedestal300_'`
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| 304 | run1=`echo $runrow2 | cut -d_ -f1 | sed -e 's/drs-pedestal1024//g'`
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| 305 | run2=`echo $runrow2 | cut -d_ -f2 | sed -e 's/drs-gain1024//g'`
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| 306 | run3=`echo $runrow2 | cut -d_ -f3 | sed -e 's/drs-pedestal1024//g'`
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| 307 | run4=`echo $runrow2 | cut -d_ -f4 | sed -e 's/drs-pedestal1024//g'`
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| 308 | run5=`echo $runrow2 | cut -d_ -f5 | sed -e 's/drs-time1024//g'`
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| 309 | run6=`echo $runrow2 | cut -d_ -f6 | sed -e 's/pedestal300//g'`
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| 310 | run7=`echo $runrow2 | cut -d_ -f7 | sed -e 's/pedestal300//g'`
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| 311 | seqfile=$seqpath/${date}_${run1}.drs.seq
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| 312 | printprocesslog "INFO write drs-seq "$seqfile
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| 313 | echo "# written by automatic analysis in LP" > $seqfile
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| 314 | echo "" >> $seqfile
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| 315 | echo "Sequence: "`echo $date | cut -c3-8`$run1 >> $seqfile
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| 316 | echo "Night: "`echo $datepath | sed -e 's/\//-/g'` >> $seqfile
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| 317 | echo "" >> $seqfile
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| 318 | echo "CalRuns: "$run2 >> $seqfile
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| 319 | echo "PedRuns: "$run6" "$run7 >> $seqfile
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| 320 | echo "DatRuns: "$run5 >> $seqfile
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| 321 | echo "DrsRuns: "$run1" "$run3" "$run4 >> $seqfile
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| 322 | echo "DrsFiles: "$run3" "$run6 >> $seqfile
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| 323 | echo "" >> $seqfile
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| 324 | echo "#DrsFile: "$run6 >> $seqfile
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| 325 | echo "" >> $seqfile
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| 326 | echo "" > $infopath/runrow.txt
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| 327 | drsseq=$run1
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| 328 | drsfile=$run6
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| 329 | fi
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| 330 | if echo $runrow | grep -E '[0-9]{3}pedestal300_[0-9]{3}light-pulser-ext300_' >/dev/null
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| 331 | then
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| 332 | echo "" > $infopath/runrow.txt
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| 333 | fi
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| 334 | fi
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| 335 | done
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| 336 | printprocesslog "INFO status after loop: "$runcallistocount" callistos running, "$numdataruns" data runs to process in total, "${#callistofiles[@]}" have already a callisto-logfile "
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| 337 |
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| 338 | # get new file lists
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| 339 | printprocesslog "INFO get new file lists for "$datepath
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| 340 | files=( `find $rawpathnewdaq -type f -regex '.*[.]fits[.]?[g]?[f]?[z]?' | sort` )
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| 341 | fileslocal=( `find $rawpath -type f -regex '.*[.]fits[.]?[g]?[f]?[z]?' | sort` )
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| 342 | callistofiles=( `find $anapath/callisto -type f -name $date*-calibration.log | sort` )
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| 343 | #echo "INFO #files-daq:"${#fileslocal[@]}" #files-newdaq:"${#files[@]}" #callisto-logs:"${#callistofiles[@]}" #data-runs:"$numdataruns
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| 344 | printprocesslog "INFO status after for-loop #files-daq:"${#fileslocal[@]}" #files-newdaq:"${#files[@]}" #callisto-logs:"${#callistofiles[@]}" #data-runs:"$numdataruns
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| 345 |
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| 346 | # wait and get new file lists
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| 347 | update=
|
|---|
| 348 | if [ ${#fileslocal[@]} -eq ${#files[@]} ]
|
|---|
| 349 | then
|
|---|
| 350 | printprocesslog "INFO wait 60 seconds."
|
|---|
| 351 | sleep 60
|
|---|
| 352 | #echo "sleep 60..."
|
|---|
| 353 | printprocesslog "INFO get new file lists for "$datepath
|
|---|
| 354 | files=( `find $rawpathnewdaq -type f -regex '.*[.]fits[.]?[g]?[f]?[z]?' | sort` )
|
|---|
| 355 | fileslocal=( `find $rawpath -type f -regex '.*[.]fits[.]?[g]?[f]?[z]?' | sort` )
|
|---|
| 356 | callistofiles=( `find $anapath/callisto -type f -name $date*-calibration.log | sort` )
|
|---|
| 357 | fi
|
|---|
| 358 | #echo "INFO #files-daq:"${#fileslocal[@]}" #files-newdaq:"${#files[@]}" #callisto-logs:"${#callistofiles[@]}" #data-runs:"$numdataruns
|
|---|
| 359 | printprocesslog "INFO status after wait end of while-loop #files-daq:"${#fileslocal[@]}" #files-newdaq:"${#files[@]}" #callisto-logs:"${#callistofiles[@]}" #data-runs:"$numdataruns
|
|---|
| 360 |
|
|---|
| 361 | # this should not happen, but may in rare cases if data are deleted in the wrong order
|
|---|
| 362 | if [ ${#files[@]} -lt ${#fileslocal[@]} ]
|
|---|
| 363 | then
|
|---|
| 364 | printprocesslog "ERROR numfiles on newdaq("${#files[@]}") < #files on daq ("${#fileslocal[@]}") - maybe deleting data in the wrong order?"
|
|---|
| 365 | echo "ERROR numfiles on newdaq("${#files[@]}") < #files on daq ("${#fileslocal[@]}") - maybe deleting data in the wrong order?"
|
|---|
| 366 | finish
|
|---|
| 367 | fi
|
|---|
| 368 | done
|
|---|
| 369 |
|
|---|
| 370 |
|
|---|
| 371 |
|
|---|
| 372 |
|
|---|
