1 | #!/bin/bash
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2 | #
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3 |
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4 | # to use script with /data1 instead of /scratch
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5 | # (e.g. when /scratch is full)
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6 | # export data1=yes
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7 | # before executing the script
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8 | # preferably ZipRawData.sh has processed at this point all
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9 | # files available already on /scratch
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10 | #
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11 | # to have QLA running if MAGIC weather station is not available:
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12 | # export mweather=no
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13 |
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14 | # remarks:
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15 | # move fileerror check to main-loop?
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16 |
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17 | source `dirname $0`/../Sourcefile.sh
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18 | printprocesslog "INFO starting $0"
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19 |
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20 | # get date (before 18h there is no new data to be processed)
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21 | if [ "$certaindate" != "" ]
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22 | then
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23 | checkstring=`echo $certaindate | grep -E -o '^20[0-9][0-9]\/[01][0-9]\/[0-3][0-9]$'`
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24 | if [ "$checkstring" = "" ]
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25 | then
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26 | echo "Please give the variable certaindate in the correct format (YYYY/MM/DD)"
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27 | finish
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28 | fi
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29 | datepath=$certaindate
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30 | else
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31 | # this has to be coordinated with the time when
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32 | # ClearNewdata.sh is running
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33 | datepath=`date --date="-18HOUR" +%Y/%m/%d`
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34 | fi
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35 | date=`echo $datepath | sed -e 's/\///g'`
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36 | printprocesslog "INFO processing "$datepath
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37 |
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38 | auxpath=/loc_data/aux/$datepath
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39 | makedir $auxpath >/dev/null
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40 | # create path for info files needed for analysis
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41 | infopath=$anapath/info/$datepath
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42 | makedir $infopath >/dev/null
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43 | echo "" > $infopath/runrow.txt
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44 | # create path for callisto output
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45 | calpath=$anapath/callisto/$datepath
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46 | makedir $calpath >/dev/null
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47 | rawpathnewdaq=/newdaq/raw/$datepath
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48 | if [ "$data1" = "yes" ]
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49 | then
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50 | rawpath=/data1/raw/$datepath
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51 | rsynctempdir=/data1/rsync_tmp
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52 | printprocesslog "INFO using "$rawpath" for processing"
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53 | else
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54 | rawpath=/scratch/raw/$datepath
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55 | rsynctempdir=/scratch/rsync_tmp
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56 | fi
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57 | if ! [ -d $rsynctempdir ]
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58 | then
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59 | mkdir $rsynctempdir
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60 | fi
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61 |
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62 |
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63 |
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64 | # needed auxiliary files:
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65 | # drive file with information about current source position
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66 | drivefile=$auxpath/${date}.DRIVE_CONTROL_SOURCE_POSITION.fits
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67 | # drive file with information tracking position
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68 | drivefile2=$auxpath/${date}.DRIVE_CONTROL_TRACKING_POSITION.fits
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69 | # file with magic weather information
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70 | mweatherfile=$auxpath/${date}.MAGIC_WEATHER_DATA.fits
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71 | # file with trigger rates
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72 | ratesfile=$auxpath/${date}.FTM_CONTROL_TRIGGER_RATES.fits
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73 | # file with trigger rates
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74 | tempfile=$auxpath/${date}.FSC_CONTROL_TEMPERATURE.fits
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75 | # file with trigger rates
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76 | humfile=$auxpath/${date}.FSC_CONTROL_HUMIDITY.fits
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77 |
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78 | function rsync_aux_file()
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79 | {
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80 | if check_file_avail $1
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81 | then
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82 | printprocesslog "INFO rsync "$1
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83 | if ! rsync -a -T $rsynctempdir newdaq:$1 $1
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84 | then
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85 | printprocesslog "WARN rsync of "$1" failed."
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86 | fi
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87 | else
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88 | continue
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89 | fi
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90 | }
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91 |
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92 | function check_disks()
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93 | {
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94 | # at least 5% free disk on /data1
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95 | diskusage=( `df -P /data1 | grep data1 ` )
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96 | if [ ${diskusage[3]} -lt $disklimitnewdata2 ]
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97 | then
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98 | echo "WARN less than 5% left on /data1 on node "$HOSTNAME
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99 | printprocesslog "WARN less than 5% left on /data1 on node "$HOSTNAME
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100 | df -h /data1
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101 | finish
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102 | fi
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103 |
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104 | # if /data1 is used for processing, /scratch doesn't need to be checked
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105 | if [ "$data1" = "yes" ]
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106 | then
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107 | return
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108 | fi
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109 |
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110 | # at least 10% free disk on /scratch
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111 | diskusage=( `df -P /scratch | grep scratch ` )
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112 | printprocesslog "DEBUG dist /scratch "${diskusage[3]}
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113 | if [ ${diskusage[3]} -lt $disklimitnewdata ]
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114 | then
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115 | echo "WARN less than 10% left on /scratch on node "$HOSTNAME
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116 | printprocesslog "WARN less than 10% left on /scratch on node "$HOSTNAME
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117 | df -h /scratch
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118 | finish
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119 | fi
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120 | }
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121 |
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122 | check_disks
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123 |
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124 | # getting lists of files
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125 | printprocesslog "INFO get lists of raw files on newdaq and daq"
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126 | #files=( `ssh newdaq "find $rawpath -type f -regex '.*20[0-9][0-9][01][0-9][0-3][0-9][_][0-9][0-9][0-9][.]d?r?s?[.]?fits[.]?[g]?[f]?[z]?' 2>/dev/null | sort "` )
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127 | files=( `find $rawpathnewdaq -type f -regex '.*20[0-9][0-9][01][0-9][0-3][0-9][_][0-9][0-9][0-9][.]d?r?s?[.]?fits[.]?[g]?[f]?[z]?' 2>/dev/null | sort ` )
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128 | if [ ${#files[@]} -eq 0 ]
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129 | then
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130 | printprocesslog "INFO no raw files available yet for "$datepath
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131 | finish
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132 | fi
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133 | fileslocal=( `find $rawpath -type f -regex '.*20[0-9][0-9][01][0-9][0-3][0-9][_][0-9][0-9][0-9][.]d?r?s?[.]?fits[.]?[g]?[f]?[z]?' 2>/dev/null | sort` )
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134 | callistofiles=( `find $calpath -type f -name $date*-calibration.log 2>/dev/null | sort` )
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135 |
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136 | # get number of runs from DB
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137 | query="SELECT Count(*) FROM RunInfo WHERE fNight="$date" AND fRunTypeKey in (1, 18)" # data and grb
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138 | numdataruns=`sendquery`
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139 | query="SELECT Count(*) FROM RunInfo WHERE fNight="$date" AND fRunTypeKey=6"
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140 | numlpruns=`sendquery`
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141 | query="SELECT Count(*) FROM RunInfo WHERE fNight="$date" AND fRunTypeKey=2 AND fHasDrsFile=1 AND fROI=300"
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142 | numpedruns=`sendquery`
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143 | query="SELECT Count(*) FROM RunInfo WHERE fNight="$date" AND fRunTypeKey=5"
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144 | numdrstime=`sendquery`
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145 | numpedruns=0
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146 | #numcalibrated=`echo " $numdataruns + $numlpruns + $numpedruns + $numdrstime " | bc -l`
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147 | numcalibrated=`echo " $numdataruns + $numdrstime " | bc -l`
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148 |
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149 | # create raw directory on daq, if not yet there
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150 | makedir $rawpath >/dev/null
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151 |
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152 | #echo "INFO #files-local:"${#fileslocal[@]}" #files-newdaq:"${#files[@]}" #callisto-logs:"${#callistofiles[@]}" #runs:"$numcalibrated
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153 | printprocesslog "INFO #files-local:"${#fileslocal[@]}" #files-newdaq:"${#files[@]}" #callisto-logs:"${#callistofiles[@]}" #runs:"$numcalibrated
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154 |
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155 | while [ ${#fileslocal[@]} -ne ${#files[@]} ] || [ $numcalibrated -ne ${#callistofiles[@]} ] # || [ $numcalibrated -ne 0 ] # FIXME: Logik ueberdenken u ueberarb
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156 | do
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157 | # only continue with script
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158 | # when there is more than 10% space on daq
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159 | source `dirname $0`/../Sourcefile.sh
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160 |
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161 | numcalibrated=0
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162 | #echo "INFO #files-daq:"${#fileslocal[@]}" #files-newdaq:"${#files[@]}" #callisto-logs:"${#callistofiles[@]}" #runs:"$numcalibrated
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163 | printprocesslog "INFO status beginning of while-loop #files-daq:"${#fileslocal[@]}" #files-newdaq:"${#files[@]}" #callisto-logs:"${#callistofiles[@]}" #runs:"$numcalibrated
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164 |
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165 | #rsync_aux_file $drivefile
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166 | #rsync_aux_file $drivefile2
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167 |
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168 | # files on newdaq
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169 | for file in ${files[@]}
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170 | do
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171 | # check if still enough diskspace for transfer
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172 | check_disks
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173 | if [ "$certaindate" != "" ]
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174 | then
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175 | echo "processing "$file
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176 | fi
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177 | printprocesslog "processing "$file
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178 | if [ "$data1" = "yes" ]
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179 | then
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180 | localfile=`echo $file | sed -e 's/newdaq/data1/'`
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181 | else
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182 | localfile=`echo $file | sed -e 's/newdaq/scratch/'`
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183 | fi
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184 | #localfile=$file
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185 |
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186 | source `dirname $0`/../Sourcefile.sh
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187 |
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188 | # check if file is already transferred
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189 | if ! ls $localfile >/dev/null 2>&1
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190 | then
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191 | # check if it is drs-file
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192 | # get stop time from raw-file
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193 | if [ "`echo $file | grep -o drs`" == "drs" ]
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194 | then
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195 | nondrs=`basename $file | sed -e 's/[.]drs//g'`
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196 | nondrsfile=`find -L $rawpath -name $nondrs.*z 2>/dev/null `
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197 | tstop=`$factpath/fitsdump -h $nondrsfile 2>/dev/null | grep TSTOPI | grep -E -o '[0-9]+'`
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198 | else
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199 | tstop=`$factpath/fitsdump -h $file 2>/dev/null | grep TSTOPI | grep -E -o '[0-9]+'`
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200 | fi
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201 | # when stop time is 0, file is not closed
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202 | # when an error is returned the tstop is empty
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203 | if [ "$tstop" == "0" ] || [ "$tstop" == "" ]
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204 | then
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205 | printprocesslog "DEBUG "$file" not yet closed."
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206 | # if a file is not closed and not touched for 30 minutes,
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207 | # it is assumed corrupted and still transferred
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208 | fileaccessed=`find $file -amin -30 2>/dev/null `
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209 | if ! [ "$fileaccessed" == "" ]
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210 | then
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211 | printprocesslog "INFO "$file" was accessed in the last 30 minutes => continue"
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212 | continue
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213 | else
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214 | printprocesslog "WARN: "$file" has empty TSTOP but was not touched for 30 minutes"
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215 | fileerror="yes"
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216 | fi
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217 | fi
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218 |
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219 | # rsync
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220 | #if ! rsync -au -T $rsynctempdir --bwlimit=$bwlimit newdaq:$file $localfile
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221 | if ! rsync -au -T $rsynctempdir --bwlimit=$bwlimit $file $localfile
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222 | then
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223 | printprocesslog "ERROR something went wrong with rsync of "$file
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224 | rm $localfile
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225 | continue
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226 | fi
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227 | printprocesslog "INFO "$file" rsynced successfully."
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228 | fi
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229 |
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230 | # for .drs.fits files no further treatment needed
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231 | if [ "`echo $localfile | grep -o drs`" == "drs" ]
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232 | then
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233 | continue
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234 | fi
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235 |
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236 | # # temporary check (needed to run on newdaq)
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237 | # if [ "`echo $file | grep -o drs`" == "drs" ]
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238 | # then
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239 | # nondrs=`basename $file | sed -e 's/[.]drs//g'`
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240 | # nondrsfile=`find -L $rawpath -name $nondrs.*z 2>/dev/null `
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241 | # tstop=`$factpath/fitsdump -h $nondrsfile 2>/dev/null | grep TSTOPI | grep -E -o '[0-9]+'`
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242 | # else
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243 | # tstop=`$factpath/fitsdump -h $file 2>/dev/null | grep TSTOPI | grep -E -o '[0-9]+'`
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244 | # fi
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245 | # # when stop time is 0, file is not closed
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246 | # # when an error is returned the tstop is empty
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247 | # if [ "$tstop" == "0" ] || [ "$tstop" == "" ]
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248 | # then
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249 | # printprocesslog "WARN "$file" not yet closed. -> continue (temporary check)"
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250 | # continue
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251 | # fi
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252 | # # end temporary check
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253 |
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254 | # treat other files (.fits.fz)
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255 | runtype=`$factpath/fitsdump -h $localfile 2>/dev/null | grep RUNTYPE | grep -E -o "['][a-z0-9._-]+[']" | sed -e "s/'//g" -e "s/_/-/g" -e "s/[.]//g"`
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256 | if [ "$runtype" != "data" ] && [ "$runtype" != "grb" ]
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257 | then
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258 | # skip a non-data run when it has not 1000 evts
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259 | # as this means probably an fad-loss
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260 | # and these runs are repeated in that case
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261 | numevts=`$factpath/fitsdump -h $file 2>/dev/null | grep Events | grep -E -o '[0-9]+'`
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262 | if [ "$numevts" == "" ]
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263 | then
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264 | printprocesslog "WARN could not get number of events from file "$file" -> continue "
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265 | #echo "WARN could not get number of events from file "$file" -> continue "
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266 | continue
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267 | fi
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268 | if [ $numevts -ne 1000 ]
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269 | then
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270 | printprocesslog "INFO file "$file" is a non-data file ("$runtype") and has not 1000 events ("$numevts")"
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271 | continue
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272 | fi
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273 | fi
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274 |
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275 | # get run number
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276 | runnum=`basename $localfile | cut -d_ -f2 | cut -d. -f1`
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277 |
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278 | # what is needed to process the different runs?
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279 | # P: run#(P), run#(drs-file)
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280 | # C: run#(C), run#(drs-file), run#(drs-time)
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281 | # D: run#(D), run#(drs-file), run#(drs-time), ?
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282 | # what is drs-file? pedestal, roi300, has drs.fits
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283 | callistolog=$calpath"/"$date"_"$runnum"-calibration.log"
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284 | case $runtype in
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285 | data|grb) # treat D-runs
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286 | if [ "$fileerror" = "yes" ]
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287 | then
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288 | printprocesslog "INFO do not further process corrupted file "$localfile
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289 | fileerror=
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290 | continue
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291 | fi
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292 |
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293 | # some accounting
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294 | printprocesslog "DEBUG counting callisto logs and set data files +1."
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295 | # get number of callisto logs
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296 | runcallistocount=`ps aux | grep RunCallisto | grep -E -o '20[12][0-9][01][0-9][0-3][0-9]_[0-9][0-9][0-9]' | sort | uniq | wc -l`
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297 | # count runs to be calibrated
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298 | numcalibrated=`echo " $numcalibrated + 1 " | bc -l`
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299 | printprocesslog "DEBUG running callistos: "$runcallistocount" #runs: "$numcalibrated" #callisto-logs: "${#callistofiles[@]}
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300 |
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301 | # do not overload system in case of a lot of files to be processed
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302 | # numruncallistos is set in setup.fact.lp.data
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303 | if [ $runcallistocount -ge $numruncallistos ]
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304 | then
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305 | printprocesslog "INFO "$runcallistocount" RunCallisto.sh are running -> continue"
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306 | continue
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307 | fi
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308 |
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309 | # starting calibration
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310 | if ! [ -e $callistolog ]
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311 | then
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312 | rsync_aux_file $drivefile
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313 | rsync_aux_file $drivefile2
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314 | if [ "$mweather" != "no" ]
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315 | then
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316 | rsync_aux_file $mweatherfile
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317 | fi
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318 | rsync_aux_file $ratesfile
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319 | rsync_aux_file $tempfile
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320 | rsync_aux_file $humfile
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321 |
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322 | calfile=$calpath"/"$date"_"$runnum"_C.root"
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323 | printprocesslog "INFO starting RunCallisto.sh for drun "$localfile" logfile "$callistolog" drs-calib "$drscalib" outpath "$outpath" calfile "$calfile
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324 | `dirname $0`/RunCallisto.sh "drun" $callistolog $localfile $drscalib $calpath $calfile &
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325 | fi
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326 | continue
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327 | ;;
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328 | pedestal) # treat P-runs
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329 | roi=`$factpath/fitsdump -h $localfile 2>/dev/null | grep ROI | grep -v ROITM | grep -E -o "[0-9][0-9][0-9][0-9]?" | sed -e "s/'//g" -e "s/_/-/g" -e "s/[.]//g"`
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330 | if [ $roi -eq 300 ]
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331 | then
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332 | # check drs-file
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333 | drsfile=`echo $localfile | sed -e 's/[.]fits[.]fz/.drs.fits/g'`
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334 | if [ -e $drsfile ]
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335 | then
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336 | # set name of drs-file
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337 | drscalib=$drsfile
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338 | continue
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339 | #else
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340 | # not needed for QLA
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341 | #numcalibrated=`echo " $numcalibrated + 1 " | bc -l`
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342 | #if ! [ -e $callistolog ]
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343 | #then
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344 | # pedfile=$calpath"/"$date"_"$runnum"-pedestal.root"
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345 | # # count runs to be calibrated
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346 | # printprocesslog "INFO starting RunCallisto.sh for prun "$localfile" logfile "$callistolog" drs-calib "$drscalib" pedfile "$pedfile
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347 | # echo "INFO starting RunCallisto.sh for prun "$localfile" logfile "$callistolog" drs-calib "$drscalib" pedfile "$pedfile
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348 | # `dirname $0`/RunCallisto.sh "prun" $callistolog $localfile $drscalib $pedfile &
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349 | #fi
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350 | fi
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351 | fi
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352 | ;;
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353 | light-pulser-ext) # treat C-runs
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354 | # do lp-treatment -> not needed for QLA
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355 | #lpfile=$calpath"/"$date"_"$runnum"-lightpulser.root"
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356 | #numcalibrated=`echo " $numcalibrated + 1 " | bc -l`
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357 | #if ! [ -e $callistolog ]
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358 | #then
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359 | # if [ -e $drstime ]
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360 | # then
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361 | # # count runs to be calibrated
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362 | # printprocesslog "INFO starting RunCallisto.sh for crun "$localfile" logfile "$callistolog" drs-calib "$drscalib" drs-time "$drstime" lpfile "$lpfile
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363 | # echo "INFO starting RunCallisto.sh for crun "$localfile" logfile "$callistolog" drs-calib "$drscalib" drs-time "$drstime" lpfile "$lpfile
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364 | # `dirname $0`/RunCallistoNew.sh "crun" $callistolog $localfile $drscalib $drstime $lpfile &
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365 | # fi
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366 | #fi
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367 | ;;
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368 | drs-time) # treat drs-time runs
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369 | # do drs-timing calibration
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370 | drstime=$calpath"/"$date"_"$runnum"-drstime.root"
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371 | # starting calibration
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372 | numcalibrated=`echo " $numcalibrated + 1 " | bc -l`
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373 | if ! [ -e $callistolog ]
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374 | then
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375 | # count runs to be calibrated
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376 | printprocesslog "INFO starting RunCallisto.sh for time "$localfile" logfile "$callistolog" drs-ped "$drsped" drstime "$drstime
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377 | #echo "INFO starting RunCallisto.sh for time "$localfile" logfile "$callistolog" drs-ped "$drsped" drstime "$drstime
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378 | `dirname $0`/RunCallisto.sh "time" $callistolog $localfile $drsped $drstime &
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379 | fi
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380 | ;;
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381 | drs-pedestal) # get drs-pedestal
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382 | roi=`$factpath/fitsdump -h $localfile 2>/dev/null | grep ROI | grep -v ROITM | grep -E -o "[0-9][0-9][0-9][0-9]?" | sed -e "s/'//g" -e "s/_/-/g" -e "s/[.]//g"`
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383 | drs=`$factpath/fitsdump -h $localfile 2>/dev/null | grep DRSCALIB | grep -E -o " T " `
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384 | if [ $roi -eq 1024 ] && [ "$drs" == " T " ]
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385 | then
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386 | drsped=`echo $localfile | sed -e 's/[.]fits[.]fz/.drs.fits/g'`
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387 | fi
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388 | ;;
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389 | *) # other runs
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390 | printprocesslog "INFO file "$file" has runtype "$runtype" -> continue "
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391 | continue
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392 | ;;
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393 | esac
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394 | done
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395 | printprocesslog "INFO status after loop: "$runcallistocount" callistos running, "$numcalibrated" data runs to process in total, "${#callistofiles[@]}" have already a callisto-logfile "
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396 |
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397 | # get new file lists
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398 | printprocesslog "INFO get new file lists for "$datepath
|
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399 | #files=( `ssh newdaq "find $rawpath -type f -regex '.*20[0-9][0-9][01][0-9][0-3][0-9][_][0-9][0-9][0-9][.]d?r?s?[.]?fits[.]?[g]?[f]?[z]?' 2>/dev/null | sort "` )
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400 | files=( `find $rawpathnewdaq -type f -regex '.*20[0-9][0-9][01][0-9][0-3][0-9][_][0-9][0-9][0-9][.]d?r?s?[.]?fits[.]?[g]?[f]?[z]?' 2>/dev/null | sort ` )
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401 | fileslocal=( `find $rawpath -type f -regex '.*20[0-9][0-9][01][0-9][0-3][0-9][_][0-9][0-9][0-9][.]d?r?s?[.]?fits[.]?[g]?[f]?[z]?' 2>/dev/null | sort` )
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402 | callistofiles=( `find $calpath -type f -name $date*-calibration.log 2>/dev/null | sort` )
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403 | #echo "INFO #files-daq:"${#fileslocal[@]}" #files-newdaq:"${#files[@]}" #callisto-logs:"${#callistofiles[@]}" #runs:"$numcalibrated
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404 | printprocesslog "INFO status after for-loop #files-daq:"${#fileslocal[@]}" #files-newdaq:"${#files[@]}" #callisto-logs:"${#callistofiles[@]}" #runs:"$numcalibrated
|
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405 |
|
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406 | # wait and get new file lists
|
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407 | update=
|
---|
408 | if [ ${#fileslocal[@]} -eq ${#files[@]} ]
|
---|
409 | then
|
---|
410 | printprocesslog "INFO wait 60 seconds."
|
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411 | sleep 60
|
---|
412 | printprocesslog "INFO get new file lists for "$datepath
|
---|
413 | #files=( `ssh newdaq "find $rawpath -type f -regex '.*20[0-9][0-9][01][0-9][0-3][0-9][_][0-9][0-9][0-9][.]d?r?s?[.]?fits[.]?[g]?[f]?[z]?' 2>/dev/null | sort "` )
|
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414 | files=( `find $rawpathnewdaq -type f -regex '.*20[0-9][0-9][01][0-9][0-3][0-9][_][0-9][0-9][0-9][.]d?r?s?[.]?fits[.]?[g]?[f]?[z]?' 2>/dev/null | sort ` )
|
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415 | fileslocal=( `find $rawpath -type f -regex '.*20[0-9][0-9][01][0-9][0-3][0-9][_][0-9][0-9][0-9][.]d?r?s?[.]?fits[.]?[g]?[f]?[z]?' 2>/dev/null | sort` )
|
---|
416 | callistofiles=( `find $calpath -type f -name $date*-calibration.log 2>/dev/null | sort` )
|
---|
417 | fi
|
---|
418 | #echo "INFO #files-daq:"${#fileslocal[@]}" #files-newdaq:"${#files[@]}" #callisto-logs:"${#callistofiles[@]}" #runs:"$numcalibrated
|
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419 | printprocesslog "INFO status after wait end of while-loop #files-daq:"${#fileslocal[@]}" #files-newdaq:"${#files[@]}" #callisto-logs:"${#callistofiles[@]}" #runs:"$numcalibrated
|
---|
420 | sleep 30
|
---|
421 | printprocesslog "INFO sleep 30"
|
---|
422 | done
|
---|
423 |
|
---|
424 |
|
---|
425 | finish
|
---|