| 1 | #!/bin/bash
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| 2 | #
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| 3 |
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| 4 | # to use script with /data1 instead of /scratch
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| 5 | # (e.g. when /scratch is full)
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| 6 | # export data1=yes
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| 7 | # before executing the script
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| 8 | # preferably ZipRawData.sh has processed at this point all
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| 9 | # files available already on /scratch
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| 10 |
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| 11 | # remarks:
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| 12 | # move fileerror check to main-loop?
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| 13 |
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| 14 | source `dirname $0`/../Sourcefile.sh
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| 15 | printprocesslog "INFO starting $0"
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| 16 |
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| 17 | # get date (before 18h there is no new data to be processed)
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| 18 | if [ "$certaindate" != "" ]
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| 19 | then
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| 20 | checkstring=`echo $certaindate | grep -E -o '^20[0-9][0-9]\/[01][0-9]\/[0-3][0-9]$'`
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| 21 | if [ "$checkstring" = "" ]
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| 22 | then
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| 23 | echo "Please give the variable certaindate in the correct format (YYYY/MM/DD)"
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| 24 | finish
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| 25 | fi
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| 26 | datepath=$certaindate
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| 27 | else
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| 28 | # this has to be coordinated with the time when
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| 29 | # ClearNewdata.sh is running
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| 30 | datepath=`date --date="-18HOUR" +%Y/%m/%d`
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| 31 | fi
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| 32 | date=`echo $datepath | sed -e 's/\///g'`
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| 33 | printprocesslog "INFO processing "$datepath
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| 34 |
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| 35 | auxpath=/loc_data/aux/$datepath
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| 36 | makedir $auxpath >/dev/null
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| 37 | # create path for info files needed for analysis
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| 38 | infopath=$anapath/info/$datepath
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| 39 | makedir $infopath >/dev/null
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| 40 | echo "" > $infopath/runrow.txt
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| 41 | # create path for callisto output
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| 42 | calpath=$anapath/callisto/$datepath
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| 43 | makedir $calpath >/dev/null
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| 44 | rawpathnewdaq=/newdaq/raw/$datepath
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| 45 | if [ "$data1" = "yes" ]
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| 46 | then
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| 47 | rawpath=/data1/raw/$datepath
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| 48 | rsynctempdir=/data1/rsync_tmp
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| 49 | printprocesslog "INFO using "$rawpath" for processing"
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| 50 | else
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| 51 | rawpath=/scratch/raw/$datepath
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| 52 | rsynctempdir=/scratch/rsync_tmp
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| 53 | fi
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| 54 | if ! [ -d $rsynctempdir ]
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| 55 | then
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| 56 | mkdir $rsynctempdir
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| 57 | fi
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| 58 |
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| 59 |
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| 60 |
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| 61 | # needed auxiliary files:
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| 62 | # drive file with information about current source position
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| 63 | drivefile=$auxpath/${date}.DRIVE_CONTROL_SOURCE_POSITION.fits
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| 64 | # drive file with information tracking position
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| 65 | drivefile2=$auxpath/${date}.DRIVE_CONTROL_TRACKING_POSITION.fits
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| 66 | # file with magic weather information
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| 67 | mweatherfile=$auxpath/${date}.MAGIC_WEATHER_DATA.fits
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| 68 | # file with trigger rates
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| 69 | ratesfile=$auxpath/${date}.FTM_CONTROL_TRIGGER_RATES.fits
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| 70 | # file with trigger rates
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| 71 | tempfile=$auxpath/${date}.FSC_CONTROL_TEMPERATURE.fits
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| 72 | # file with trigger rates
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| 73 | humfile=$auxpath/${date}.FSC_CONTROL_HUMIDITY.fits
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| 74 |
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| 75 | function rsync_aux_file()
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| 76 | {
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| 77 | if check_file_avail $1
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| 78 | then
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| 79 | printprocesslog "INFO rsync "$1
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| 80 | if ! rsync -a -T $rsynctempdir newdaq:$1 $1
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| 81 | then
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| 82 | printprocesslog "WARN rsync of "$1" failed."
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| 83 | fi
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| 84 | fi
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| 85 | }
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| 86 |
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| 87 | function check_disks()
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| 88 | {
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| 89 | # at least 5% free disk on /data1
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| 90 | diskusage=( `df -P /data1 | grep data1 ` )
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| 91 | if [ ${diskusage[3]} -lt $disklimitnewdata2 ]
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| 92 | then
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| 93 | echo "WARN less than 5% left on /data1 on node "$HOSTNAME
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| 94 | printprocesslog "WARN less than 5% left on /data1 on node "$HOSTNAME
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| 95 | df -h /data1
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| 96 | finish
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| 97 | fi
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| 98 |
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| 99 | # if /data1 is used for processing, /scratch doesn't need to be checked
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| 100 | if [ "$data1" = "yes" ]
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| 101 | then
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| 102 | return
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| 103 | fi
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| 104 |
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| 105 | # at least 10% free disk on /scratch
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| 106 | diskusage=( `df -P /scratch | grep scratch ` )
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| 107 | if [ ${diskusage[3]} -lt $disklimitnewdata ]
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| 108 | then
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| 109 | echo "WARN less than 10% left on /scratch on node "$HOSTNAME
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| 110 | printprocesslog "WARN less than 10% left on /scratch on node "$HOSTNAME
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| 111 | df -h /scratch
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| 112 | finish
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| 113 | fi
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| 114 | }
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| 115 |
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| 116 | check_disks
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| 117 |
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| 118 | # getting lists of files
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| 119 | printprocesslog "INFO get lists of raw files on newdaq and daq"
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| 120 | #files=( `ssh newdaq "find $rawpath -type f -regex '.*20[0-9][0-9][01][0-9][0-3][0-9][_][0-9][0-9][0-9][.]d?r?s?[.]?fits[.]?[g]?[f]?[z]?' 2>/dev/null | sort "` )
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| 121 | files=( `find $rawpathnewdaq -type f -regex '.*20[0-9][0-9][01][0-9][0-3][0-9][_][0-9][0-9][0-9][.]d?r?s?[.]?fits[.]?[g]?[f]?[z]?' 2>/dev/null | sort ` )
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| 122 | if [ ${#files[@]} -eq 0 ]
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| 123 | then
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| 124 | printprocesslog "INFO no raw files available yet for "$datepath
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| 125 | finish
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| 126 | fi
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| 127 | fileslocal=( `find $rawpath -type f -regex '.*20[0-9][0-9][01][0-9][0-3][0-9][_][0-9][0-9][0-9][.]d?r?s?[.]?fits[.]?[g]?[f]?[z]?' 2>/dev/null | sort` )
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| 128 | callistofiles=( `find $calpath -type f -name $date*-calibration.log 2>/dev/null | sort` )
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| 129 |
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| 130 | # get number of dataruns from DB
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| 131 | query="SELECT Count(*) FROM RunInfo WHERE fNight="$date" AND fRunTypeKey=1"
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| 132 | numdataruns=`sendquery`
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| 133 | query="SELECT Count(*) FROM RunInfo WHERE fNight="$date" AND fRunTypeKey=6"
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| 134 | numlpruns=`sendquery`
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| 135 | query="SELECT Count(*) FROM RunInfo WHERE fNight="$date" AND fRunTypeKey=2 AND fHasDrsFile=1 AND fROI=300"
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| 136 | numpedruns=`sendquery`
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| 137 | query="SELECT Count(*) FROM RunInfo WHERE fNight="$date" AND fRunTypeKey=5"
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| 138 | numdrstime=`sendquery`
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| 139 | numpedruns=0
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| 140 | #numcalibrated=`echo " $numdataruns + $numlpruns + $numpedruns + $numdrstime " | bc -l`
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| 141 | numcalibrated=`echo " $numdataruns + $numdrstime " | bc -l`
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| 142 |
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| 143 | # create raw directory on daq, if not yet there
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| 144 | makedir $rawpath >/dev/null
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| 145 |
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| 146 | #echo "INFO #files-local:"${#fileslocal[@]}" #files-newdaq:"${#files[@]}" #callisto-logs:"${#callistofiles[@]}" #runs:"$numcalibrated
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| 147 | printprocesslog "INFO #files-local:"${#fileslocal[@]}" #files-newdaq:"${#files[@]}" #callisto-logs:"${#callistofiles[@]}" #runs:"$numcalibrated
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| 148 |
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| 149 | while [ ${#fileslocal[@]} -ne ${#files[@]} ] || [ $numcalibrated -ne ${#callistofiles[@]} ] # || [ $numcalibrated -ne 0 ] # FIXME: Logik ueberdenken u ueberarb
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| 150 | do
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| 151 | # only continue with script
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| 152 | # when there is more than 10% space on daq
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| 153 | source `dirname $0`/../Sourcefile.sh
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| 154 |
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| 155 | numcalibrated=0
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| 156 | #echo "INFO #files-daq:"${#fileslocal[@]}" #files-newdaq:"${#files[@]}" #callisto-logs:"${#callistofiles[@]}" #runs:"$numcalibrated
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| 157 | printprocesslog "INFO status beginning of while-loop #files-daq:"${#fileslocal[@]}" #files-newdaq:"${#files[@]}" #callisto-logs:"${#callistofiles[@]}" #runs:"$numcalibrated
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| 158 |
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| 159 | rsync_aux_file $drivefile
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| 160 | rsync_aux_file $drivefile2
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| 161 |
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| 162 | # files on newdaq
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| 163 | for file in ${files[@]}
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| 164 | do
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| 165 | # check if still enough diskspace for transfer
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| 166 | check_disks
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| 167 | if [ "$certaindate" != "" ]
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| 168 | then
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| 169 | echo "processing "$file
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| 170 | fi
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| 171 | printprocesslog "processing "$file
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| 172 | if [ "$data1" = "yes" ]
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| 173 | then
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| 174 | localfile=`echo $file | sed -e 's/newdaq/data1/'`
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| 175 | else
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| 176 | localfile=`echo $file | sed -e 's/newdaq/scratch/'`
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| 177 | fi
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| 178 | #localfile=$file
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| 179 |
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| 180 | source `dirname $0`/../Sourcefile.sh
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| 181 |
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| 182 | # check if file is already transferred
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| 183 | if ! ls $localfile >/dev/null 2>&1
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| 184 | then
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| 185 | # check if it is drs-file
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| 186 | # get stop time from raw-file
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| 187 | if [ "`echo $file | grep -o drs`" == "drs" ]
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| 188 | then
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| 189 | nondrs=`basename $file | sed -e 's/[.]drs//g'`
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| 190 | nondrsfile=`find -L $rawpath -name $nondrs.*z 2>/dev/null `
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| 191 | tstop=`$factpath/fitsdump -h $nondrsfile 2>/dev/null | grep TSTOPI | grep -E -o '[0-9]+'`
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| 192 | else
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| 193 | tstop=`$factpath/fitsdump -h $file 2>/dev/null | grep TSTOPI | grep -E -o '[0-9]+'`
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| 194 | fi
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| 195 | # when stop time is 0, file is not closed
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| 196 | # when an error is returned the tstop is empty
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| 197 | if [ "$tstop" == "0" ] || [ "$tstop" == "" ]
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| 198 | then
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| 199 | printprocesslog "DEBUG "$file" not yet closed."
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| 200 | # if a file is not closed and not touched for 30 minutes,
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| 201 | # it is assumed corrupted and still transferred
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| 202 | fileaccessed=`find $file -amin -30 2>/dev/null `
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| 203 | if ! [ "$fileaccessed" == "" ]
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| 204 | then
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| 205 | printprocesslog "INFO "$file" was accessed in the last 30 minutes => continue"
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| 206 | continue
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| 207 | else
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| 208 | printprocesslog "WARN: "$file" has empty TSTOP but was not touched for 30 minutes"
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| 209 | fileerror="yes"
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| 210 | fi
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| 211 | fi
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| 212 |
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| 213 | # rsync
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| 214 | #if ! rsync -au -T $rsynctempdir --bwlimit=$bwlimit newdaq:$file $localfile
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| 215 | if ! rsync -au -T $rsynctempdir --bwlimit=$bwlimit $file $localfile
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| 216 | then
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| 217 | printprocesslog "ERROR something went wrong with rsync of "$file
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| 218 | rm $localfile
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| 219 | continue
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| 220 | fi
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| 221 | printprocesslog "INFO "$file" rsynced successfully."
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| 222 | fi
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| 223 |
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| 224 | # for .drs.fits files no further treatment needed
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| 225 | if [ "`echo $localfile | grep -o drs`" == "drs" ]
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| 226 | then
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| 227 | continue
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| 228 | fi
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| 229 |
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| 230 | # # temporary check (needed to run on newdaq)
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| 231 | # if [ "`echo $file | grep -o drs`" == "drs" ]
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| 232 | # then
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| 233 | # nondrs=`basename $file | sed -e 's/[.]drs//g'`
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| 234 | # nondrsfile=`find -L $rawpath -name $nondrs.*z 2>/dev/null `
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| 235 | # tstop=`$factpath/fitsdump -h $nondrsfile 2>/dev/null | grep TSTOPI | grep -E -o '[0-9]+'`
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| 236 | # else
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| 237 | # tstop=`$factpath/fitsdump -h $file 2>/dev/null | grep TSTOPI | grep -E -o '[0-9]+'`
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| 238 | # fi
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| 239 | # # when stop time is 0, file is not closed
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| 240 | # # when an error is returned the tstop is empty
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| 241 | # if [ "$tstop" == "0" ] || [ "$tstop" == "" ]
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| 242 | # then
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| 243 | # printprocesslog "WARN "$file" not yet closed. -> continue (temporary check)"
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| 244 | # continue
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| 245 | # fi
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| 246 | # # end temporary check
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| 247 |
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| 248 | # treat other files (.fits.fz)
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| 249 | runtype=`$factpath/fitsdump -h $localfile 2>/dev/null | grep RUNTYPE | grep -E -o "['][a-z0-9._-]+[']" | sed -e "s/'//g" -e "s/_/-/g" -e "s/[.]//g"`
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| 250 | if [ "$runtype" != "data" ]
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| 251 | then
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| 252 | # skip a non-data run when it has not 1000 evts
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| 253 | # as this means probably an fad-loss
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| 254 | # and these runs are repeated in that case
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| 255 | numevts=`$factpath/fitsdump -h $file 2>/dev/null | grep Events | grep -E -o '[0-9]+'`
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| 256 | if [ "$numevts" == "" ]
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| 257 | then
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| 258 | printprocesslog "WARN could not get number of events from file "$file" -> continue "
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| 259 | #echo "WARN could not get number of events from file "$file" -> continue "
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| 260 | continue
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| 261 | fi
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| 262 | if [ $numevts -ne 1000 ]
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| 263 | then
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| 264 | printprocesslog "INFO file "$file" is a non-data file ("$runtype") and has not 1000 events ("$numevts")"
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| 265 | continue
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| 266 | fi
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| 267 | fi
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| 268 |
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| 269 | # get run number
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| 270 | runnum=`basename $localfile | cut -d_ -f2 | cut -d. -f1`
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| 271 |
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| 272 | # what is needed to process the different runs?
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| 273 | # P: run#(P), run#(drs-file)
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| 274 | # C: run#(C), run#(drs-file), run#(drs-time)
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| 275 | # D: run#(D), run#(drs-file), run#(drs-time), ?
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| 276 | # what is drs-file? pedestal, roi300, has drs.fits
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| 277 | callistolog=$calpath"/"$date"_"$runnum"-calibration.log"
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| 278 | case $runtype in
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| 279 | data) # treat D-runs
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| 280 | if [ "$fileerror" = "yes" ]
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| 281 | then
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| 282 | printprocesslog "INFO do not further process corrupted file "$localfile
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| 283 | fileerror=
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| 284 | continue
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| 285 | fi
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| 286 |
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| 287 | # some accounting
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| 288 | printprocesslog "DEBUG counting callisto logs and set data files +1."
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| 289 | # get number of callisto logs
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| 290 | runcallistocount=`ps aux | grep RunCallisto | grep -E -o '20[12][0-9][01][0-9][0-3][0-9]_[0-9][0-9][0-9]' | sort | uniq | wc -l`
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| 291 | # count runs to be calibrated
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| 292 | numcalibrated=`echo " $numcalibrated + 1 " | bc -l`
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| 293 | printprocesslog "DEBUG running callistos: "$runcallistocount" #runs: "$numcalibrated" #callisto-logs: "${#callistofiles[@]}
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| 294 |
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| 295 | # do not overload system in case of a lot of files to be processed
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| 296 | # numruncallistos is set in setup.fact.lp.data
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| 297 | if [ $runcallistocount -ge $numruncallistos ]
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| 298 | then
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| 299 | printprocesslog "INFO "$runcallistocount" RunCallisto.sh are running -> continue"
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| 300 | continue
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| 301 | fi
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| 302 |
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| 303 | # starting calibration
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| 304 | if ! [ -e $callistolog ]
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| 305 | then
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| 306 | rsync_aux_file $drivefile
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| 307 | rsync_aux_file $drivefile2
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| 308 | rsync_aux_file $mweatherfile
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| 309 | rsync_aux_file $ratesfile
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| 310 | rsync_aux_file $tempfile
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| 311 | rsync_aux_file $humfile
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| 312 |
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| 313 | calfile=$calpath"/"$date"_"$runnum"_C.root"
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| 314 | printprocesslog "INFO starting RunCallisto.sh for drun "$localfile" logfile "$callistolog" drs-calib "$drscalib" outpath "$outpath" calfile "$calfile
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| 315 | `dirname $0`/RunCallisto.sh "drun" $callistolog $localfile $drscalib $calpath $calfile &
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| 316 | fi
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| 317 | continue
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| 318 | ;;
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| 319 | pedestal) # treat P-runs
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| 320 | roi=`$factpath/fitsdump -h $localfile 2>/dev/null | grep ROI | grep -v ROITM | grep -E -o "[0-9][0-9][0-9][0-9]?" | sed -e "s/'//g" -e "s/_/-/g" -e "s/[.]//g"`
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| 321 | if [ $roi -eq 300 ]
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| 322 | then
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| 323 | # check drs-file
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| 324 | drsfile=`echo $localfile | sed -e 's/[.]fits[.]fz/.drs.fits/g'`
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| 325 | if [ -e $drsfile ]
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| 326 | then
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| 327 | # set name of drs-file
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| 328 | drscalib=$drsfile
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| 329 | continue
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| 330 | #else
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| 331 | # not needed for QLA
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| 332 | #numcalibrated=`echo " $numcalibrated + 1 " | bc -l`
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| 333 | #if ! [ -e $callistolog ]
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| 334 | #then
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| 335 | # pedfile=$calpath"/"$date"_"$runnum"-pedestal.root"
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| 336 | # # count runs to be calibrated
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| 337 | # printprocesslog "INFO starting RunCallisto.sh for prun "$localfile" logfile "$callistolog" drs-calib "$drscalib" pedfile "$pedfile
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| 338 | # echo "INFO starting RunCallisto.sh for prun "$localfile" logfile "$callistolog" drs-calib "$drscalib" pedfile "$pedfile
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| 339 | # `dirname $0`/RunCallisto.sh "prun" $callistolog $localfile $drscalib $pedfile &
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| 340 | #fi
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| 341 | fi
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| 342 | fi
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| 343 | ;;
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| 344 | light-pulser-ext) # treat C-runs
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| 345 | # do lp-treatment -> not needed for QLA
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| 346 | #lpfile=$calpath"/"$date"_"$runnum"-lightpulser.root"
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| 347 | #numcalibrated=`echo " $numcalibrated + 1 " | bc -l`
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| 348 | #if ! [ -e $callistolog ]
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| 349 | #then
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| 350 | # if [ -e $drstime ]
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| 351 | # then
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| 352 | # # count runs to be calibrated
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| 353 | # printprocesslog "INFO starting RunCallisto.sh for crun "$localfile" logfile "$callistolog" drs-calib "$drscalib" drs-time "$drstime" lpfile "$lpfile
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| 354 | # echo "INFO starting RunCallisto.sh for crun "$localfile" logfile "$callistolog" drs-calib "$drscalib" drs-time "$drstime" lpfile "$lpfile
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| 355 | # `dirname $0`/RunCallistoNew.sh "crun" $callistolog $localfile $drscalib $drstime $lpfile &
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| 356 | # fi
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| 357 | #fi
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| 358 | ;;
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| 359 | drs-time) # treat drs-time runs
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| 360 | # do drs-timing calibration
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| 361 | drstime=$calpath"/"$date"_"$runnum"-drstime.root"
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| 362 | # starting calibration
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| 363 | numcalibrated=`echo " $numcalibrated + 1 " | bc -l`
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| 364 | if ! [ -e $callistolog ]
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| 365 | then
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| 366 | # count runs to be calibrated
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| 367 | printprocesslog "INFO starting RunCallisto.sh for time "$localfile" logfile "$callistolog" drs-ped "$drsped" drstime "$drstime
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| 368 | #echo "INFO starting RunCallisto.sh for time "$localfile" logfile "$callistolog" drs-ped "$drsped" drstime "$drstime
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| 369 | `dirname $0`/RunCallisto.sh "time" $callistolog $localfile $drsped $drstime &
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| 370 | fi
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| 371 | ;;
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| 372 | drs-pedestal) # get drs-pedestal
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| 373 | roi=`$factpath/fitsdump -h $localfile 2>/dev/null | grep ROI | grep -v ROITM | grep -E -o "[0-9][0-9][0-9][0-9]?" | sed -e "s/'//g" -e "s/_/-/g" -e "s/[.]//g"`
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| 374 | drs=`$factpath/fitsdump -h $localfile 2>/dev/null | grep DRSCALIB | grep -E -o " T " `
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| 375 | if [ $roi -eq 1024 ] && [ "$drs" == " T " ]
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| 376 | then
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| 377 | drsped=`echo $localfile | sed -e 's/[.]fits[.]fz/.drs.fits/g'`
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| 378 | fi
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| 379 | ;;
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| 380 | *) # other runs
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| 381 | printprocesslog "INFO file "$file" has runtype "$runtype" -> continue "
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| 382 | continue
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| 383 | ;;
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| 384 | esac
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| 385 | done
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| 386 | printprocesslog "INFO status after loop: "$runcallistocount" callistos running, "$numcalibrated" data runs to process in total, "${#callistofiles[@]}" have already a callisto-logfile "
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| 387 |
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| 388 | # get new file lists
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| 389 | printprocesslog "INFO get new file lists for "$datepath
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| 390 | #files=( `ssh newdaq "find $rawpath -type f -regex '.*20[0-9][0-9][01][0-9][0-3][0-9][_][0-9][0-9][0-9][.]d?r?s?[.]?fits[.]?[g]?[f]?[z]?' 2>/dev/null | sort "` )
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| 391 | files=( `find $rawpathnewdaq -type f -regex '.*20[0-9][0-9][01][0-9][0-3][0-9][_][0-9][0-9][0-9][.]d?r?s?[.]?fits[.]?[g]?[f]?[z]?' 2>/dev/null | sort ` )
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| 392 | fileslocal=( `find $rawpath -type f -regex '.*20[0-9][0-9][01][0-9][0-3][0-9][_][0-9][0-9][0-9][.]d?r?s?[.]?fits[.]?[g]?[f]?[z]?' 2>/dev/null | sort` )
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| 393 | callistofiles=( `find $calpath -type f -name $date*-calibration.log 2>/dev/null | sort` )
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| 394 | #echo "INFO #files-daq:"${#fileslocal[@]}" #files-newdaq:"${#files[@]}" #callisto-logs:"${#callistofiles[@]}" #runs:"$numcalibrated
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| 395 | printprocesslog "INFO status after for-loop #files-daq:"${#fileslocal[@]}" #files-newdaq:"${#files[@]}" #callisto-logs:"${#callistofiles[@]}" #runs:"$numcalibrated
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| 396 |
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| 397 | # wait and get new file lists
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| 398 | update=
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| 399 | if [ ${#fileslocal[@]} -eq ${#files[@]} ]
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| 400 | then
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| 401 | printprocesslog "INFO wait 60 seconds."
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| 402 | sleep 60
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| 403 | printprocesslog "INFO get new file lists for "$datepath
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| 404 | #files=( `ssh newdaq "find $rawpath -type f -regex '.*20[0-9][0-9][01][0-9][0-3][0-9][_][0-9][0-9][0-9][.]d?r?s?[.]?fits[.]?[g]?[f]?[z]?' 2>/dev/null | sort "` )
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| 405 | files=( `find $rawpathnewdaq -type f -regex '.*20[0-9][0-9][01][0-9][0-3][0-9][_][0-9][0-9][0-9][.]d?r?s?[.]?fits[.]?[g]?[f]?[z]?' 2>/dev/null | sort ` )
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| 406 | fileslocal=( `find $rawpath -type f -regex '.*20[0-9][0-9][01][0-9][0-3][0-9][_][0-9][0-9][0-9][.]d?r?s?[.]?fits[.]?[g]?[f]?[z]?' 2>/dev/null | sort` )
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| 407 | callistofiles=( `find $calpath -type f -name $date*-calibration.log 2>/dev/null | sort` )
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| 408 | fi
|
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| 409 | #echo "INFO #files-daq:"${#fileslocal[@]}" #files-newdaq:"${#files[@]}" #callisto-logs:"${#callistofiles[@]}" #runs:"$numcalibrated
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| 410 | printprocesslog "INFO status after wait end of while-loop #files-daq:"${#fileslocal[@]}" #files-newdaq:"${#files[@]}" #callisto-logs:"${#callistofiles[@]}" #runs:"$numcalibrated
|
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| 411 | sleep 30
|
|---|
| 412 | printprocesslog "INFO sleep 30"
|
|---|
| 413 | done
|
|---|
| 414 |
|
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| 415 |
|
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| 416 | finish
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