#!/bin/bash # source `dirname $0`/../Sourcefile.sh printprocesslog "INFO starting $0" # fixme: get sources from DB sources=( 1 2 5 7 ) #sources=( 1 2 5 ) numganymeds=0 printprocesslog "INFO get all nights." query="SELECT fNight FROM RunInfo WHERE not isnull(fSourceKey) and fNight > 20130301 GROUP BY fNight ORDER BY fNight DESC" nights=( `sendquery` ) for source in ${sources[@]} do dspath=$anapath/datasets_night/$source makedir $dspath done for night in ${nights[@]} do echo $night for source in ${sources[@]} do dspath=$anapath/datasets_night/$source dsfile=$dspath"/dataset"$night".txt" if ! ls $dsfile >/dev/null 2>&1 then echo "# source "$source" for night "$night > $dsfile linesold=0 else lines=( `wc -l $dsfile` ) linesold[$source]=${lines[0]} fi done inpath=$anapath/star/`echo $night | cut -c 1-4`/`echo $night | cut -c 5-6`/`echo $night | cut -c 7-8` #files=`find $inpath -name '*_I.root'` files=( `ls $inpath/*_I.root 2>/dev/null` ) if [ ${#files[@]} -eq 0 ] then continue fi echo "files: "${#files[@]} for file in ${files[@]} do run=`basename $file | cut -d_ -f2` query="SELECT fSourceKey FROM RunInfo WHERE fNight="$night" AND fRunID="$run" GROUP BY fSourceKey" source=`sendquery` if [ $source -eq 0 ] then continue fi dspath=$anapath/datasets_night/$source dsfile=$dspath"/dataset"$night".txt" if ! grep `basename $file` $dsfile >/dev/null 2>&1 then if echo $resulttable1 | grep ISDC >/dev/null 2>&1 then query="SELECT LPAD(fSequenceID, 3, 0) FROM RunInfo WHERE fNight="$night" AND fRunID="$run seq=`sendquery` merpplog=`dirname $file`"/"$night"_"$seq"-merpp.log" else merpplog=`echo $file | sed -e 's/_I.root/-merpp.log/'` fi echo $merpplog stillrunning=`find $merpplog -mmin -1 2>/dev/null` if [ -e $merpplog ] && [ "$stillrunning" == "" ] then echo `dirname $file`" "`basename $file` >> $dsfile echo `dirname $file`" "`basename $file` else printprocesslog "INFO merpp still running - wait with file "$file continue fi fi done for source in ${sources[@]} do dspath=$anapath/datasets_night/$source dsfile=$dspath"/dataset"$night".txt" if ls $dsfile >/dev/null 2>&1 then lines=( `wc -l $dsfile` ) linesnew[$source]=${lines[0]} if [ ${lines[0]} -le 1 ] then # not ideal - what if number of files stays the same, but files change? rm -v $dsfile continue fi echo "new: "${linesnew[$source]} echo "old: "${linesold[$source]} if [ ${linesnew[$source]} -le ${linesold[$source]} ] then echo "nothing new" continue else ls $dsfile fi fi query="SELECT Round(fRightAscension,6), Round(fDeclination,6) from source WHERE fSourceKey="$source coordinates=( `sendquery` ) if [ "${coordinates[0]}" == "" ] || [ "${coordinates[1]}" == "" ] then printprocesslog "WARN couldn't get coordinates ("${coordinates[@]}") from "$drivefile #echo "WARN couldn't get coordinates ("${coordinates[@]}") from "$drivefile continue fi if [ "${coordinates[0]}" == "0" ] || [ "${coordinates[1]}" == "0" ] then printprocesslog "WARN coordinates "${coordinates[@]} #echo "WARN coordinates "${coordinates[@]} continue fi if ls $dsfile >/dev/null 2>&1 then outpath=$anapath/ganymeds_night/$source logfile=$outpath"/ganymed"$night".log" echo $logfile #ls $logfile if ! ls $logfile >/dev/null 2>&1 then ls $dsfile if [ "$qlasge" = "yes" ] then printprocesslog "$sgepath/qsub -b y -q fact_short -v AUTOMATIONSETUP=$AUTOMATIONSETUP -v dsfile=$dsfile -v ra=${coordinates[0]} -v dec=${coordinates[1]} -e bla.txt -o bla.txt `dirname $0`/RunGanymed.sh" $sgepath/qsub -b y -q fact_short -v AUTOMATIONSETUP=$AUTOMATIONSETUP -v dsfile=$dsfile -v ra=${coordinates[0]} -v dec=${coordinates[1]} -e bla.txt -o bla.txt `dirname $0`/RunGanymed.sh else `dirname $0`/RunGanymed.sh $dsfile ${coordinates[0]} ${coordinates[1]} fi #echo "`dirname $0`/RunGanymed.sh $source $dsfile" #`dirname $0`/RunGanymed.sh $source $dsfile numganymeds=`echo " $numganymeds + 1 " | bc -l` fi fi done echo "found "$numganymeds" ganymeds." done finish