#!/bin/bash # data paths auxdata=/data00/fact-construction/aux rawdata=/data00/fact-construction/raw rawdata_for_sed=$(printf "%s\n" "$rawdata" | sed 's/[][\.*^$(){}?+|/]/\\&/g') ziprawdata=/loc_data/zipraw ziprawdata_for_sed=$(printf "%s\n" "$ziprawdata" | sed 's/[][\.*^$(){}?+|/]/\\&/g') # setup to use ftools export HEADAS=/opt/heasoft-6.11/x86_64-unknown-linux-gnu-libc2.13-0/ export HEADASPROMPT=/dev/null # software versions #export factpath=/home/fact/SW.automatic.processing/FACT++.2012.01.25 export mars=~/Mars.von.Thomas.2012.03.07 export AUTOMATIONSETUP="isdc.fact" #export SOURCEFILEPATH=`dirname/datacenter/scripts #source $SOURCEFILEPATH/sourcefile # Author(s): Daniela Dorner 05/2005 # # Copyright: MAGIC Software Development, 2000-2010 # # # ======================================================================== # # This a resource file for the scripts, in which the standard paths and # functions, which are needed more often are stored. # Only constant variables are stored here, changing variables are stored # in datacenter/scripts/setup # # to treat aliases in bash-script correctly shopt -s expand_aliases # check if script has been started with absolute path if ! dirname $0 | grep -E '^/' >/dev/null 2>&1 then echo "Please start your script with an absolute path." exit fi if [ "$AUTOMATIONSETUP" = "" ] then echo "Please set the environment variable \$AUTOMATIONSETUP." exit fi if [ "$SOURCEFILEPATH" = "" ] then export SOURCEFILEPATH=`dirname $0` fi if [ "$SCRIPTNAME" = "" ] then SCRIPTNAME=`basename $0` fi source $SOURCEFILEPATH/../Setup/setup.$AUTOMATIONSETUP datetime=`date +%F-%H-%M-%S` # function to make sure that a directory is made function makedir() { if [ ! -d $@ ] then mkdir -pv $@ if [ ! -d $@ ] then if ! [ "$processlog" = "" ] then echo `date +%F\ %T`" "`whoami`"@"$HOSTNAME" "$SCRIPTNAME"["$$"] ERROR could not make dir "$@ >> $processlog else echo "could not make dir "$@ fi if ls $lockfile >/dev/null 2>&1 then rm -v $lockfile fi exit fi fi } # logging paths for runlogs and processlog runlogpath=$logpath/run/`date +%Y/%m/%d` processlogpath=$logpath/processlog makedir $runlogpath makedir $processlogpath processlog=$processlogpath/process`date +%F`.log makedir $lockpath # function to provide proper logging in a single logfile ($processlog) function printprocesslog { makedir $processlogpath echo `date +%F\ %T`" "`whoami`"@"$HOSTNAME" "$SCRIPTNAME"["$$"] "$@ >> $processlog } # function to exit a script properly function finish() { if ! [ "$lockfile" = "" ] && ls $lockfile >/dev/null 2>&1 then printprocesslog "DEBUG " `rm -v $lockfile` fi printprocesslog "DEBUG finished "$SOURCEFILEPATH"/"$SCRIPTNAME exit } # set checkvalue to ok at the beginning of the scripts check="ok" # setup for jobmanager: # log files (can't be defined in script itself, as script can run longer # than one day jmerrorlog=$runlogpath/jobmanager-`whoami`-$HOSTNAME-$AUTOMATIONSETUP-`date +%F`-error.log jmscriptlog=$runlogpath/jobmanager-`whoami`-$HOSTNAME-$AUTOMATIONSETUP-`date +%F`.log # check if rc-files are available if ! ls $steps >/dev/null then echo "Can't find steps.rc ($steps)" finish fi if ! ls $sqlrc >/dev/null then echo "Can't find sql.rc ($sqlrc)" finish fi # resetting values for jobmanager pno=0 totalpno=0 running=0 queued=0 runningscript=0 queuedscript=0 stillinqueue=0 # alias (we cannot check the beginning of the line due to # color codes in filldotraw.C) alias 'intgrep'='grep -E -o \\\(int\\\)[0-9]+$ | grep -E -o [0-9]+' # in the following the functions, which are needed by several scripts, are # defined # function to check if a process is already locked # command line option can be used to execute something, e.g. 'continue' function checklock() { if ! echo `date +%F\ %T`" "`whoami`"@"$HOSTNAME" "$SCRIPTNAME"["$$"] "`uname -a` > $lockfile 2>/dev/null then printprocesslog "WARN lockfile $lockfile exists" $@ exit else printprocesslog "DEBUG created lockfile $lockfile" fi } # print the current status values function printstatusvalues() { echo "the current values are:" echo " starttime=$starttime" echo " stoptime=$stoptime" echo " availtime=$availtime" echo " returncode=$returncode" echo "-- check: -$check-" echo "" } # get the db-setup from the sql.rc function getdbsetup() { db=`grep Database $sqlrc | grep -v '#' | sed -e 's/Database: //' -e 's/ //g'` pw=`grep Password $sqlrc | grep -v '#' | sed -e 's/Password: //' -e 's/ //g'` us=`grep User $sqlrc | grep -v '#' | sed -e 's/User: //' -e 's/ //g'` ho=`grep URL $sqlrc | grep -v '#' | sed -e 's/ //g' -e 's/URL:mysql:\/\///'` # echo "setup: " # echo " db: "$db # echo " pw: "$pw # echo " us: "$us # echo " ho: "$ho } # function to send a mysql query function sendquery() { getdbsetup printprocesslog "DEBUG sendquery QUERY: "$query if ! val=`mysql -s -u $us --password=$pw --host=$ho $db -e " $query "` then printprocesslog "ERROR could not query DB "$db" on host "$ho" with user "$us #printprocesslog "ERROR could not query db (program: $program, function sendquery)" #return 1 #why??? finish fi if [ "$val" = "NULL" ] then val= fi echo $val return 0 } # function to get information from the setupfile $steps function getfromsetup() { grep $1"[.]"$2":" $steps | grep -v '#' | sed -e "s/$1[.]$2://" } # function to get the needed information from the dependencies-file steps.rc function getstepinfo() { getdbsetup needs=( `getfromsetup $step "Needs"` ) noderestricted=`getfromsetup $step "NodeRestricted"` prims=( `getfromsetup $step "Primaries"` ) maintable=`getfromsetup $step "MainTable" | sed -e "s/\ //g"` # echo " maintable: "$maintable # echo " needs: "${needs[@]} # echo " noderestricted: "$noderestricted # echo " prims: "${prims[@]} } # function to get the joins needed for the get/set status queries function getalljoins() { # add table query=$query" "$maintable"Status" # add special join query=$query" "`getfromsetup $maintable "SpecialJoin"` # add join for step unless step is the same as maintable if ! [ "$step" = "$maintable" ] then query=$query" LEFT JOIN "$step"Status USING("${prims[@]}") " fi # add joins for influences or needs for otherstep in ${othersteps[@]} do if ! [ "$otherstep" = "$maintable" ] then query=$query" LEFT JOIN "$otherstep"Status USING("`getfromsetup $otherstep "Primaries"`") " fi done } # function to create the middle part of a query # which is identical for the functions getstatus() and gettodo() function getstatusquery() { # add from which table the information is queried query=$query" FROM " othersteps=${needs[@]} getalljoins # add condition query=$query" WHERE " # add condition for step, i.e. step is not yet done query=$query" ISNULL("$step"Status.fStartTime) " query=$query" AND ISNULL("$step"Status.fStopTime) " query=$query" AND ISNULL("$step"Status.fAvailable) " query=$query" AND ISNULL("$step"Status.fReturnCode) " # add requirement for production host in case it is needed if [ "$1 " != " " ] then query=$query" AND fProductionHostKEY=$2 " fi if ! echo $query | grep UPDATE >/dev/null 2>&1 then query=$query" GROUP BY "${prims[@]} fi # add condition for needs, i.e. that step is done for (( k=0 ; k < ${#needs[@]} ; k++ )) do if [ $k -eq 0 ] then query=$query" HAVING " else query=$query" AND " fi query=$query" COUNT(*)=COUNT(IF(" query=$query" NOT ISNULL("${needs[$k]}"Status.fStartTime) " query=$query" AND NOT ISNULL("${needs[$k]}"Status.fStopTime) " query=$query" AND NOT ISNULL("${needs[$k]}"Status.fAvailable) " query=$query" AND ISNULL("${needs[$k]}"Status.fReturnCode) " query=$query" , 1, NULL)) " done } # function to get todolist # returns the next or the list of next steps function gettodo() { # reset the variable for the number of the next step process= printprocesslog "DEBUG getting todo for step $step..." getstepinfo # get query query=" SELECT "${prims[@]} getstatusquery $2 # order by priority to the the number of the next step to be done query=$query" ORDER BY "$step"Status.fPriority desc " # add limitation in case only one or a limited number of # processes should be executed if [ "$1 " != " " ] then query=$query" limit 0, $1 " fi # print query printprocesslog "DEBUG gettodo for step $step QUERY: "$query # execute query process=`sendquery` #if ! process=`mysql -s -u $us --password=$pw --host=$ho $db -e " $query "` #then # printprocesslog "ERROR could not query processes from db (program: $program, function gettodo)" # finish #fi # get numbers of next step from mysql result if [ "$process" = "" ] then printprocesslog "DEBUG => nothing to do" finish else primaries=( $process ) num=`expr ${#primaries[@]} / ${#prims[@]} ` fi } # function to get the number of processes which still have to be done function getstatus() { # reset the variable for the number of steps to be done numproc=0 getstepinfo # get query query=" SELECT "${prims[@]} getstatusquery $1 # print query printprocesslog "DEBUG getstatus for step $step QUERY: "$query # execute query #numproc=`sendquery `#cannot be done with sendquery, because of row counting if ! numproc=`mysql -s -u $us --password=$pw --host=$ho $db -e " $query " | wc -l` then printprocesslog "ERROR could not query number of processes from db (program: $program, function getstatus)" echo `date +%F\ %T`" ERROR could not query number of processes from db (program: $program, function getstatus)" continue fi } # function to set status of a process in the db function setstatus() { # remark: # this function does not include the 'Default' flag # for resetting steps # for dowebplots (there are steps which have no entry in the DB) if [ "$step" = "no" ] then return fi # reset status values starttime=NULL stoptime=NULL availtime=NULL returncode=NULL # evaluate the status values case $@ in start) printprocesslog "DEBUG setstatus start" starttime="Now()" ;; stop) case $check in ok) printprocesslog "DEBUB setstatus stop - ok" starttime=noreset stoptime="Now()" if [ "$processingsite" = "$storagesite" ] then availtime="Now()" fi ;; no) printprocesslog "DEBUG setstatus stop - nothing new" check="ok" ;; *) printprocesslog "DEBUG setstatus stop - failed" starttime=noreset stoptime="Now()" if [ "$processingsite" = "$storagesite" ] then availtime="Now()" fi if [ "$check" == "" ] then returncode=1 else returncode=$check fi check="ok" ;; esac ;; *) printprocesslog "ERROR function setstatus got wrong variable" finish ;; esac # get getstepinfo # get the influences from the steps.rc by evaluating the needs of all steps othersteps=`grep $step $steps | grep -v '#' | grep "Needs" | grep -v "$step[.]Needs" | cut -d'.' -f1` # get query query=" UPDATE " getalljoins # set the status values according to the new status of the step query=$query" SET " if ! [ "$starttime" = "noreset" ] then query=$query" "$step"Status.fStartTime=$starttime, " fi query=$query" "$step"Status.fStopTime=$stoptime, "$step"Status.fAvailable=$availtime" query=$query", "$step"Status.fReturnCode=$returncode , "$step"Status.fProcessingSiteKEY=$sitekey " # set also the status values of the influenced steps for otherstep in $othersteps do query=$query", "$otherstep"Status.fStartTime=NULL " query=$query", "$otherstep"Status.fStopTime=NULL " query=$query", "$otherstep"Status.fAvailable=NULL " query=$query", "$otherstep"Status.fReturnCode=NULL " query=$query", "$otherstep"Status.fProcessingSiteKEY=NULL " done # give the condition for which step the status values have to be set query=$query" WHERE " if [ "$s" = "" ] then s=0 fi query=$query" "$step"Status."`echo ${prims[0]} | sed -e 's/,//g'`"='${primaries[$s*${#prims[@]}]}'" for (( j=1 ; j < ${#prims[@]} ; j++ )) do query=$query" AND "$step"Status."`echo ${prims[$j]} | sed -e 's/,//g'`"='${primaries[$s*${#prims[@]}+$j]}' " done # add additional query to allow for locking in db if [ "$1" = "start" ] then query=$query" AND ISNULL("$step"Status.fStartTime) " fi # add row count to know how many rows have been changed query=$query"; SELECT ROW_COUNT();" # print query printprocesslog "DEBUG setstatus for step $step QUERY: "$query # execute query numchanged=`sendquery` #if ! numchanged=`mysql -s -u $us --password=$pw --host=$ho $db -e " $query "` #then # printprocesslog "ERROR could not set status in db (program: $program, function setstatus)" # finish #fi if [ $numchanged -gt 0 ] then printprocesslog "INFO successful set of status in DB." else # should not happen printprocesslog "ERROR status in DB was already set by another process " fi }