#!/bin/bash # to treat aliases in bash-script correctly shopt -s expand_aliases # check if script has been started with absolute path if ! dirname $0 | grep -E '^/' >/dev/null 2>&1 then echo "Please start your script with an absolute path." exit fi if [ "$AUTOMATIONSETUP" = "" ] then echo "Please set the environment variable \$AUTOMATIONSETUP." exit fi if [ "$SOURCEFILEPATH" = "" ] then export SOURCEFILEPATH=`dirname $0` fi if [ "$SCRIPTNAME" = "" ] then SCRIPTNAME=`basename $0` fi source $SOURCEFILEPATH/../Setup/setup.$AUTOMATIONSETUP if [ "$mars" = "" ] then echo "Please set the path for MARS." exit fi datetime=`date +%F-%H-%M-%S` if [ "$transferdelay" = "" ] then # setup where immediate report of problem is needed, i.e. mainly LP checknight=`date +%Y%m%d --date="-19HOUR"` else # any setup where transfer might cause a delay in arrival of files checknight=`date +%Y%m%d --date="-${transferdelay}day"` fi # function to make sure that a directory is made function makedir() { if [ ! -d $@ ] then if [ "$processlog" = "" ] || [ "$logfile" = "" ] then mkdir -p $@ else mkdir -pv $@ fi if [ ! -d $@ ] then if ! [ "$processlog" = "" ] then echo `date +%F\ %T`" "`whoami`"@"$HOSTNAME" "$SCRIPTNAME"["$$"] ERROR could not make dir "$@ >> $processlog else echo "could not make dir "$@ fi if ls $lockfile >/dev/null 2>&1 then rm -v $lockfile fi exit fi fi } # logging paths for runlogs and processlog runlogpath=$logpath/run/`date +%Y/%m/%d` processlogpath=$logpath/processlog makedir $runlogpath makedir $processlogpath processlog=$processlogpath/process`date +%F`.log makedir $lockpath # function to provide proper logging in a single logfile ($processlog) function printprocesslog { makedir $processlogpath echo `date +%F\ %T`" "`whoami`"@"$HOSTNAME" "$SCRIPTNAME"["$$"] "$@ >> $processlog } # function to exit a script properly function finish() { if ! [ "$lockfile" = "" ] && ls $lockfile >/dev/null 2>&1 then printprocesslog "DEBUG " `rm -v $lockfile` fi printprocesslog "DEBUG finished "$SOURCEFILEPATH"/"$SCRIPTNAME # fixme: handle different cases - sometimes exit of script is needed, sometimes only continue exit } # set checkvalue to ok at the beginning of the scripts check="ok" # setup for jobmanager: # log files (can't be defined in script itself, as script can run longer # than one day jmerrorlog=$runlogpath/jobmanager-`whoami`-$HOSTNAME-$AUTOMATIONSETUP-`date +%F`-error.log jmscriptlog=$runlogpath/jobmanager-`whoami`-$HOSTNAME-$AUTOMATIONSETUP-`date +%F`.log # check if rc-files are available if ! ls $steps >/dev/null then echo "Can't find steps.rc ($steps)" finish fi if ! ls $sqlrc >/dev/null 2>&1 || [ "$sqlrc" = "" ] then echo "Can't find sql.rc ($sqlrc)" finish fi # resetting values for jobmanager pno=0 totalpno=0 running=0 queued=0 runningscript=0 queuedscript=0 stillinqueue=0 # alias (we cannot check the beginning of the line due to # color codes in filldotraw.C) alias 'intgrep'='grep -E -o \\\("(int|Bool_t)"\\\)[0-9]+$ | grep -E -o [0-9]+' # in the following the functions, which are needed by several scripts, are # defined # function to check if a process is already locked # command line option can be used to execute something, e.g. 'continue' function checklock() { if ! echo `date +%F\ %T`" "`whoami`"@"$HOSTNAME" "$SCRIPTNAME"["$$"] "`uname -a` > $lockfile 2>/dev/null then if find $lockfile -amin -5 then printprocesslog "INFO lockfile $lockfile exists" else printprocesslog "WARN lockfile $lockfile exists" fi $@ exit else printprocesslog "DEBUG created lockfile $lockfile" fi } # print the current status values function printstatusvalues() { echo "the current values are:" echo " starttime=$starttime" echo " stoptime=$stoptime" echo " availtime=$availtime" echo " returncode=$returncode" echo "-- check: -$check-" echo "" } # function to send a mysql query function sendquery() { #getdbsetup printprocesslog "DEBUG sendquery QUERY: "$query val=`mysql --defaults-file=$sqlrc -s -e " $query " 2>&1` checkmysql=`echo $?` if [ $checkmysql -gt 0 ] then printprocesslog "ERROR could not query DB (program: $program, function sendquery, mysqlsetup $sqlrc) " printprocesslog "MYSQLERROR [returncode: "$checkmysql"] "$val error=`echo $val | grep -E -o 'ERROR [1-9]{1,4}' | grep -E -o '[1-9]{1,4}'` # here possible reaction to mysql error if [ $error -eq 1213 ] || [ $error -eq 1205 ] then #printprocesslog "WARN Deadlock found. Should resend query." printprocesslog "DEBUG sendquery QUERY: [2nd try] "$query val=`mysql --defaults-file=$sqlrc -s -e " $query " 2>&1` checkmysql2=`echo $?` if [ $checkmysql2 -gt 0 ] then printprocesslog "ERROR could not query DB (program: $program, function sendquery, mysqlsetup $sqlrc) [2nd try]" printprocesslog "MYSQLERROR [returncode: "$checkmysql"] "$val" [2nd try]" error2=`echo $val | grep -E -o 'ERROR [1-9]{1,4}' | grep -E -o '[1-9]{1,4}'` val= finish else if [ "$val" = "NULL" ] then val= fi echo $val return 0 fi fi val= finish else warning=`echo $val | grep -o -E 'mysql: \[Warning\]'` if [ "$warning" != "" ] then printprocesslog "WARN possible problem to query DB (program: $program, function sendquery, mysqlsetup $sqlrc) " printprocesslog "MYSQLWARN [returncode: "$checkmysql"] "$val val= finish fi fi if [ "$val" = "NULL" ] then val= fi echo $val return 0 } # function to get information from the setupfile $steps function getfromsetup() { grep $1"[.]"$2":" $steps | grep -v '#' | sed -e "s/$1[.]$2://" } # function to get the needed information from the dependencies-file steps.rc function getstepinfo() { #getdbsetup needs=( `getfromsetup $step "Needs"` ) noderestricted=`getfromsetup $step "NodeRestricted"` prims=( `getfromsetup $step "Primaries"` ) maintable=`getfromsetup $step "MainTable" | sed -e "s/\ //g"` sort=`getfromsetup $step "SortDirection" | sed -e "s/\ //g"` # echo " maintable: "$maintable # echo " needs: "${needs[@]} # echo " noderestricted: "$noderestricted # echo " prims: "${prims[@]} } # function to get the joins needed for the get/set status queries function getalljoins() { # add table query=$query" "$maintable"Status" # add special joins query=$query" "`getfromsetup $maintable "SpecialJoin"` if [ "$1" = "set" ] then query=$query" "`getfromsetup $maintable "SpecialJoinSet"` fi # add join for step unless step is the same as maintable if ! [ "$step" = "$maintable" ] then query=$query" LEFT JOIN "$step"Status USING("${prims[@]}") " fi # add joins for influences or needs for otherstep in ${othersteps[@]} do #printprocesslog "DEBUG "$otherstep if ! [ "$otherstep" = "$maintable" ] then # joins for needed steps if [ "$1" = "get" ] then query=$query" LEFT JOIN "$otherstep"Status USING("`getfromsetup $otherstep "Primaries"`") " fi # joins for influenced steps if [ "$1" = "set" ] then query=$query" "`getfromsetup $otherstep "SpecialJoinSet2"` query=$query" LEFT JOIN "$otherstep"Status USING("`getfromsetup $otherstep "Primaries"`") " fi fi done } # function to create the middle part of a query # which is identical for the functions getstatus() and gettodo() function getstatusquery() { # add from which table the information is queried query=$query" FROM " othersteps=${needs[@]} getalljoins "get" # add condition query=$query" WHERE " # add condition for step, i.e. step is not yet done query=$query" ISNULL("$step"Status.fStartTime) " query=$query" AND ISNULL("$step"Status.fStopTime) " query=$query" AND ISNULL("$step"Status.fAvailable) " query=$query" AND ISNULL("$step"Status.fReturnCode) " # add requirement for production host in case it is needed if [ "$1 " != " " ] then query=$query" AND fProductionHostKEY=$2 " fi query=$query`getfromsetup $step "SpecialWhere"` # add condition for needs, i.e. that step is done for (( k=0 ; k < ${#needs[@]} ; k++ )) do # if [ $k -eq 0 ] # then # query=$query" HAVING " # else query=$query" AND " # fi # query=$query" COUNT(*)=COUNT(IF(" query=$query" NOT ISNULL("${needs[$k]}"Status.fStartTime) " query=$query" AND NOT ISNULL("${needs[$k]}"Status.fStopTime) " query=$query" AND NOT ISNULL("${needs[$k]}"Status.fAvailable) " query=$query" AND ISNULL("${needs[$k]}"Status.fReturnCode) " # query=$query" , 1, NULL)) " done # if ! echo $query | grep UPDATE >/dev/null 2>&1 # then # query=$query" GROUP BY "${prims[@]} # fi } # function to get todolist # returns the next or the list of next steps function gettodo() { # reset the variable for the number of the next step process= printprocesslog "DEBUG getting todo for step $step..." getstepinfo # get query query=" SELECT "${prims[@]} getstatusquery $2 # order by priority to the the number of the next step to be done query=$query" ORDER BY "$step"Status.fPriority " if [ "$sort" = "" ] then query=$query" ASC " else query=$query" "$sort fi # add limitation in case only one or a limited number of # processes should be executed if [ "$1 " != " " ] then query=$query" limit 0, $1 " fi # print query #printprocesslog "DEBUG gettodo for step $step QUERY: "$query # execute query process=`sendquery` #if ! process=`mysql -s -u $us --password=$pw --host=$ho $db -e " $query "` #then # printprocesslog "ERROR could not query processes from db (program: $program, function gettodo)" # finish #fi # get numbers of next step from mysql result if [ "$process" = "" ] then printprocesslog "DEBUG => nothing to do" finish else primaries=( $process ) num=`expr ${#primaries[@]} / ${#prims[@]} ` fi } # function to get the number of processes which still have to be done function getstatus() { printprocesslog "DEBUG getstatus for step "$step # reset the variable for the number of steps to be done numproc=0 getstepinfo # get query query=" SELECT "${prims[@]} getstatusquery $1 # print query #printprocesslog "DEBUG getstatus for step $step QUERY: "$query # execute query #numproc=`sendquery `#cannot be done with sendquery, because of row counting printprocesslog "DEBUG send query "$query printprocesslog "BLA "`which mysql` if ! numproc=`mysql --defaults-file=$sqlrc -s -e " $query " | wc -l` then printprocesslog "ERROR could not query number of processes from db (program: $program, function getstatus, mysqlsetup $sqlrc)" echo `date +%F\ %T`" ERROR could not query number of processes from db (program: $program, function getstatus, mysqlsetup $sqlrc)" continue fi } # function to set status of a process in the db function setstatus() { # remark: # this function does not include the 'Default' flag # for resetting steps # for dowebplots (there are steps which have no entry in the DB) if [ "$step" = "no" ] then return fi printprocesslog "DEBUG setstatus for step "$step # reset status values starttime=NULL stoptime=NULL availtime=NULL returncode=NULL # evaluate the status values case $@ in start) printprocesslog "DEBUG setstatus start" starttime="Now()" ;; startj) printprocesslog "DEBUG setstatus startj" starttime="'1971-01-01 01:01:01'" # special recognizable datetime, i.e. "reserved by JobManager for processing" ;; stop) case $check in ok) printprocesslog "DEBUG setstatus stop - ok" starttime=noreset stoptime="Now()" if [ "$processingsite" = "$storagesite" ] then availtime="Now()" fi ;; no) printprocesslog "DEBUG setstatus stop - nothing new" check="ok" ;; *) printprocesslog "DEBUG setstatus stop - failed" starttime=noreset stoptime="Now()" if [ "$processingsite" = "$storagesite" ] then availtime="Now()" fi if [ "$check" == "" ] then returncode=1 else returncode=$check fi check="ok" ;; esac ;; *) printprocesslog "ERROR function setstatus got wrong variable" finish ;; esac # get getstepinfo # get the influences from the steps.rc by evaluating the needs of all steps othersteps=`grep $step $steps | grep -v '#' | grep "Needs" | grep -v "$step[.]Needs" | cut -d'.' -f1` # get query query=" UPDATE " getalljoins "set" # set the status values according to the new status of the step query=$query" SET " if ! [ "$starttime" = "noreset" ] then query=$query" "$step"Status.fStartTime=$starttime, " fi query=$query" "$step"Status.fStopTime=$stoptime, "$step"Status.fAvailable=$availtime" query=$query", "$step"Status.fReturnCode=$returncode , "$step"Status.fProcessingSiteKEY=$sitekey " # set also the status values of the influenced steps for otherstep in $othersteps do query=$query", "$otherstep"Status.fStartTime=IF("$otherstep"Status.fStartTime='1970-01-01 00:00:00', '1970-01-01 00:00:00', NULL) " query=$query", "$otherstep"Status.fStopTime=IF("$otherstep"Status.fStartTime='1970-01-01 00:00:00', '1970-01-01 00:00:00', NULL) " query=$query", "$otherstep"Status.fAvailable=NULL " query=$query", "$otherstep"Status.fReturnCode=NULL " query=$query", "$otherstep"Status.fProcessingSiteKEY=NULL " done # give the condition for which step the status values have to be set query=$query" WHERE " if [ "$s" = "" ] then s=0 fi query=$query" "$step"Status."`echo ${prims[0]} | sed -e 's/,//g'`"='${primaries[$s*${#prims[@]}]}'" for (( j=1 ; j < ${#prims[@]} ; j++ )) do query=$query" AND "$step"Status."`echo ${prims[$j]} | sed -e 's/,//g'`"='${primaries[$s*${#prims[@]}+$j]}' " done # add additional query to allow for locking in db if [ "$1" = "start" ] then # process job only if it is not yet being processed # i.e. either StartTime NULL or '1971-01-01 01:01:01' (reserved by JobManager for processing) query=$query" AND (ISNULL("$step"Status.fStartTime) OR "$step"Status.fStartTime='1971-01-01 01:01:01')" fi # add row count to know how many rows have been changed query=$query"; SELECT ROW_COUNT();" # print query #printprocesslog "DEBUG setstatus for step $step QUERY: "$query #echo "DEBUG setstatus for step $step QUERY: "$query # execute query numchanged=`sendquery` # should not be needed anymore once finish does proper exit printprocesslog "DEBUG numchanged "$numchanged if [ "$numchanged" = "" ] then printprocesslog "DEBUG numchanged empty." finish fi if [ $numchanged -gt 0 ] then printprocesslog "INFO successful set of status in DB." #echo "INFO successful set of status in DB." else # action may be taken in script using $numchanged printprocesslog "DEBUG status in DB was already set by another process " #echo "ERROR status in DB was already set by another process " fi } function getdates() { case $1 in # all dates all) printprocesslog "DEBUG getdates case 'all'" dates=( `find $auxdata -mindepth 3 -type d | sort -r | sed "s/\${auxdata_for_sed}//g" | sed -e 's/^\///'` ) ;; # certain date [0-9][0-9][0-9][0-9]/[0-9][0-9]/[0-9][0-9]|[0-9][0-9][0-9][0-9]/[0-9][0-9]/[0-9][0-9]-[0-9][0-9][0-9]) d=`echo $1 | grep -o '[0-9][0-9][0-9][0-9]/[0-9][0-9]/[0-9][0-9]'` range=`echo $1 | grep -o '[0-9][0-9][0-9]$'` range=`echo $range | sed -e 's/^0//' -e 's/^0//'` printprocesslog "DEBUG getdates - certain date "$d"." dates=( $d ) if [ "$range" != "" ] then printprocesslog "DEBUG getdates - add the last "$range" days." yy=`echo $d | cut -c 1-4` mm=`echo $d | cut -c 6-7` dd=`echo $d | cut -c 9-10` for (( numdates=1 ; numdates <= $range ; numdates++ )) do numhours=`echo " 12 + ( $numdates - 1 ) * 24 " | bc -l` dates=( ${dates[@]} `date +%Y/%m/%d --date=$yy/$mm/$dd"-"$numhours"hour"` ) done fi ;; # certain number of dates (between 0 and 9999) [1-9][0-9][0-9][0-9]|[1-9][0-9][0-9]|[1-9][0-9]|[1-9]) # get last n nights printprocesslog "DEBUG getdates - get the last "$1" days." for (( numdates=1 ; numdates <= $1 ; numdates++ )) do numhours=`echo " 12 + ( $numdates - 1 ) * 24 " | bc -l` dates=( ${dates[@]} `date +%Y/%m/%d --date="-"$numhours"hour"` ) done # hour-dependent number of dates if [ "$2" != "" ] && [ "$3" != "" ] then # get current hour hour=`date +%k` if [ $hour -le $2 ] || [ $hour -ge $3 ] then printprocesslog "DEBUG getdates - get the current night." dates=( `date +%Y/%m/%d --date="-19hour"` ) fi fi ;; # certain number of dates in the future (between 0 and 9) +[1-9]) # get next n nights printprocesslog "DEBUG getdates - get the next "$1" days (incl today)." for (( numdates=1 ; numdates <= $1 ; numdates++ )) do numhours=`echo " 0 + ( $numdates - 1 ) * 24 " | bc -l` dates=( ${dates[@]} `date +%Y/%m/%d --date="+"$numhours"hour"` ) done # hour-dependent number of dates if [ "$2" != "" ] && [ "$3" != "" ] then # get current hour hour=`date +%k` if [ $hour -le $2 ] || [ $hour -ge $3 ] then printprocesslog "DEBUG getdates - get the current night." dates=( `date +%Y/%m/%d --date="-12hour"` ) fi fi ;; *) # nothing valid given echo "Please give valid option (YYYY/MM/DD[-RRR] or 1-9999 or +0-9)" finish ;; esac } # missing: implement usage of this function in Fill*.sh function check_file_avail() { if [ "$1" = "" ] then echo "Please give file name as first argument." finish fi printprocesslog "INFO checking availability of "$1 if ! [ -e $1 ] then filenight=`basename $1 | cut -c 1-8` # treat raw files differently than auxfiles checkraw=`echo $1 | grep -E -o raw` if [ "$checkraw" = "raw" ] then if [ $filenight -le $checknight ] then printprocesslog "WARN "$1" not found." else printprocesslog "INFO "$1" not found." fi return 1 fi # only for aux files check of DB is needed # treat ratescan files checkratescan=`echo $1 | grep -E -o RATE_SCAN_DATA` if [ "$checkratescan" = "RATE_SCAN_DATA" ] && [ $filenight -gt 20130408 ] then #query="SELECT fMeasurementTypeKey from MeasurementType WHERE fMeasurementTypeName like 'Ratescan%'" #ratescantypes=`sendquery` query="SELECT COUNT(*) FROM Schedule WHERE fStart BETWEEN "$scheduletart" AND "$schedulestop" AND fMeasurementTypeKey IN (5,8) " numratescans=`sendquery` if [ $numratescans -gt 0 ] then printprocesslog "ERROR "$1" not found." else printprocesslog "INFO "$1" not found." fi return 1 fi query="SELECT COUNT(*) FROM RunInfo WHERE fNight="$filenight" AND fRunTypeKey=1" numdatruns=`sendquery` # for some files it is more severe when they are missing checkfile=`echo $1 | grep -E -o 'DRIVE'\|'RATES'` # print INFO/WARN/ERROR depending on severity if [ $numdatruns -eq 0 ] then # in case no data runs are available from this night, it's not a problem if files are missing printprocesslog "INFO "$1" not found." else if [ "$checkfile" != "" ] then # drive and trigger-rates files are needed for analysis #printprocesslog "ERROR "$1" not found." if [ $filenight -le $checknight ] then printprocesslog "ERROR "$1" not found." else printprocesslog "WARN "$1" not found. ("$filenight" - "$checknight")" fi else # other aux-files would be good to have #printprocesslog "WARN "$1" not found." if [ $filenight -le $checknight ] then printprocesslog "WARN "$1" not found. ("$filenight" - "$checknight")" else printprocesslog "INFO "$1" not found." fi fi fi return 1 fi # file available return 0 }