#!/bin/bash # this script has been written to run on La Palma on the machine data # i.e. paths are only working on this machine source `dirname $0`/../Sourcefile.sh printprocesslog "INFO starting "$0 logfile=$runlogpath"/ZipRawLP-"$datetime".log" date >> $logfile if ! ls /daq/raw >/dev/null 2>&1 then printprocesslog "ERROR /daq/raw is not available." finish fi # get dates if [ "$certaindate" != "" ] then getdates $certaindate else # get all night #getdates "all" # get last 3 nights if hour between 7 and 19h, else only current night getdates 3 7 19 fi # setup to use ftools source $HEADAS/headas-init.sh delaytime=5 # do rsync for rawfiles of these dates for date in ${dates[@]} do echo "" >> $logfile 2>&1 rawdir=/daq/raw/$date echo `date`": processing files in "$rawdir >> $logfile 2>&1 printprocesslog "INFO processing files in "$rawdir #echo "INFO processing files in "$rawdir # check if data are available from that night if ! [ -d $rawdir ] then echo `date`": no data available in "$rawdir >> $logfile 2>&1 printprocesslog "INFO no data available in "$rawdir continue fi zipdir=/loc_data/zipraw/$date if ! [ -d $zipdir ] then # create output directory for zip makedir $zipdir >> $logfile 2>&1 fi # find all fits-files starting with the oldest file echo `date`": finding files to be zipped in $rawdir..." >> $logfile 2>&1 printprocesslog "INFO finding files to be zipped in "$rawdir"..." fitsfiles=`find $rawdir -type f -name '*fits'| sort ` if [ ${#fitsfiles[@]} -eq 0 ] then echo `date`": no files to be zipped in $rawdir..." >> $logfile 2>&1 printprocesslog "INFO no files to be zipped in "$rawdir"..." continue fi # loop to zip files echo `date`": zipping files in $rawdir..." >> $logfile 2>&1 printprocesslog "INFO zipping files in "$rawdir"..." for file in $fitsfiles do # filename for temporary and final zipfile zipfile=`echo $file | sed -e 's/daq/loc_data/g' -e 's/raw/zipraw/' -e 's/fits/fits.gz/'` zipfiletmp=`echo $file | sed -e 's/daq/loc_data/g' -e 's/raw/zipraw/' -e 's/fits/fits.tmp.gz/'` # check if zipped file already exists if [ -e $zipfile ] then continue fi # check if raw file was accessed in the last $delaytime minutes isnew=`find $file -amin -$delaytime` if [ "$isnew" != "" ] then echo $file" is not older than $delaytime min => continue" >> $logfile 2>&1 printprocesslog "INFO "$file" is not older than $delaytime min => continue" continue fi # not needed anymore, as only complete files are transferred from newdaq to daq # # check if file is already finished # # original file on daq (if data was taken on daq # origfile=`echo $file | sed -e 's/loc_data/daq/'` # if [ -e $origfile ] # then # # get time of last modification as seconds since Epoch for both files # timeorig=`stat -c %Y $origfile` # timecopy=`stat -c %Y $file` # # compare times # if ! [ $timeorig -eq $timecopy ] # then # # if times are not the same, the file is still open => no zip # echo `date`": file "$file" not yet closed => continue" >> $logfile 2>&1 # printprocesslog "WARN file "$file" not yet closed => continue" # continue # fi # else # # if the origfile doesn't exist, the data was probably written not on daq but on data # echo `date`": file "$file" was probably taken on data and not daq " >> $logfile 2>&1 # printprocesslog "WARN file "$file" was probably taken on data and not daq " # fi # # update the raw file with the checksums # ftchecksum update=yes $file >> $logfile 2>&1 # check=$? # if [ $check -eq 0 ] # then # echo `date`": file "$file" was updated with the checksums " >> $logfile 2>&1 # else # echo `date`": problem when updating file "$file" (ftchecksum exited with "$check")" >> $logfile 2>&1 # echo `date`": problem when updating file "$file" (ftchecksum exited with "$check")" # continue # fi echo `date`": zipping "$file" to "$zipfile" ..." >> $logfile 2>&1 printprocesslog "INFO zipping "$file" to "$zipfile" ..." #echo "INFO zipping "$file" to "$zipfile" ..." source `dirname $0`/../Sourcefile.sh # zip file to stdout and pipe it to outputfile echo "pv --rate-limit $limitpigz $file | pigz -1 -c -f -p 2 > $zipfiletmp" >> $logfile 2>&1 pv --rate-limit $limitpigz $file | pigz -1 -c -f -p 2 > $zipfiletmp statuspigz=( `echo ${PIPESTATUS[@]}` ) printprocesslog "DEBUG PIPESTATUS:"${statuspigz[@]} echo " PIPESTATUS:"${statuspigz[@]} >> $logfile 2>&1 if [ ${statuspigz[0]} -eq 0 ] && [ ${statuspigz[1]} -eq 0 ] then # if successful, move temporary to final zipfile printprocesslog "INFO move "$zipfiletmp" to "$zipfile" ..." mv -v $zipfiletmp $zipfile >> $logfile 2>&1 else # if not successful, remove temporary zipfile printprocesslog "WARN pigz or pv failed (PIPESTATUS:"${statuspigz[@]}")." echo "WARN pigz or pv failed (PIPESTATUS:"${statuspigz[@]}")." >> $logfile 2>&1 finish printprocesslog "INFO remove "$zipfiletmp"..." rm -v $zipfiletmp >> $logfile 2>&1 diskusage=( `df -P /loc_data | grep /loc_data ` ) # check if more than ~ 10 GB are left on /loc_data if [ ${diskusage[3]} -lt 10000000 ] then echo "WARN less than 10 GB left on /loc_data on data " >> $logfile 2>&1 printprocesslog "WARN less than 10 GB left on /loc_data on data " finish fi fi done done echo "finished zipping..." >> $logfile 2>&1 finish