| 1 | #include <boost/regex.hpp>
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| 2 | #include <boost/filesystem.hpp>
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| 3 | #include <boost/algorithm/string/join.hpp>
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| 4 |
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| 5 | #include "Database.h"
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| 6 |
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| 7 | #include "tools.h"
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| 8 | #include "Time.h"
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| 9 | #include "Configuration.h"
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| 10 |
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| 11 | #include <TROOT.h>
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| 12 | #include <TFile.h>
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| 13 | #include <TTree.h>
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| 14 | #include <TLeaf.h>
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| 15 | #include <TError.h>
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| 16 |
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| 17 | using namespace std;
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| 18 | namespace fs = boost::filesystem;
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| 19 |
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| 20 | // ------------------------------------------------------------------------
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| 21 |
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| 22 | struct Map : pair<string, string>
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| 23 | {
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| 24 | Map() { }
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| 25 | };
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| 26 |
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| 27 | std::istream &operator>>(std::istream &in, Map &m)
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| 28 | {
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| 29 | const istreambuf_iterator<char> eos;
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| 30 | string txt(istreambuf_iterator<char>(in), eos);
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| 31 |
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| 32 | const boost::regex expr("((.*)[^\\\\])/(.*)");
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| 33 | boost::smatch match;
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| 34 | if (!boost::regex_match(txt, match, expr))
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| 35 | throw runtime_error("Could not evaluate map argument: "+txt);
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| 36 |
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| 37 | m.first = match[1].str();
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| 38 | m.second = match[3].str();
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| 39 |
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| 40 | return in;
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| 41 | }
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| 42 |
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| 43 |
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| 44 | void SetupConfiguration(Configuration &conf)
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| 45 | {
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| 46 | po::options_description control("Root to SQL");
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| 47 | control.add_options()
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| 48 | ("uri,u", var<string>()->required(), "Database link as in\n\tuser:password@server[:port]/database[?compress=0|1].")
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| 49 | ("file", var<string>()->required(), "The root file to read from")
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| 50 | ("create", po_switch(), "Create the database if not existing")
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| 51 | ("drop", po_switch(), "Drop the table (implies create)")
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| 52 | ("tree,t", var<string>("Events"), "Name of the root tree to convert")
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| 53 | ("table", var<string>(""), "Name of the table to use (default is the tree name)")
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| 54 | ("map", vars<Map>(), "A regular expression which is applied to the leaf name befoee it is used as SQL column name)")
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| 55 | ("sql-type", vars<Map>(), "Allows to overwrite the calculated SQL type for a given column e.g. 'sql-column-name/UNSIGNED IN'")
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| 56 | ("ignore", vars<string>(), "Ignore the given leaf, if the given regular expression matches")
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| 57 | ("primary", vars<string>(), "List of columns to be used as primary keys during table creation (in connection with --create)")
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| 58 | ("first", var<int64_t>(int64_t(0)), "First event to start with (default: 0), mainly for test purpose")
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| 59 | ("max", var<int64_t>(int64_t(0)), "Maximum number of events to process (0: all), mainly for test purpose")
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| 60 | ("engine", var<string>(""), "Database engine to be used when a new table is created")
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| 61 | ("row-format", var<string>(""), "Defines the ROW_FORMAT keyword for table creation")
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| 62 | ("duplicate", vars<string>(), "Specifies an assignment_list for an 'ON DUPLICATE KEY UPDATE' expression")
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| 63 | ("ignore-errors", po_switch(), "Adds the IGNORE keyword to the INSERT query (turns errors into warnings, ignores rows with errors)")
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| 64 | ("const.*", var<string>(), "Insert a constant number into the given column (--const.mycolumn=5). A special case is `/.../.../`")
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| 65 | ("conditional", po_switch(), "Conditional insert. Only insert if no entry exists yet with the constants defined by --const")
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| 66 | ("delete", po_switch(), "Delete all entries first which fit all constant columns defined by --const")
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| 67 | ("index", po_switch(), "If a table is created, all const columns are used as a single index (INDEX)")
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| 68 | ("unique", po_switch(), "If a table is created, all const columns are used as a unqiue index (UNIQUE)")
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| 69 | ;
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| 70 |
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| 71 | po::options_description debug("Debug options");
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| 72 | debug.add_options()
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| 73 | ("no-insert", po_switch(), "Does not insert any data into the table")
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| 74 | ("dry-run", po_switch(), "Skip any query which changes the databse (might result in consecutive failures)")
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| 75 | ("print-connection", po_switch(), "Print database connection information")
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| 76 | ("print-ls", po_switch(), "Calls TFile::ls()")
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| 77 | ("print-branches", po_switch(), "Print the branches found in the tree")
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| 78 | ("print-leaves", po_switch(), "Print the leaves found in the tree (this is what is processed)")
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| 79 | ("print-insert", po_switch(), "Print the INSERT query (note that it contains all data)")
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| 80 | ("print-create", po_switch(), "Print the CREATE query")
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| 81 | ("print-select", po_switch(), "Print the SELECT query for the conditional execution")
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| 82 | ("print-delete", po_switch(), "Print the DELETE query")
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| 83 | ("verbose,v", var<uint16_t>(1), "Verbosity (0: quiet, 1: default, 2: more, 3, ...)")
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| 84 | ;
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| 85 |
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| 86 | po::positional_options_description p;
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| 87 | p.add("file", 1); // The 1st positional options (n=1)
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| 88 |
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| 89 | conf.AddOptions(control);
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| 90 | conf.AddOptions(debug);
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| 91 | conf.SetArgumentPositions(p);
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| 92 | }
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| 93 |
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| 94 | void PrintUsage()
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| 95 | {
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| 96 | cout <<
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| 97 | "root2sql - Fills the data from a root file into a database\n"
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| 98 | "\n"
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| 99 | "For convenience, this documentation uses the extended version of the options, "
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| 100 | "refer to the output below to get the abbreviations.\n"
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| 101 | "\n"
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| 102 | "This is a general purpose tool to fill the contents of a root file into a database "
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| 103 | "as long as this is technically possible and makes sense. Note that root can even "
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| 104 | "write complex data like a TH1F into a database, this is not the purpose of this "
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| 105 | "program.\n"
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| 106 | "\n"
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| 107 | "Each root tree has branches and leaves (the basic data types). These leaves can "
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| 108 | "be read independently of the classes which were used to write the root file. "
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| 109 | "The default tree to read from is 'Events' but the name can be overwritten "
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| 110 | "using --tree. The default table name to fill the data into is identical to "
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| 111 | "the tree name. It can be overwritten using --table.\n"
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| 112 | "\n"
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| 113 | "To get a list of the contents (keys and trees) of a root file, you can use --print-ls. "
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| 114 | "The name of each column to which data is filled from a leave is obtained from "
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| 115 | "the leaves' names. The leave names can be checked using --print-leaves. "
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| 116 | "A --print-branches exists for convenience to print only the high-level branches. "
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| 117 | "Sometimes these names might be quite unconvenient like MTime.fTime.fMilliSec or "
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| 118 | "just MHillas.fWidth. To allow to simplify column names, regular expressions "
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| 119 | "(using boost's regex) can be defined to change the names. Note that these regular "
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| 120 | "expressions are applied one by one on each leaf's name. A valid expression could "
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| 121 | "be:\n"
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| 122 | " --map=MHillas\\.f/\n"
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| 123 | "which would remove all occurances of 'MHillas.f'. This option can be used more than "
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| 124 | "once. They are applied in sequence. A single match does not stop the sequence.\n"
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| 125 | "\n"
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| 126 | "Sometimes it might also be convenient to skip a leaf. This can be done with "
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| 127 | "the --ignore resource. If the given regular expresion yields a match, the "
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| 128 | "leaf will be ignored. Note that the regular expression works on the raw-name "
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| 129 | "of the leaf not the readily mapped SQL column names. Example:\n"
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| 130 | " --ignore=ThetaSq\\..*\n"
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| 131 | "will skip all leaved which start with 'ThetaSq.'. This option can be used"
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| 132 | "more than once.\n"
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| 133 | "\n"
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| 134 | "The data type of each column is kept as close as possible to the leaves' data "
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| 135 | "types. If for some reason this is not wanted, the data type of the SQL column "
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| 136 | "can be overwritten with --sql-type sql-column/sql-ytpe, for example:\n"
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| 137 | " --sql-type=FileId/UNSIGNED INT\n"
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| 138 | "while the first argument of the name of the SQL column to which the data type "
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| 139 | "should be applied. The second column is the basic SQL data type. The option can "
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| 140 | "be given more than once.\n"
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| 141 | "\n"
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| 142 | "Database interaction:\n"
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| 143 | "\n"
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| 144 | "To drop an existing table, --drop can be used.\n"
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| 145 | "\n"
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| 146 | "To create a table according to theSQL column names and data types, --create "
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| 147 | "can be used. The query used can be printed with --print-create even --create "
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| 148 | "has not been specified.\n"
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| 149 | "\n"
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| 150 | "To choose the columns which should become primary keys, use --primary, "
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| 151 | "for example:\n"
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| 152 | " --primary=col1\n"
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| 153 | "To define more than one column as primary key, the option can be given more than "
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| 154 | "once. Note that the combination of these columns must be unique.\n"
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| 155 | "\n"
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| 156 | "All columns are created as NOT NULL as default. To force a database engine "
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| 157 | "and/or a storage format, use --engine and --row-format.\n"
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| 158 | "\n"
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| 159 | "Usually, the INSERT query would fail if the PRIMARY key exists already. "
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| 160 | "This can be avoided using the 'ON DUPLICATE KEY UPDATE' directive. With the "
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| 161 | "--duplicate, you can specify what should be updated in case of a duplicate key. "
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| 162 | "To keep the row untouched, you can just update the primary key "
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| 163 | "with the identical primary key, e.g. --duplicate='MyPrimary=VALUES(MyPrimary)'. "
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| 164 | "The --duplicate resource can be specified more than once to add more expressions "
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| 165 | "to the assignment_list. For more details, see the MySQL manual.\n"
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| 166 | "\n"
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| 167 | "For debugging purpose, or to just create or drop a table, the final insert "
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| 168 | "query can be skipped using --no-insert. Note that for performance reason, "
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| 169 | "all data is collected in memory and a single INSERT query is issued at the "
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| 170 | "end.\n"
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| 171 | "\n"
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| 172 | "Another possibility is to add the IGNORE keyword to the INSERT query by "
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| 173 | "--ignore-errors, which essentially ignores all errors and turns them into "
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| 174 | "warnings which are printed after the query succeeded.\n"
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| 175 | "\n"
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| 176 | "Using a higher verbosity level (-v), an overview of the written columns or all "
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| 177 | "processed leaves is printed depending on the verbosity level. The output looks "
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| 178 | "like the following\n"
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| 179 | " Leaf name [root data type] (SQL name)\n"
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| 180 | "for example\n"
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| 181 | " MTime.fTime.fMilliSec [Long64_t] (MilliSec)\n"
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| 182 | "which means that the leaf MTime.fTime.fMilliSec is detected to be a Long64_t "
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| 183 | "which is filled into a column called MilliSec. Leaves with non basic data types "
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| 184 | "are ignored automatically and are marked as (-n/a-). User ignored columns "
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| 185 | "are marked as (-ignored-).\n"
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| 186 | "\n"
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| 187 | "A constant value for the given file can be inserted by using the --const directive. "
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| 188 | "For example --const.mycolumn=42 would insert 42 into a column called mycolumn. "
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| 189 | "The column is created as INT UNSIGNED as default which can be altered by "
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| 190 | "--sql-type. A special case is a value of the form `/regex/format/`. Here, the given "
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| 191 | "regular expression is applied to the filename and it is newly formated with "
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| 192 | "the new format string. Uses the standard formatting rules to replace matches "
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| 193 | "(those used by ECMAScript's replace method).\n"
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| 194 | "\n"
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| 195 | "Usually the previously defined constant values are helpful to create an index "
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| 196 | "which relates unambiguously the inserted data to the file. It might be useful "
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| 197 | "to delete all data which belongs to this particular file before new data is "
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| 198 | "entered. This can be achieved with the `--delete` directive. It deletes all "
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| 199 | "data from the table before inserting new data which fulfills the condition "
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| 200 | "defined by the `--const` directives.\n"
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| 201 | "\n"
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| 202 | "The constant values can also be used for a conditional execution (--conditional). "
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| 203 | "If any row with the given constant values are found, the execution is stopped "
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| 204 | "(note that this happend after the table drop/create but before the delete/insert.\n"
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| 205 | "\n"
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| 206 | "To ensure efficient access for a conditonal execution, it makes sense to have "
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| 207 | "an index created for those columns. This can be done during table creation "
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| 208 | "with the --index option.\n"
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| 209 | "\n"
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| 210 | "To create the index as a UNIQUE INDEX, you can use the --unique option which "
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| 211 | "implies --index.\n"
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| 212 | "\n"
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| 213 | "If a query failed, the query is printed to stderr together with the error message. "
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| 214 | "For the main INSERT query, this is only true if the verbosity level is at least 2 "
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| 215 | "or the query has less than 80*25 bytes.\n"
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| 216 | "\n"
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| 217 | "In case of success, 0 is returned, a value>0 otherwise.\n"
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| 218 | "\n"
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| 219 | "Usage: root2sql [options] -uri URI rootfile.root\n"
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| 220 | "\n"
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| 221 | ;
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| 222 | cout << endl;
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| 223 | }
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| 224 |
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| 225 | enum BasicType_t
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| 226 | {
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| 227 | kNone = 0,
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| 228 | kConst,
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| 229 | kFloat,
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| 230 | kDouble,
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| 231 | kInt16,
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| 232 | kUInt16,
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| 233 | kInt32,
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| 234 | kUInt32,
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| 235 | kInt64,
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| 236 | kUInt64,
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| 237 | };
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| 238 |
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| 239 | static const map<string, pair<BasicType_t, string>> ConvRoot =
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| 240 | {
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| 241 | { "Float_t", { kFloat, "FLOAT" } },
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| 242 | { "Double_t", { kDouble, "DOUBLE" } },
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| 243 | { "ULong64_t", { kUInt64, "BIGINT UNSIGNED" } },
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| 244 | { "Long64_t", { kInt64, "BIGINT" } },
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| 245 | { "UInt_t", { kUInt32, "INT UNSIGNED" } },
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| 246 | { "Int_t", { kInt32, "INT" } },
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| 247 | { "UShort_t", { kUInt16, "SMALLINT UNSIGNED" } },
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| 248 | { "Short_t", { kInt16, "SMALLINT" } },
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| 249 | };
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| 250 |
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| 251 | struct Container
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| 252 | {
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| 253 | static map<void*, size_t> counter;
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| 254 |
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| 255 | string branch; // branch name
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| 256 | string column; // column name
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| 257 | BasicType_t type;
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| 258 | size_t num;
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| 259 | void *ptr;
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| 260 |
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| 261 | Container(const string &b, const string &c, const BasicType_t &t, const size_t &n) : branch(b), column(c), type(t), num(n), ptr(0)
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| 262 | {
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| 263 | switch (t)
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| 264 | {
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| 265 | case kFloat: ptr = new Float_t[n]; break;
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| 266 | case kDouble: ptr = new Double_t[n]; break;
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| 267 | case kInt16: ptr = new Short_t[n]; break;
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| 268 | case kUInt16: ptr = new UShort_t[n]; break;
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| 269 | case kInt32: ptr = new Int_t[n]; break;
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| 270 | case kUInt32: ptr = new UInt_t[n]; break;
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| 271 | case kInt64: ptr = new Long64_t[n]; break;
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| 272 | case kUInt64: ptr = new ULong64_t[n]; break;
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| 273 | case kConst:
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| 274 | case kNone:
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| 275 | break;
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| 276 | }
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| 277 | counter[ptr]++;
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| 278 | }
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| 279 | Container(const string &c, const string &value) : branch(value), column(c), type(kConst), num(1), ptr(0)
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| 280 | {
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| 281 | }
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| 282 |
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| 283 | Container(const Container &c) : branch(c.branch), column(c.column), type(c.type), num(c.num), ptr(c.ptr)
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| 284 | {
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| 285 | counter[ptr]++;
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| 286 | }
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| 287 |
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| 288 | ~Container()
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| 289 | {
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| 290 | counter[ptr]--;
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| 291 | if (counter[ptr]==0)
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| 292 | ::operator delete[](ptr); // It seems root is deleting it already
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| 293 | }
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| 294 |
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| 295 | string fmt(const size_t &index) const
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| 296 | {
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| 297 | ostringstream str;
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| 298 |
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| 299 | switch (type)
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| 300 | {
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| 301 | case kFloat: str << setprecision(8) << reinterpret_cast<Float_t*>(ptr)[index]; break;
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| 302 | case kDouble: str << setprecision(16) << reinterpret_cast<Double_t*>(ptr)[index]; break;
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| 303 | case kInt16: str << reinterpret_cast<Short_t*>(ptr)[index]; break;
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| 304 | case kUInt16: str << reinterpret_cast<UShort_t*>(ptr)[index]; break;
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| 305 | case kInt32: str << reinterpret_cast<Int_t*>(ptr)[index]; break;
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| 306 | case kUInt32: str << reinterpret_cast<UInt_t*>(ptr)[index]; break;
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| 307 | case kInt64: str << reinterpret_cast<Long64_t*>(ptr)[index]; break;
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| 308 | case kUInt64: str << reinterpret_cast<ULong64_t*>(ptr)[index]; break;
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| 309 | case kConst: str << branch; break;
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| 310 | case kNone:
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| 311 | break;
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| 312 | }
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| 313 |
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| 314 | //if (str.str()=="nan" || str.str()=="-nan" || str.str()=="inf" || str.str()=="-inf")
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| 315 | // return "NULL";
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| 316 |
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| 317 | return str.str();
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| 318 | }
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| 319 | };
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| 320 |
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| 321 | map<void*, size_t> Container::counter;
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| 322 |
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| 323 | void ErrorHandlerAll(Int_t level, Bool_t abort, const char *location, const char *msg)
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| 324 | {
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| 325 | if (string(msg).substr(0,24)=="no dictionary for class ")
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| 326 | return;
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| 327 | if (string(msg).substr(0,15)=="unknown branch ")
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| 328 | return;
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| 329 |
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| 330 | DefaultErrorHandler(level, abort, location, msg);
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| 331 | }
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| 332 |
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| 333 | int main(int argc, const char* argv[])
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| 334 | {
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| 335 | Time start;
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| 336 |
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| 337 | gROOT->SetBatch();
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| 338 | SetErrorHandler(ErrorHandlerAll);
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| 339 |
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| 340 | Configuration conf(argv[0]);
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| 341 | conf.SetPrintUsage(PrintUsage);
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| 342 | SetupConfiguration(conf);
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| 343 |
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| 344 | if (!conf.DoParse(argc, argv))
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| 345 | return 127;
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| 346 |
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| 347 | // ----------------------------- Evaluate options --------------------------
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| 348 | const string uri = conf.Get<string>("uri");
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| 349 | const string file = conf.Get<string>("file");
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| 350 | const string tree = conf.Get<string>("tree");
|
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| 351 | const string table = conf.Get<string>("table").empty() ? tree : conf.Get<string>("table");
|
|---|
| 352 |
|
|---|
| 353 | const uint16_t verbose = conf.Get<uint16_t>("verbose");
|
|---|
| 354 | const int64_t first = conf.Get<int64_t>("first");
|
|---|
| 355 | const int64_t max = conf.Get<int64_t>("max");
|
|---|
| 356 |
|
|---|
| 357 | const bool drop = conf.Get<bool>("drop");
|
|---|
| 358 | const bool create = conf.Get<bool>("create") || drop;
|
|---|
| 359 | const bool noinsert = conf.Get<bool>("no-insert");
|
|---|
| 360 | const bool dry_run = conf.Get<bool>("dry-run");
|
|---|
| 361 | const bool conditional = conf.Get<bool>("conditional");
|
|---|
| 362 | const bool run_delete = conf.Get<bool>("delete");
|
|---|
| 363 | const bool index = conf.Get<bool>("index");
|
|---|
| 364 | const bool unique = conf.Get<bool>("unique");
|
|---|
| 365 |
|
|---|
| 366 | const string engine = conf.Get<string>("engine");
|
|---|
| 367 | const string row_format = conf.Get<string>("row-format");
|
|---|
| 368 |
|
|---|
| 369 | const vector<string> duplicate = conf.Vec<string>("duplicate");
|
|---|
| 370 |
|
|---|
| 371 | const bool ignore_errors = conf.Get<bool>("ignore-errors");
|
|---|
| 372 |
|
|---|
| 373 | const bool print_connection = conf.Get<bool>("print-connection");
|
|---|
| 374 | const bool print_ls = conf.Get<bool>("print-ls");
|
|---|
| 375 | const bool print_branches = conf.Get<bool>("print-branches");
|
|---|
| 376 | const bool print_leaves = conf.Get<bool>("print-leaves");
|
|---|
| 377 | const bool print_create = conf.Get<bool>("print-create");
|
|---|
| 378 | const bool print_insert = conf.Get<bool>("print-insert");
|
|---|
| 379 | const bool print_select = conf.Get<bool>("print-select");
|
|---|
| 380 | const bool print_delete = conf.Get<bool>("print-delete");
|
|---|
| 381 |
|
|---|
| 382 | const vector<Map> mymap = conf.Vec<Map>("map");
|
|---|
| 383 | const vector<Map> sqltypes = conf.Vec<Map>("sql-type");
|
|---|
| 384 | const vector<string> _ignore = conf.Vec<string>("ignore");
|
|---|
| 385 | const vector<string> primary = conf.Vec<string>("primary");
|
|---|
| 386 |
|
|---|
| 387 | // -------------------------------------------------------------------------
|
|---|
| 388 |
|
|---|
| 389 | if (verbose>0)
|
|---|
| 390 | {
|
|---|
| 391 | cout << "\n-------------------------- Evaluating file -------------------------\n";
|
|---|
| 392 | cout << "Start Time: " << Time::sql << Time(Time::local) << endl;
|
|---|
| 393 | }
|
|---|
| 394 |
|
|---|
| 395 | TFile f(file.c_str());
|
|---|
| 396 | if (f.IsZombie())
|
|---|
| 397 | {
|
|---|
| 398 | cerr << "Could not open file " << file << endl;
|
|---|
| 399 | return 1;
|
|---|
| 400 | }
|
|---|
| 401 |
|
|---|
| 402 | if (verbose>0 && !print_ls)
|
|---|
| 403 | cout << "File: " << file << endl;
|
|---|
| 404 |
|
|---|
| 405 | if (print_ls)
|
|---|
| 406 | {
|
|---|
| 407 | cout << '\n';
|
|---|
| 408 | f.ls();
|
|---|
| 409 | cout << '\n';
|
|---|
| 410 | }
|
|---|
| 411 |
|
|---|
| 412 | TTree *T = 0;
|
|---|
| 413 | f.GetObject(tree.c_str(), T);
|
|---|
| 414 | if (!T)
|
|---|
| 415 | {
|
|---|
| 416 | cerr << "Could not open tree " << tree << endl;
|
|---|
| 417 | return 2;
|
|---|
| 418 | }
|
|---|
| 419 |
|
|---|
| 420 | if (verbose>0)
|
|---|
| 421 | cout << "Tree: " << tree << endl;
|
|---|
| 422 |
|
|---|
| 423 | T->SetMakeClass(1);
|
|---|
| 424 |
|
|---|
| 425 | TObjArray *branches = T->GetListOfBranches();
|
|---|
| 426 | TObjArray *leaves = T->GetListOfLeaves();
|
|---|
| 427 |
|
|---|
| 428 | if (print_branches)
|
|---|
| 429 | {
|
|---|
| 430 | cout << '\n';
|
|---|
| 431 | branches->Print();
|
|---|
| 432 | }
|
|---|
| 433 |
|
|---|
| 434 | if (verbose>0)
|
|---|
| 435 | cout << T->GetEntriesFast() << " events found." << endl;
|
|---|
| 436 |
|
|---|
| 437 |
|
|---|
| 438 | if (verbose>0)
|
|---|
| 439 | cout << branches->GetEntries() << " branches found." << endl;
|
|---|
| 440 |
|
|---|
| 441 | if (print_leaves)
|
|---|
| 442 | {
|
|---|
| 443 | cout << '\n';
|
|---|
| 444 | leaves->Print();
|
|---|
| 445 | }
|
|---|
| 446 | if (verbose>0)
|
|---|
| 447 | cout << leaves->GetEntries() << " leaves found." << endl;
|
|---|
| 448 |
|
|---|
| 449 | string query =
|
|---|
| 450 | "CREATE TABLE IF NOT EXISTS `"+table+"`\n"
|
|---|
| 451 | "(\n";
|
|---|
| 452 |
|
|---|
| 453 | vector<Container> vec;
|
|---|
| 454 |
|
|---|
| 455 | const auto fixed = conf.GetWildcardOptions("const.*");
|
|---|
| 456 |
|
|---|
| 457 | string where;
|
|---|
| 458 | vector<string> vindex;
|
|---|
| 459 | for (auto it=fixed.cbegin(); it!=fixed.cend(); it++)
|
|---|
| 460 | {
|
|---|
| 461 | const string name = it->substr(6);
|
|---|
| 462 | string val = conf.Get<string>(*it);
|
|---|
| 463 |
|
|---|
| 464 | boost::smatch match;
|
|---|
| 465 | if (boost::regex_match(val, match, boost::regex("\\/(.+)(?<!\\\\)\\/(.*)(?<!\\\\)\\/")))
|
|---|
| 466 | {
|
|---|
| 467 | const string reg = match[1];
|
|---|
| 468 | const string fmt = match[2];
|
|---|
| 469 |
|
|---|
| 470 | val = boost::regex_replace(file, boost::regex(reg), fmt.empty()?"$0":fmt,
|
|---|
| 471 | boost::regex_constants::format_default|boost::regex_constants::format_no_copy);
|
|---|
| 472 |
|
|---|
| 473 | if (verbose>0)
|
|---|
| 474 | {
|
|---|
| 475 | cout << "Regular expression detected for constant column `" << *it << "`\n";
|
|---|
| 476 | cout << "Filename converted with /" << reg << "/ to /" << fmt << "/\n";
|
|---|
| 477 | cout << "Filename: " << file << '\n';
|
|---|
| 478 | cout << "Result: " << val << endl;
|
|---|
| 479 | }
|
|---|
| 480 | }
|
|---|
| 481 |
|
|---|
| 482 | if (verbose>2)
|
|---|
| 483 | cout << "\n" << val << " [-const-]";
|
|---|
| 484 | if (verbose>1)
|
|---|
| 485 | cout << " (" << name << ")";
|
|---|
| 486 |
|
|---|
| 487 | string sqltype = "INT UNSIGNED";
|
|---|
| 488 |
|
|---|
| 489 | for (auto m=sqltypes.cbegin(); m!=sqltypes.cend(); m++)
|
|---|
| 490 | if (m->first==name)
|
|---|
| 491 | sqltype = m->second;
|
|---|
| 492 |
|
|---|
| 493 | if (!vec.empty())
|
|---|
| 494 | query += ",\n";
|
|---|
| 495 | query += " `"+name+"` "+sqltype+" NOT NULL COMMENT '--user--'";
|
|---|
| 496 |
|
|---|
| 497 | vec.emplace_back(name, val);
|
|---|
| 498 | where += " AND `"+name+"`="+val;
|
|---|
| 499 | vindex.emplace_back(name);
|
|---|
| 500 | }
|
|---|
| 501 |
|
|---|
| 502 | const size_t nvec = vec.size();
|
|---|
| 503 |
|
|---|
| 504 | TIter Next(leaves);
|
|---|
| 505 | TObject *o = 0;
|
|---|
| 506 | while ((o=Next()))
|
|---|
| 507 | {
|
|---|
| 508 | TLeaf *L = T->GetLeaf(o->GetName());
|
|---|
| 509 |
|
|---|
| 510 | if (verbose>2)
|
|---|
| 511 | cout << '\n' << L->GetTitle() << " {" << L->GetTypeName() << "}";
|
|---|
| 512 |
|
|---|
| 513 | if (L->GetLenStatic()!=L->GetLen())
|
|---|
| 514 | {
|
|---|
| 515 | if (verbose>2)
|
|---|
| 516 | cout << " (-skipped-)";
|
|---|
| 517 | continue;
|
|---|
| 518 | }
|
|---|
| 519 |
|
|---|
| 520 |
|
|---|
| 521 | string name = o->GetName();
|
|---|
| 522 |
|
|---|
| 523 | bool found = false;
|
|---|
| 524 | for (auto b=_ignore.cbegin(); b!=_ignore.cend(); b++)
|
|---|
| 525 | {
|
|---|
| 526 | if (boost::regex_match(name, boost::regex(*b)))
|
|---|
| 527 | {
|
|---|
| 528 | found = true;
|
|---|
| 529 | if (verbose>2)
|
|---|
| 530 | cout << " (-ignored-)";
|
|---|
| 531 | break;
|
|---|
| 532 | }
|
|---|
| 533 | }
|
|---|
| 534 | if (found)
|
|---|
| 535 | continue;
|
|---|
| 536 |
|
|---|
| 537 | const string tn = L->GetTypeName();
|
|---|
| 538 |
|
|---|
| 539 | auto it = ConvRoot.find(tn);
|
|---|
| 540 | if (it==ConvRoot.end())
|
|---|
| 541 | {
|
|---|
| 542 | if (verbose>2)
|
|---|
| 543 | cout << " (-n/a-)";
|
|---|
| 544 | continue;
|
|---|
| 545 | }
|
|---|
| 546 |
|
|---|
| 547 | if (verbose==2)
|
|---|
| 548 | cout << '\n' << L->GetTitle() << " {" << L->GetTypeName() << "}";
|
|---|
| 549 |
|
|---|
| 550 | for (auto m=mymap.cbegin(); m!=mymap.cend(); m++)
|
|---|
| 551 | name = boost::regex_replace(name, boost::regex(m->first), m->second);
|
|---|
| 552 |
|
|---|
| 553 | if (verbose>1)
|
|---|
| 554 | cout << " (" << name << ")";
|
|---|
| 555 |
|
|---|
| 556 | string sqltype = it->second.second;
|
|---|
| 557 |
|
|---|
| 558 | for (auto m=sqltypes.cbegin(); m!=sqltypes.cend(); m++)
|
|---|
| 559 | if (m->first==name)
|
|---|
| 560 | sqltype = m->second;
|
|---|
| 561 |
|
|---|
| 562 | if (!vec.empty())
|
|---|
| 563 | query += ",\n";
|
|---|
| 564 |
|
|---|
| 565 | const size_t N = L->GetLenStatic();
|
|---|
| 566 | for (size_t i=0; i<N; i++)
|
|---|
| 567 | {
|
|---|
| 568 | query += " `"+name;
|
|---|
| 569 | if (N>1)
|
|---|
| 570 | query += "["+to_string(i)+"]";
|
|---|
| 571 | query += "` "+sqltype+" NOT NULL COMMENT '"+o->GetTitle()+"'";
|
|---|
| 572 | if (N>1 && i!=N-1)
|
|---|
| 573 | query += ",\n";
|
|---|
| 574 | }
|
|---|
| 575 |
|
|---|
| 576 | vec.emplace_back(o->GetTitle(), name, it->second.first, L->GetLenStatic());
|
|---|
| 577 | T->SetBranchAddress(o->GetTitle(), vec.back().ptr);
|
|---|
| 578 | }
|
|---|
| 579 |
|
|---|
| 580 | if (verbose>1)
|
|---|
| 581 | cout << "\n\n";
|
|---|
| 582 | if (verbose>0)
|
|---|
| 583 | {
|
|---|
| 584 | if (nvec>0)
|
|---|
| 585 | cout << nvec << " constant value column(s) configured." << endl;
|
|---|
| 586 | cout << vec.size()-nvec << " leaf/leaves setup for reading." << endl;
|
|---|
| 587 | }
|
|---|
| 588 |
|
|---|
| 589 | UInt_t datatype = 0;
|
|---|
| 590 | const bool has_datatype = T->SetBranchAddress("DataType.fVal", &datatype) >= 0;
|
|---|
| 591 |
|
|---|
| 592 | // Setiing up branch status (must be after all SetBranchAddress)
|
|---|
| 593 | T->SetBranchStatus("*", 0);
|
|---|
| 594 | for (auto c=vec.cbegin(); c!=vec.cend(); c++)
|
|---|
| 595 | if (c->type!=kConst)
|
|---|
| 596 | T->SetBranchStatus(c->branch.c_str(), 1);
|
|---|
| 597 |
|
|---|
| 598 | if (has_datatype)
|
|---|
| 599 | {
|
|---|
| 600 | T->SetBranchStatus("DataType.fVal", 1);
|
|---|
| 601 | if (verbose>0)
|
|---|
| 602 | cout << "Rows with DataType.fVal!=1 will be skipped." << endl;
|
|---|
| 603 | }
|
|---|
| 604 |
|
|---|
| 605 |
|
|---|
| 606 | // -------------------------------------------------------------------------
|
|---|
| 607 | // Checking for database connection
|
|---|
| 608 |
|
|---|
| 609 | if (verbose>0)
|
|---|
| 610 | {
|
|---|
| 611 | cout << "Connecting to database...\n";
|
|---|
| 612 | cout << "Client Version: " << mysqlpp::Connection().client_version() << endl;
|
|---|
| 613 | }
|
|---|
| 614 |
|
|---|
| 615 | Database connection(uri);
|
|---|
| 616 |
|
|---|
| 617 | if (verbose>0)
|
|---|
| 618 | cout << "Server Version: " << (connection.connected()?connection.server_version():"<n/a>") << endl;
|
|---|
| 619 |
|
|---|
| 620 | if (print_connection && connection.connected())
|
|---|
| 621 | {
|
|---|
| 622 | try
|
|---|
| 623 | {
|
|---|
| 624 | const auto &res1 = connection.query("SHOW STATUS LIKE 'Compression'").store();
|
|---|
| 625 | cout << "Compression of databse connection is " << string(res1[0][1]) << endl;
|
|---|
| 626 |
|
|---|
| 627 | const auto &res2 = connection.query("SHOW STATUS LIKE 'Ssl_cipher'").store();
|
|---|
| 628 | cout << "Connection to databases is " << (string(res2[0][1]).empty()?"UNENCRYPTED":"ENCRYPTED ("+string(res2[0][1])+")") << endl;
|
|---|
| 629 | }
|
|---|
| 630 | catch (const exception &e)
|
|---|
| 631 | {
|
|---|
| 632 | cerr << "\nSHOW STATUS LIKE COMPRESSION\n\n";
|
|---|
| 633 | cerr << "SQL query failed:\n" << e.what() << endl;
|
|---|
| 634 | return 3;
|
|---|
| 635 | }
|
|---|
| 636 | }
|
|---|
| 637 |
|
|---|
| 638 | // -------------------------------------------------------------------------
|
|---|
| 639 |
|
|---|
| 640 | if (verbose>0)
|
|---|
| 641 | cout << "\n--------------------------- Database Table -------------------------" << endl;
|
|---|
| 642 |
|
|---|
| 643 | if (!primary.empty())
|
|---|
| 644 | query += ",\n PRIMARY KEY USING BTREE (`"+boost::algorithm::join(primary, "`, `")+"`)";
|
|---|
| 645 |
|
|---|
| 646 | if (!vindex.empty() && (index || unique))
|
|---|
| 647 | query += ",\n "+string(unique?"UNIQUE ":"")+"INDEX USING BTREE (`"+boost::algorithm::join(vindex, "`, `")+"`)";
|
|---|
| 648 |
|
|---|
| 649 | query +=
|
|---|
| 650 | "\n)\n"
|
|---|
| 651 | "DEFAULT CHARSET=latin1 COLLATE=latin1_general_ci\n";
|
|---|
| 652 | if (!engine.empty())
|
|---|
| 653 | query += "ENGINE="+engine+"\n";
|
|---|
| 654 | if (!row_format.empty())
|
|---|
| 655 | query += "ROW_FORMAT="+row_format+"\n";
|
|---|
| 656 | query += "COMMENT='created by "+fs::path(conf.GetName()).filename().string()+"'\n";
|
|---|
| 657 |
|
|---|
| 658 | // FIXME: Can we omit the catching to be able to print the
|
|---|
| 659 | // query 'autmatically'?
|
|---|
| 660 | try
|
|---|
| 661 | {
|
|---|
| 662 | if (drop)
|
|---|
| 663 | {
|
|---|
| 664 | // => Simple result
|
|---|
| 665 | if (!dry_run)
|
|---|
| 666 | connection.query("DROP TABLE `"+table+"`").execute();
|
|---|
| 667 | if (verbose>0)
|
|---|
| 668 | {
|
|---|
| 669 | if (!dry_run)
|
|---|
| 670 | cout << "Table `" << table << "` dropped." << endl;
|
|---|
| 671 | else
|
|---|
| 672 | cout << "Dropping table `" << table << "`skipped!" << endl;
|
|---|
| 673 | }
|
|---|
| 674 |
|
|---|
| 675 | }
|
|---|
| 676 | }
|
|---|
| 677 | catch (const exception &e)
|
|---|
| 678 | {
|
|---|
| 679 | cerr << "DROP TABLE `" << table << "`\n\n";
|
|---|
| 680 | cerr << "SQL query failed:\n" << e.what() << '\n' << endl;
|
|---|
| 681 | return 4;
|
|---|
| 682 | }
|
|---|
| 683 |
|
|---|
| 684 | try
|
|---|
| 685 | {
|
|---|
| 686 | if (create && !dry_run)
|
|---|
| 687 | connection.query(query).execute();
|
|---|
| 688 | }
|
|---|
| 689 | catch (const exception &e)
|
|---|
| 690 | {
|
|---|
| 691 | cerr << query << "\n\n";
|
|---|
| 692 | cerr << "SQL query failed:\n" << e.what() << '\n' << endl;
|
|---|
| 693 | return 5;
|
|---|
| 694 | }
|
|---|
| 695 |
|
|---|
| 696 | if (print_create)
|
|---|
| 697 | cout << query << endl;
|
|---|
| 698 |
|
|---|
| 699 | if (create && verbose>0)
|
|---|
| 700 | {
|
|---|
| 701 | if (!dry_run)
|
|---|
| 702 | cout << "Table `" << table << "` created." << endl;
|
|---|
| 703 | else
|
|---|
| 704 | cout << "Creating table `" << table << "`skipped!" << endl;
|
|---|
| 705 | }
|
|---|
| 706 |
|
|---|
| 707 | try
|
|---|
| 708 | {
|
|---|
| 709 | if (conditional && !fixed.empty() && !drop)
|
|---|
| 710 | {
|
|---|
| 711 | const mysqlpp::StoreQueryResult res =
|
|---|
| 712 | connection.query("SELECT 1 FROM `"+table+"` WHERE 1"+where+" LIMIT 1").store();
|
|---|
| 713 |
|
|---|
| 714 | if (res.num_rows()>0)
|
|---|
| 715 | {
|
|---|
| 716 | if (verbose>0)
|
|---|
| 717 | {
|
|---|
| 718 | cout << "Conditional execution... detected existing rows!\n";
|
|---|
| 719 | cout << "Exit.\n" << endl;
|
|---|
| 720 | }
|
|---|
| 721 | return 0;
|
|---|
| 722 | }
|
|---|
| 723 | }
|
|---|
| 724 | }
|
|---|
| 725 | catch (const exception &e)
|
|---|
| 726 | {
|
|---|
| 727 | cerr << "SELECT 1 FROM `" << table << "` WHERE 1" << where << " LIMIT 1\n\n";
|
|---|
| 728 | cerr << "SQL query failed: " << e.what() << endl;
|
|---|
| 729 | return 6;
|
|---|
| 730 | }
|
|---|
| 731 |
|
|---|
| 732 | if (print_select)
|
|---|
| 733 | cout << "SELECT 1 FROM `" << table << "` WHERE 1" << where << " LIMIT 1" << endl;
|
|---|
| 734 |
|
|---|
| 735 | try
|
|---|
| 736 | {
|
|---|
| 737 | if (run_delete)
|
|---|
| 738 | {
|
|---|
| 739 | if (verbose>0)
|
|---|
| 740 | cout << "Deleting rows...";
|
|---|
| 741 |
|
|---|
| 742 | if (!fixed.empty() && !drop && !dry_run)
|
|---|
| 743 | {
|
|---|
| 744 | if (verbose>0)
|
|---|
| 745 | cout << endl;
|
|---|
| 746 |
|
|---|
| 747 | const mysqlpp::SimpleResult res =
|
|---|
| 748 | connection.query("DELETE FROM `"+table+"` WHERE 1"+where).execute();
|
|---|
| 749 |
|
|---|
| 750 | if (verbose>0)
|
|---|
| 751 | cout << res.rows() << " row(s) deleted.\n" << endl;
|
|---|
| 752 | }
|
|---|
| 753 | else
|
|---|
| 754 | if (verbose>0)
|
|---|
| 755 | cout << " skipped." << endl;
|
|---|
| 756 | }
|
|---|
| 757 | }
|
|---|
| 758 | catch (const exception &e)
|
|---|
| 759 | {
|
|---|
| 760 | cerr << "DELETE FROM `"+table+"` WHERE 1" << where << "\n\n";
|
|---|
| 761 | cerr << "SQL query failed: " << e.what() << endl;
|
|---|
| 762 | return 7;
|
|---|
| 763 | }
|
|---|
| 764 |
|
|---|
| 765 | if (print_delete)
|
|---|
| 766 | cout << "DELETE FROM `"+table+"` WHERE 1" << where << endl;
|
|---|
| 767 |
|
|---|
| 768 |
|
|---|
| 769 | // -------------------------------------------------------------------------
|
|---|
| 770 |
|
|---|
| 771 | if (verbose>0)
|
|---|
| 772 | cout << "\n---------------------------- Reading file --------------------------" << endl;
|
|---|
| 773 |
|
|---|
| 774 | //query = update ? "UPDATE" : "INSERT";
|
|---|
| 775 | query = "INSERT ";
|
|---|
| 776 | if (ignore_errors)
|
|---|
| 777 | query += "IGNORE ";
|
|---|
| 778 | query += "`"+table+"`\n"
|
|---|
| 779 | "(\n";
|
|---|
| 780 |
|
|---|
| 781 | for (auto c=vec.cbegin(); c!=vec.cend(); c++)
|
|---|
| 782 | {
|
|---|
| 783 | if (c!=vec.cbegin())
|
|---|
| 784 | query += ",\n";
|
|---|
| 785 |
|
|---|
| 786 | const size_t N = c->num;
|
|---|
| 787 | for (size_t i=0; i<N; i++)
|
|---|
| 788 | {
|
|---|
| 789 | if (N==1)
|
|---|
| 790 | query += " `"+c->column+"`";
|
|---|
| 791 | else
|
|---|
| 792 | query += " `"+c->column+"["+to_string(i)+"]`";
|
|---|
| 793 |
|
|---|
| 794 | if (N>1 && i!=N-1)
|
|---|
| 795 | query += ",\n";
|
|---|
| 796 | }
|
|---|
| 797 | }
|
|---|
| 798 |
|
|---|
| 799 | query +=
|
|---|
| 800 | "\n)\n"
|
|---|
| 801 | "VALUES\n";
|
|---|
| 802 |
|
|---|
| 803 | size_t count = 0;
|
|---|
| 804 |
|
|---|
| 805 | const size_t num = max>0 && (max-first)<T->GetEntriesFast() ? (max-first) : T->GetEntriesFast();
|
|---|
| 806 | for (size_t j=first; j<num; j++)
|
|---|
| 807 | {
|
|---|
| 808 | T->GetEntry(j);
|
|---|
| 809 | if (has_datatype && datatype!=1)
|
|---|
| 810 | continue;
|
|---|
| 811 |
|
|---|
| 812 | if (count>0)
|
|---|
| 813 | query += ",\n";
|
|---|
| 814 |
|
|---|
| 815 | query += "(\n";
|
|---|
| 816 |
|
|---|
| 817 | for (auto c=vec.cbegin(); c!=vec.cend(); c++)
|
|---|
| 818 | {
|
|---|
| 819 | if (c!=vec.cbegin())
|
|---|
| 820 | query += ",\n";
|
|---|
| 821 |
|
|---|
| 822 | const size_t N = c->num;
|
|---|
| 823 | for (size_t i=0; i<N; i++)
|
|---|
| 824 | {
|
|---|
| 825 | query += " "+c->fmt(i);
|
|---|
| 826 |
|
|---|
| 827 | if (print_insert && i==0)
|
|---|
| 828 | query += " /* "+c->column+" -> "+c->branch+" */";
|
|---|
| 829 |
|
|---|
| 830 | if (N>1 && i!=N-1)
|
|---|
| 831 | query += ",\n";
|
|---|
| 832 | }
|
|---|
| 833 | }
|
|---|
| 834 | query += "\n)";
|
|---|
| 835 |
|
|---|
| 836 | count ++;
|
|---|
| 837 | }
|
|---|
| 838 |
|
|---|
| 839 | if (!duplicate.empty())
|
|---|
| 840 | query += "\nON DUPLICATE KEY UPDATE\n " + boost::join(duplicate, ",\n ");
|
|---|
| 841 |
|
|---|
| 842 | if (verbose>0)
|
|---|
| 843 | cout << count << " out of " << num << " row(s) read from file [N=" << first << ".." << num-1 << "]." << endl;
|
|---|
| 844 |
|
|---|
| 845 | if (count==0)
|
|---|
| 846 | {
|
|---|
| 847 | if (verbose>0)
|
|---|
| 848 | {
|
|---|
| 849 | cout << "Total execution time: " << Time().UnixTime()-start.UnixTime() << "s.\n";
|
|---|
| 850 | cout << "Success.\n" << endl;
|
|---|
| 851 | }
|
|---|
| 852 | return 0;
|
|---|
| 853 | }
|
|---|
| 854 |
|
|---|
| 855 | // -------------------------------------------------------------------------
|
|---|
| 856 |
|
|---|
| 857 | if (verbose>0)
|
|---|
| 858 | {
|
|---|
| 859 | cout << "\n--------------------------- Inserting data -------------------------" << endl;
|
|---|
| 860 | cout << "Sending INSERT query (" << query.length() << " bytes)" << endl;
|
|---|
| 861 | }
|
|---|
| 862 |
|
|---|
| 863 | try
|
|---|
| 864 | {
|
|---|
| 865 | if (!noinsert && !dry_run)
|
|---|
| 866 | {
|
|---|
| 867 | auto q = connection.query(query);
|
|---|
| 868 | q.execute();
|
|---|
| 869 | cout << q.info() << '\n' << endl;
|
|---|
| 870 | }
|
|---|
| 871 | else
|
|---|
| 872 | cout << "Insert query skipped!" << endl;
|
|---|
| 873 |
|
|---|
| 874 | if (print_insert)
|
|---|
| 875 | cout << query << endl;
|
|---|
| 876 | }
|
|---|
| 877 | catch (const exception &e)
|
|---|
| 878 | {
|
|---|
| 879 | if (verbose>1 || query.length()<80*25)
|
|---|
| 880 | cerr << query << "\n\n";
|
|---|
| 881 | cerr << "SQL query failed (" << query.length() << " bytes):\n" << e.what() << '\n' << endl;
|
|---|
| 882 | return 8;
|
|---|
| 883 | }
|
|---|
| 884 |
|
|---|
| 885 | if (verbose>0)
|
|---|
| 886 | {
|
|---|
| 887 | const auto sec = Time().UnixTime()-start.UnixTime();
|
|---|
| 888 | cout << "Total execution time: " << sec << "s ";
|
|---|
| 889 | cout << "(" << Tools::Fractional(sec/count) << "s/row)\n";
|
|---|
| 890 |
|
|---|
| 891 | try
|
|---|
| 892 | {
|
|---|
| 893 | const auto resw =
|
|---|
| 894 | connection.query("SHOW WARNINGS").store();
|
|---|
| 895 |
|
|---|
| 896 | for (size_t i=0; i<resw.num_rows(); i++)
|
|---|
| 897 | {
|
|---|
| 898 | const mysqlpp::Row &roww = resw[i];
|
|---|
| 899 |
|
|---|
| 900 | cout << roww["Level"] << '[' << roww["Code"] << "]: ";
|
|---|
| 901 | cout << roww["Message"] << '\n';
|
|---|
| 902 | }
|
|---|
| 903 | cout << endl;
|
|---|
| 904 |
|
|---|
| 905 | }
|
|---|
| 906 | catch (const exception &e)
|
|---|
| 907 | {
|
|---|
| 908 | cerr << "\nSHOW WARNINGS\n\n";
|
|---|
| 909 | cerr << "SQL query failed:\n" << e.what() << '\n' <<endl;
|
|---|
| 910 | return 9;
|
|---|
| 911 | }
|
|---|
| 912 | }
|
|---|
| 913 |
|
|---|
| 914 | if (print_connection)
|
|---|
| 915 | {
|
|---|
| 916 | try
|
|---|
| 917 | {
|
|---|
| 918 | // Exchange _send and _received as it is the view of the server
|
|---|
| 919 | const auto &res1 = connection.query("SHOW STATUS LIKE 'Bytes_%'").store();
|
|---|
| 920 | cout << left << setw(16) << res1[1]["Variable_name"] << ' ' << Tools::Scientific(res1[0]["Value"]) << endl;
|
|---|
| 921 | cout << left << setw(16) << res1[0]["Variable_name"] << ' ' << Tools::Scientific(res1[1]["Value"]) << endl;
|
|---|
| 922 | cout << endl;
|
|---|
| 923 | }
|
|---|
| 924 | catch (const exception &e)
|
|---|
| 925 | {
|
|---|
| 926 | cerr << "\nSHOW STATUS LIKE 'Bytes_%'\n\n";
|
|---|
| 927 | cerr << "SQL query failed:\n" << e.what() << endl;
|
|---|
| 928 | return 10;
|
|---|
| 929 | }
|
|---|
| 930 | }
|
|---|
| 931 |
|
|---|
| 932 | cout << "Success!\n" << endl;
|
|---|
| 933 | return 0;
|
|---|
| 934 | }
|
|---|