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source: trunk/FACT++/src/rootifysql.cc@ 19846

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Last change on this file since 19846 was 19802, checked in by tbretz, 5 years ago
Moved the common Splitting algorithm to a common class 'Splitting' (added) and added the possibility to rename columns (csv2root)
File size: 35.7 KB

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1	#include "Database.h"
2
3	#include <boost/regex.hpp>
4	#include <boost/tokenizer.hpp>
5	#include <boost/algorithm/string.hpp>
6	#include <boost/algorithm/string/join.hpp>
7
8	#include "tools.h"
9	#include "Time.h"
10	#include "Splitting.h"
11
12	#include <TROOT.h>
13	#include <TSystem.h>
14	#include <TFile.h>
15	#include <TTree.h>
16
17	using namespace std;
18
19	// ------------------------------------------------------------------------
20
21	void SetupConfiguration(Configuration &conf)
22	{
23	po::options_description control("Database options");
24	control.add_options()
25	("uri,u", var<string>()->required(), "Database link as in\n\tuser:password@server[:port]/database[?compress=0\|1].")
26	("query,q", var<string>(""), "MySQL query (overwrites --file)")
27	("file", var<string>("rootify.sql"), "An ASCII file with the MySQL query (overwrites --query)")
28	("ignore-null,i", po_switch(), "Do not skip rows containing any NULL field")
29	("display,d", po_switch(), "Displays contents on the screen (most usefull in combination with mysql statements as SHOW or EXPLAIN)")
30	("explain", po_switch(), "Requests an EXPLAIN from the server (shows the server optimized query)\nsee also https://dev.mysql.com/doc/refman/explain-output.html")
31	("profiling", po_switch(), "Turn on profiling and print profile")
32	("var.*", var<string>(), "Predefined SQL user variables (@VAR)")
33	("env.*", vars<string>(), "Predefined environment for substitutions in the query ($ENV)")
34	("list.*", var<string>(), "Predefined environment for substitutions in the query ($ENV). The list is read from the given file (one list entry per line)")
35	("print-connection", po_switch(), "Print database connection information")
36	("verbose,v", var<uint16_t>(1), "Verbosity (0: quiet, 1: default, 2: more, 3, ...)")
37	;
38
39	po::options_description ascii("ASCII output");
40	ascii.add_options()
41	("write,w", var<string>(""), "Write output to an ascii file")
42	("delimiter", var<string>(), "The delimiter used if contents are displayed with --display (default=\\t)")
43	("copy-shabang", po_switch(), "Copy the sha-bang line if exists to the output file")
44	("copy-header", po_switch(), "Copy the header (all line starting with '#' up to the first non-comment line to the output file")
45	("copy-query", po_switch(), "Copy the query to the ascii output file")
46	("copy-comments", po_switch(), "Copy all lines starting with '#' to the output file which are not part of header")
47	("copy-all", po_switch(), "An alias for --copy-header --copy-query --copy-comments")
48	;
49
50	po::options_description root("Root file options");
51	root.add_options()
52	("out,o", var<string>("rootify.root"), "Output root file name")
53	("force,f", po_switch(), "Force overwriting an existing root file ('RECREATE')")
54	("update", po_switch(), "Update an existing root file with the new tree ('UPDATE')")
55	("compression,c", var<uint16_t>(1), "zlib compression level for the root file")
56	("tree,t", var<string>("Result"), "Name of the root tree")
57	("ignore", vars<string>(), "Ignore the given columns")
58	("null,n", po_switch(), "Redirect the root output file to /dev/null (mainly for debugging purposes, e.g. performance studies)")
59	("no-fill", po_switch(), "Do not fill events into the root file (mainly for debugging purposes, e.g. performance studies)")
60	;
61
62	po::positional_options_description p;
63	p.add("file", 1); // The 1st positional options (n=1)
64	p.add("out", 1); // The 2nd positional options (n=1)
65
66	conf.AddOptions(control);
67	conf.AddOptions(ascii);
68	conf.AddOptions(root);
69	conf.AddOptions(Tools::Splitting::options());
70	conf.SetArgumentPositions(p);
71	}
72
73	void PrintUsage()
74	{
75	cout <<
76	"rootifysql - Converts the result of a mysql query into a root file\n"
77	"\n"
78	"For convenience, this documentation uses the extended version of the options, "
79	"refer to the output below to get the abbreviations.\n"
80	"\n"
81	"Writes the result of a mysql query into a root file. For each column, a branch is "
82	"created of type double with the field name as name. This is usually the column name "
83	"if not specified otherwise by the AS mysql directive.\n"
84	"\n"
85	"Columns with CHAR or VARCHAR as field type are ignored. DATETIME, DATE and TIME "
86	"columns are converted to unix time (time_t). Rows containing any file which is "
87	"NULL are skipped if not suppressed by the --ignore-null option. Ideally, the query "
88	"is compiled in a way that no NULL field is returned. With the --display option the "
89	"result of the request is printed on the screen (NULL skipping still in action). "
90	"This can be useful to create an ascii file or to show results as 'SHOW DATABASES' "
91	"or 'EXPLAIN table'. To redirect the contents into an ascii file, the option -v0 "
92	"is useful. To suppress writing to an output file --null can be used.\n"
93	"\n"
94	"The default is to read the query from a file called rootify.sql. Except if a different "
95	"filename is specified by the --file option or a query is given with --query.\n"
96	"\n"
97	"As a trick, the rootify.sql file can be made excutable (chmod u+x rootify.sql). "
98	"If the first line contains '#!rootifysql', the script can be executed directly.\n"
99	"\n"
100	"Columns whose name start with @ are skipped. If you want them in your output file "
101	"give them a name using AS, e.g. 'SELECT @A:=5 AS A'.\n"
102	"\n"
103	"You can use variables in your sql query like @MyVar and define them on the "
104	"command line. In this example with --var.MyVar=5\n"
105	"\n"
106	"You can use environment definitions for substitutions in your SQL query. "
107	"For example --env.TEST=5 would replace $TEST or ${TEST} in your query by 5."
108	"If you specify one environment variable more than once, a list is created. "
109	"For example --env.TEST=1 --env.TEST=2 --env.TEST=3 would substitute "
110	"$TEST or ${TEST} by '1, 2, 3'. This is useful for the SQL `IN` keyword. "
111	"You can also read the values for an enviroment substitution from a file "
112	"(one element per line), e.g. --env.TEST=file.txt. Empty lines and lines "
113	"starting with a # are skipped.\n"
114	"\n"
115	"Comments in the query-file can be placed according to the SQL standard inline "
116	"/comment/ or introduced with # (shell script style) or -- (SQL style).\n"
117	"\n"
118	<< Tools::Splitting::usage() <<
119	"\n"
120	"In case of success, 0 is returned, a value>0 otherwise.\n"
121	"\n"
122	"Usage: rootifysql [rootify.sql [rootify.root]] [-u URI] [-q query\|-f file] [-i] [-o out] [-f] [-cN] [-t tree] [-vN]\n"
123	"\n"
124	;
125	cout << endl;
126	}
127
128	struct ExplainParser
129	{
130	string sql;
131
132	vector<string> vec;
133
134	string substitute(string _str, const boost::regex &expr)
135	{
136	boost::smatch match;
137	while (boost::regex_search(_str, match, expr, boost::regex_constants::format_first_only))
138	{
139	const auto &len = match.length();
140	const auto &pos = match.position();
141	const auto &str = match.str();
142
143	const auto it = find(vec.cbegin(), vec.cend(), str);
144	const size_t id = it==vec.cend() ? vec.size() : it-vec.cbegin();
145
146	_str.replace(pos, len, "{"+to_string(id)+"}");
147
148	if (it==vec.cend())
149	vec.push_back(str);//.substr(1, str.size()-2));
150	}
151
152	return _str;
153	}
154
155	string substitute(const string &str, const string &expr)
156	{
157	return substitute(str, boost::regex(expr));
158	}
159
160	vector<string> queries;
161
162	string resub(string str)
163	{
164	// search for "KEYWORD expression"
165	boost::regex reg("\\{[0-9]+\\}");
166
167	boost::smatch match;
168	while (boost::regex_search(str, match, reg, boost::regex_constants::format_first_only))
169	{
170	const auto &len = match.length();
171	const auto &pos = match.position();
172	const auto &arg = match.str(); // Argument
173
174	const auto idx = atoi(arg.c_str()+1);
175
176	str.replace(pos, len, resub(vec[idx]));
177	}
178
179	return str;
180	}
181
182	void expression(string expr, size_t indent=0)
183	{
184	if (expr[0]=='{')
185	{
186	const auto idx = atoi(expr.c_str()+1);
187
188	// This is a subquery
189	if (vec[idx].substr(0,3)=="(/*")
190	{
191	cout << setw(indent) << ' ' << "(\n";
192	find_tokens(vec[idx], indent+4);
193	cout << setw(indent) << ' ' << ") ";
194	}
195	else
196	// This is just something to substitute back
197	if (vec[idx].substr(0,2)=="({")
198	{
199	cout << setw(indent) << ' ' << "(" << resub(vec[idx]) << ") ";
200	}
201	else
202	{
203	if (indent>0)
204	cout << setw(indent) << ' ';
205	cout << resub(vec[idx]);
206	}
207	}
208	else
209	{
210	if (indent>0)
211	cout << setw(indent) << ' ';
212	cout << resub(expr);
213	}
214	}
215
216	void find_tokens(string str, size_t indent=0)
217	{
218	// ( COMMENT )?( TOKEN )?(( {NNN} \| NNN )( AS\|ON ( {NNN}) ))?(,)?)
219	//regex reg("(\\/\\\\ select\\#[0-9]+\\ \\\\/\\ *)?([a-zA-Z ]+)?((\\{[0-9]+\\}\|[0-9]+)(\\ ?([Aa][Ss]\|[Oo][Nn])\\ ?(\\{[0-9]+\\}))?(,)?)");
220
221	const string _com = "\\/\\\\ select\\#[0-9]+\\ \\\\/\\ *";
222
223	const string _tok = "[a-zA-Z_ ]+";
224
225	const string _nnn = "\\{[0-9]+\\}\|[0-9]+";
226
227	const string _as = "\\ ?([Aa][Ss])\\ ?";
228
229	// ( _nnn ) ( _as ( _nnn ))?(,)? // can also match noting in between two {NNN}
230	const string _exp = "("+_nnn+")" + "("+_as+"("+_nnn+"))?(,)?";
231
232	// Matche: ( _com )? ( ( _tok )? ( _exp ) \| ( _tok ) )
233	boost::regex reg("("+_com+")?" + "(" + "("+_tok+")?"+"("+_exp+")" + "\|" + "("+_tok+")" + ")");
234
235	boost::smatch match;
236	while (boost::regex_search(str, match, reg, boost::regex_constants::format_first_only))
237	{
238
239	const auto &com = match.str(1); // comment
240	const auto &tok1 = Tools::Trim(match.str(3)); // token with expression
241	const auto &arg1 = match.str(5); // argument 1
242	const auto &as = match.str(7); // as
243	const auto &arg2 = match.str(8); // argument 2
244	const auto &comma = match.str(9); // comma
245	const auto &tok2 = Tools::Trim(match.str(10)); // token without expression
246
247	if (!com.empty())
248	cout << setw(indent) << ' ' << "\033[34m" << com << "\033[0m" << '\n';
249
250	if (!tok1.empty())
251	cout << setw(indent) << ' ' << "\033[32m" << tok1 << "\033[0m" << '\n';
252	if (!tok2.empty())
253	cout << setw(indent) << ' ' << "\033[32m" << tok2 << "\033[0m" << '\n';
254
255	if (!arg1.empty())
256	{
257	expression(arg1, indent+4);
258
259	if (!as.empty())
260	cout << " \033[33m" << as << "\033[0m ";
261
262	if (!arg2.empty())
263	expression(arg2);
264
265	if (!comma.empty())
266	cout << ',';
267
268	cout << '\n';
269	}
270
271	str = str.substr(match.position()+match.length());
272	}
273	}
274
275
276	ExplainParser(const string &_sql) : sql(_sql)
277	{
278	// substitute all strings
279	sql = substitute(sql, "'[^']*'");
280
281	// substitute all escaped sequences (`something`.`something-else`)
282	sql = substitute(sql, "`[^`]`(\\.`[^`]`)*");
283
284	// substitute all paranthesis
285	sql = substitute(sql, "[a-zA-Z0-9_]\\([^\\(\\)]\\)");
286
287	//cout << sql << "\n\n";
288	find_tokens(sql);
289	cout << endl;
290	}
291	};
292
293	// Remove queries...
294	void format(string sql)
295	{
296	ExplainParser p(sql);
297
298	/*
299
300	SELECT
301	[ALL \| DISTINCT \| DISTINCTROW ]
302	[HIGH_PRIORITY]
303	[STRAIGHT_JOIN]
304	[SQL_SMALL_RESULT] [SQL_BIG_RESULT] [SQL_BUFFER_RESULT]
305	[SQL_CACHE \| SQL_NO_CACHE] [SQL_CALC_FOUND_ROWS]
306	select_expr [, select_expr ...]
307	[FROM table_references
308	[PARTITION partition_list]
309	[WHERE where_condition]
310	[GROUP BY {col_name \| expr \| position}, ... [WITH ROLLUP]]
311	[HAVING where_condition]
312	[WINDOW window_name AS (window_spec)
313	[, window_name AS (window_spec)] ...]
314	[ORDER BY {col_name \| expr \| position}
315	[ASC \| DESC], ... [WITH ROLLUP]]
316	[LIMIT {[offset,] row_count \| row_count OFFSET offset}]
317	[INTO OUTFILE 'file_name'
318	[CHARACTER SET charset_name]
319	export_options
320	\| INTO DUMPFILE 'file_name'
321	\| INTO var_name [, var_name]]
322	[FOR {UPDATE \| SHARE} [OF tbl_name [, tbl_name] ...] [NOWAIT \| SKIP LOCKED]
323	\| LOCK IN SHARE MODE]]
324	*/
325
326	/*
327	table_references:
328	escaped_table_reference [, escaped_table_reference] ...
329
330	escaped_table_reference:
331	table_reference
332	\| { OJ table_reference }
333
334	table_reference:
335	table_factor
336	\| join_table
337
338	table_factor:
339	tbl_name [PARTITION (partition_names)]
340	[[AS] alias] [index_hint_list]
341	\| table_subquery [AS] alias [(col_list)]
342	\| ( table_references )
343
344	join_table:
345	table_reference [INNER \| CROSS] JOIN table_factor [join_condition]
346	\| table_reference STRAIGHT_JOIN table_factor
347	\| table_reference STRAIGHT_JOIN table_factor ON conditional_expr
348	\| table_reference {LEFT\|RIGHT} [OUTER] JOIN table_reference join_condition
349	\| table_reference NATURAL [INNER \| {LEFT\|RIGHT} [OUTER]] JOIN table_factor
350
351	join_condition:
352	ON conditional_expr
353	\| USING (column_list)
354
355	index_hint_list:
356	index_hint [, index_hint] ...
357
358	index_hint:
359	USE {INDEX\|KEY}
360	[FOR {JOIN\|ORDER BY\|GROUP BY}] ([index_list])
361	\| IGNORE {INDEX\|KEY}
362	[FOR {JOIN\|ORDER BY\|GROUP BY}] (index_list)
363	\| FORCE {INDEX\|KEY}
364	[FOR {JOIN\|ORDER BY\|GROUP BY}] (index_list)
365
366	index_list:
367	index_name [, index_name] ...
368	*/
369
370	}
371
372	int finish(Database &connection, const uint16_t &verbose, const bool &profiling, const bool &print_connection)
373	{
374	if (verbose>0)
375	{
376	try
377	{
378	const auto resw =
379	connection.query("SHOW WARNINGS").store();
380
381	if (resw.num_rows()>0)
382	cout << "\n" << resw.num_rows() << " Warning(s) issued:\n\n";
383
384	for (size_t i=0; i<resw.num_rows(); i++)
385	{
386	const mysqlpp::Row &roww = resw[i];
387
388	cout << roww["Level"] << '[' << roww["Code"] << "]: ";
389	cout << roww["Message"] << '\n';
390	}
391	cout << endl;
392
393	}
394	catch (const exception &e)
395	{
396	cerr << "\nSHOW WARNINGS\n\n";
397	cerr << "SQL query failed:\n" << e.what() << endl;
398	return 1;
399	}
400	}
401
402	if (profiling)
403	{
404	try
405	{
406	const auto N =
407	connection.query("SHOW PROFILES").store().num_rows();
408
409	const auto resp =
410	connection.query("SHOW PROFILE ALL FOR QUERY "+to_string(verbose?N-1:N)).store();
411
412	cout << '\n';
413	cout << left;
414	cout << setw(26) << "Status" << ' ';
415	cout << right;
416	cout << setw(11) << "Duration" << ' ';
417	cout << setw(11) << "CPU User" << ' ';
418	cout << setw(11) << "CPU System" << '\n';
419	cout << "--------------------------------------------------------------\n";
420	for (size_t i=0; i<resp.num_rows(); i++)
421	{
422	const mysqlpp::Row &rowp = resp[i];
423
424	cout << left;
425	cout << setw(26) << rowp["Status"] << ' ';
426	cout << right;
427	cout << setw(11) << rowp["Duration"] << ' ';
428	cout << setw(11) << rowp["CPU_user"] << ' ';
429	cout << setw(11) << rowp["CPU_system"] << '\n';
430	}
431	cout << "--------------------------------------------------------------\n";
432	cout << endl;
433	}
434	catch (const exception &e)
435	{
436	cerr << "\nSHOW PROFILE ALL\n\n";
437	cerr << "SQL query failed:\n" << e.what() << '\n' <<endl;
438	return 2;
439	}
440	}
441
442	if (print_connection)
443	{
444	try
445	{
446	// Exchange _send and _received as it is the view of the server
447	const auto &res1 = connection.query("SHOW STATUS LIKE 'Bytes_%'").store();
448	cout << left << setw(16) << res1[1]["Variable_name"] << ' ' << Tools::Scientific(res1[0]["Value"]) << endl;
449	cout << left << setw(16) << res1[0]["Variable_name"] << ' ' << Tools::Scientific(res1[1]["Value"]) << endl;
450	cout << endl;
451	}
452	catch (const exception &e)
453	{
454	cerr << "\nSHOW STATUS LIKE 'Bytes_%'\n\n";
455	cerr << "SQL query failed:\n" << e.what() << endl;
456	return 3;
457	}
458	}
459
460	if (verbose>0)
461	cout << "Success!\n" << endl;
462	return 0;
463
464	}
465
466	int main(int argc, const char* argv[])
467	{
468	Time start;
469
470	gROOT->SetBatch();
471
472	Configuration conf(argv[0]);
473	conf.SetPrintUsage(PrintUsage);
474	SetupConfiguration(conf);
475
476	if (!conf.DoParse(argc, argv))
477	return 127;
478
479	// ----------------------------- Evaluate options --------------------------
480	const string uri = conf.Get<string>("uri");
481	const string out = conf.Get<string>("out");
482	const string file = conf.Get<string>("file");
483	const string tree = conf.Get<string>("tree");
484	const bool force = conf.Get<bool>("force");
485	const bool ignorenull = conf.Get<bool>("ignore-null");
486	const bool update = conf.Get<bool>("update");
487	const bool display = conf.Get<bool>("display");
488	const string write = conf.Get<string>("write");
489	const bool noout = conf.Get<bool>("null");
490	const bool nofill = conf.Get<bool>("no-fill");
491	const bool explain = conf.Get<bool>("explain");
492	const bool profiling = conf.Get<bool>("profiling");
493	const uint16_t verbose = conf.Get<uint16_t>("verbose");
494	const uint16_t compression = conf.Get<uint16_t>("compression");
495	const string delimiter = conf.Has("delimiter") ? conf.Get<string>("delimiter") : "\t";
496
497	const bool copy_all = conf.Get<bool>("copy-all");
498	const bool copy_shabang = conf.Get<bool>("copy-shabang");
499	const bool copy_header = copy_all \|\| conf.Get<bool>("copy-header");
500	const bool copy_query = copy_all \|\| conf.Get<bool>("copy-query");
501	const bool copy_comments = copy_all \|\| conf.Get<bool>("copy-comments");
502
503	const vector<string> _ignore = conf.Vec<string>("ignore");
504	const bool print_connection = conf.Get<bool>("print-connection");
505	//const vector<Map> mymap = conf.Vec<Map>("map");
506
507	// ----------------------- Setup splitting ---------------------------------
508
509	const auto vars = conf.GetWildcardOptions("var.*");
510
511	vector<string> variables;
512	for (auto var=vars.cbegin(); var!=vars.cend(); var++)
513	variables.emplace_back('@'+var->substr(4)+":="+Tools::Trim(conf.Get<string>(*var)));
514
515	// -------------------------------------------------------------------------
516
517	/const/ Tools::Splitting split(conf);
518
519	if (verbose>0)
520	{
521	cout << "\n------------------------ Rootify SQL -------------------------" << endl;
522	cout << "Start Time: " << Time::sql << Time(Time::local) << endl;
523	}
524
525	string query = conf.Get<string>("query");
526	if (query.empty())
527	{
528	if (verbose>0)
529	cout << "Reading query from file '" << file << "'." << endl;
530
531	ifstream fin(file);
532	if (!fin)
533	{
534	cerr << "Could not open query in '" << file << "': " << strerror(errno) << endl;
535	return 4;
536	}
537
538	getline(fin, query, (char)fin.eof());
539	}
540
541	if (query.empty())
542	{
543	cerr << "No query specified." << endl;
544	return 5;
545	}
546
547	// -------------------------------------------------------------------------
548
549	map<string, vector<string>> envs;
550
551	const auto &envs1 = conf.GetWildcardOptions("env.*");
552	for (auto env=envs1.cbegin(); env!=envs1.cend(); env++)
553	envs[env->substr(4)] = conf.Vec<string>(*env);
554
555	const auto &envs2 = conf.GetWildcardOptions("list.*");
556	for (auto env=envs2.cbegin(); env!=envs2.cend(); env++)
557	{
558	const string fname = conf.Get<string>(*env);
559	const string &ident = env->substr(5);
560
561	ifstream fin(fname);
562	if (!fin)
563	{
564	cerr << "Could not open environment in '" << fname << "' for ${" << ident << "}: " << strerror(errno) << endl;
565	return 6;
566	}
567	for (string line; getline(fin, line); )
568	{
569	const auto &l = Tools::Trim(line);
570	if (!l.empty() && l[0]!='#')
571	envs[ident].push_back(line);
572	}
573
574	if (verbose>0)
575	cout << "Found " << envs[ident].size() << " list element(s) for ${" << ident << "}" << endl;
576	}
577
578	for (auto env=envs.cbegin(); env!=envs.cend(); env++)
579	{
580	boost::regex rexpr("\\$(\\{"+env->first+"\\}\|"+env->first+"\\b)");
581	query = boost::regex_replace(query, rexpr, boost::join(env->second, ", "));
582	}
583
584	// -------------------------- Check for file permssion ---------------------
585	// Strictly speaking, checking for write permission and existance is not necessary,
586	// but it is convenient that the user does not find out that it failed after
587	// waiting long for the query result
588	//
589
590	// I am using root here instead of boost to be
591	// consistent with the access pattern by TFile
592	TString path(noout?"/dev/null":out.c_str());
593	gSystem->ExpandPathName(path);
594
595	if (!noout)
596	{
597	FileStat_t stat;
598	const Int_t exist = !gSystem->GetPathInfo(path, stat);
599	const Bool_t _write = !gSystem->AccessPathName(path, kWritePermission) && R_ISREG(stat.fMode);
600
601	if ((update && !exist) \|\| (update && exist && !_write) \|\| (force && exist && !_write))
602	{
603	cerr << "File '" << path << "' is not writable." << endl;
604	return 7;
605	}
606
607	if (!update && !force && exist)
608	{
609	cerr << "File '" << path << "' already exists." << endl;
610	return 8;
611	}
612	}
613
614	Time start2;
615
616	// --------------------------- Connect to database -------------------------------------------------
617
618	if (*query.rbegin()!='\n')
619	query += '\n';
620
621	if (verbose>0)
622	{
623	cout << "Connecting to database...\n";
624	cout << "Client Version: " << mysqlpp::Connection().client_version() << endl;
625	}
626
627	Database connection(uri); // Keep alive while fetching rows
628
629	if (verbose>0)
630	cout << "Server Version: " << connection.server_version() << endl;
631
632	if (print_connection)
633	{
634	try
635	{
636	const auto &res1 = connection.query("SHOW STATUS LIKE 'Compression'").store();
637	cout << "Compression of database connection is " << string(res1[0][1]) << endl;
638
639	const auto &res2 = connection.query("SHOW STATUS LIKE 'Ssl_cipher'").store();
640	cout << "Connection to databases is " << (string(res2[0][1]).empty()?"UNENCRYPTED":"ENCRYPTED ("+string(res2[0][1])+")") << endl;
641	}
642	catch (const exception &e)
643	{
644	cerr << "\nSHOW STATUS LIKE 'Compression'\n\n";
645	cerr << "SQL query failed:\n" << e.what() << endl;
646	return 9;
647	}
648	}
649
650	try
651	{
652	if (profiling)
653	connection.query("SET PROFILING=1").execute();
654	}
655	catch (const exception &e)
656	{
657	cerr << "\nSET profiling=1\n\n";
658	cerr << "SQL query failed:\n" << e.what() << endl;
659	return 10;
660	}
661
662	// -------------------------- Set user defined variables -------------------
663	if (variables.size()>0)
664	{
665	if (verbose>0)
666	cout << "Setting user defined variables..." << endl;
667
668	const string varset =
669	"SET\n "+boost::algorithm::join(variables, ",\n ");
670
671	try
672	{
673	connection.query(varset).execute();
674	}
675	catch (const exception &e)
676	{
677	cerr << '\n' << varset << "\n\n";
678	cerr << "SQL query failed:\n" << e.what() << endl;
679	return 11;
680	}
681
682	if (verbose>2)
683	cout << '\n' << varset << '\n' << endl;
684	}
685
686	// ------------------------- Explain query if requested --------------------
687
688	if (explain)
689	{
690	try
691	{
692	const auto res0 =
693	connection.query("EXPLAIN FORMAT=JSON "+query).store();
694
695	cout << res0[0][0] << endl;
696	cout << endl;
697
698	const mysqlpp::StoreQueryResult res1 =
699	connection.query("EXPLAIN "+query).store();
700
701	for (size_t i=0; i<res1.num_rows(); i++)
702	{
703	const mysqlpp::Row &row = res1[i];
704
705	cout << "\nid : " << row["id"];
706	cout << "\nselect type : " << row["select_type"];
707
708	if (!row["table"].is_null())
709	cout << "\ntable : " << row["table"];
710
711	if (!row["partitions"].is_null())
712	cout << "\npartitions : " << row["partitions"];
713
714	if (!row["key"].is_null())
715	cout << "\nselected key : " << row["key"] << " [len=" << row["key_len"] << "] out of (" << row["possible_keys"] << ")";
716
717	if (!row["type"].is_null())
718	cout << "\njoin type : " << row["type"];
719
720	//if (!row["possible_keys"].is_null())
721	// cout << "\npossible_keys: " << row["possible_keys"];
722
723	//if (!row["key_len"].is_null())
724	// cout << "\nkey_len : " << row["key_len"];
725
726	if (!row["ref"].is_null())
727	cout << "\nref : (" << row["ref"] << ") compared to the index";
728
729	if (!row["rows"].is_null())
730	cout << "\nrows : " << row["rows"];
731
732	if (!row["filtered"].is_null())
733	cout << "\nfiltered : " << row["filtered"];
734
735	if (!row["extra"].is_null())
736	cout << "\nExtra : " << row["extra"];
737
738	cout << endl;
739	}
740
741	cout << endl;
742
743	const mysqlpp::StoreQueryResult res2 =
744	connection.query("SHOW WARNINGS").store();
745
746	for (size_t i=0; i<res2.num_rows(); i++)
747	{
748	const mysqlpp::Row &row = res2[i];
749
750	// 1003 //
751	cout << row["Level"] << '[' << row["Code"] << "]:\n";
752	if (uint32_t(row["Code"])==1003)
753	format(row["Message"].c_str());
754	else
755	cout << row["Message"] << '\n' << endl;
756
757	}
758
759	}
760	catch (const exception &e)
761	{
762	cerr << '\n' << query << "\n\n";
763	cerr << "SQL query failed:\n" << e.what() << endl;
764	return 12;
765	}
766
767	return 0;
768	}
769
770	// -------------------------- Request data from database -------------------
771	if (verbose>0)
772	cout << "Requesting data... please be patient!" << endl;
773
774	if (verbose>2)
775	cout << '\n' << query << endl;
776
777	const mysqlpp::UseQueryResult res =
778	connection.query(query).use();
779
780	// -------------------------------------------------------------------------
781
782	if (verbose>0)
783	{
784	cout << "Opening file '" << path << "' [compression=" << compression << "]...\n";
785	cout << "Writing data to tree '" << tree << "'" << (nofill?" (--skipped--)":"") << endl;
786	split.print();
787	}
788
789	// ----------------------------- Open output file --------------------------
790	TFile tfile(path, update?"UPDATE":(force?"RECREATE":"CREATE"), "Rootify SQL", compression);
791	if (tfile.IsZombie())
792	return 13;
793
794	// -------------------------------------------------------------------------
795
796	// get the first row to get the field description
797	mysqlpp::Row row = res.fetch_row();
798	if (!row)
799	{
800	cerr << "Empty set returned... nothing to write." << endl;
801	return finish(connection, verbose, profiling, print_connection)+20;
802	}
803
804	if (verbose>0)
805	cout << "Trying to setup " << row.size() << " branches..." << endl;
806
807	if (verbose>1)
808	cout << endl;
809
810	const mysqlpp::FieldNames &l = *row.field_list().list;
811
812	vector<double> buf(l.size());
813	vector<uint8_t> typ(l.size(),'n'); // n=number [double], d is used for DateTime
814
815	UInt_t cols = 0;
816
817	// IMPLEMENT FILE SPLITTING!
818	// OpenFile(tree, query)
819	// SetupColumns
820	// WriteRow
821	// CloseFile
822
823	// Ratio[3]: 50%, 20%, 30%
824	// File[x3]: root, cout, fout
825
826
827	// -------------------- Configure branches of TTree ------------------------
828	vector<TTree*> ttree;
829
830	if (split.empty())
831	ttree.emplace_back(new TTree(tree.c_str(), query.c_str()));
832	else
833	for (size_t i=0; i<split.size(); i++)
834	ttree.emplace_back(new TTree((tree+"["+to_string(i)+"]").c_str(), query.c_str()));
835
836	size_t skipat = 0;
837	size_t skipreg = 0;
838	for (size_t i=0; i<l.size(); i++)
839	{
840	const string t = row[i].type().sql_name();
841
842	if (t.find("DATETIME")!=string::npos)
843	typ[i] = 'd';
844	else
845	if (t.find("DATE")!=string::npos)
846	typ[i] = 'D';
847	else
848	if (t.find("TIME")!=string::npos)
849	typ[i] = 'T';
850	else
851	if (t.find("VARCHAR")!=string::npos)
852	typ[i] = 'V';
853	else
854	if (t.find("CHAR")!=string::npos)
855	typ[i] = 'C';
856
857	bool found = false;
858	for (auto pattern=_ignore.cbegin(); pattern!=_ignore.cend(); pattern++)
859	{
860	if (boost::regex_match(l[i], boost::regex(*pattern)))
861	{
862	found = true;
863	typ[i] = '-';
864	skipreg++;
865	break;
866	}
867	}
868
869	if (l[i][0]=='@')
870	{
871	typ[i] = '@';
872	skipat++;
873	}
874
875	const bool use = l[i][0]!='@' && typ[i]!='V' && typ[i]!='C' && !found;
876
877	if (verbose>1)
878	cout << (use?" + ":" - ") << l[i].c_str() << " [" << t << "] {" << typ[i] << "}\n";
879
880	if (use)
881	{
882	// string name = l[i];
883	// for (const auto &m: mymap)
884	// name = boost::regex_replace(l[i], boost::regex(m.first), m.second);
885
886	for (auto it=ttree.begin(); it!=ttree.end(); it++)
887	it[0]->Branch(l[i].c_str(), buf.data()+i);
888	cols++;
889	}
890	}
891	// -------------------------------------------------------------------------
892
893	if (verbose>1)
894	cout << endl;
895	if (verbose>0)
896	{
897	if (skipreg)
898	cout << skipreg << " branches skipped due to ignore list." << endl;
899	if (skipat)
900	cout << skipat << " branches skipped due to name starting with @." << endl;
901	cout << "Configured " << cols << " branches.\nFilling branches..." << endl;
902	}
903
904	// ------------------------- Open the ascii files --------------------------
905
906	vector<ofstream> fout;
907	if (!write.empty())
908	{
909	vector<string> names;
910	if (split.empty())
911	names.emplace_back(write);
912	else
913	for (size_t i=0; i<split.size(); i++)
914	names.emplace_back(write+"-"+to_string(i));
915
916	for (auto it=names.cbegin(); it!=names.cend(); it++)
917	{
918	fout.emplace_back(*it);
919	if (!*fout.rbegin())
920	cout << "WARNING: Writing to '" << write << "' failed: " << strerror(errno) << endl;
921	}
922	}
923
924	// ----------------------- Prepare the ascii comment -----------------------
925
926	string contents;
927
928	istringstream istr(query);
929	size_t line = 0;
930	bool header = true;
931	while (istr)
932	{
933	string ibuf;
934	getline(istr, ibuf);
935	const string sbuf = Tools::Trim(ibuf);
936
937	const bool shabang = line==0 && ibuf[0]=='#' && ibuf[1]=='!';
938	const bool comment = sbuf[0]=='#' && !shabang;
939	const bool isquery = !shabang && !comment;
940	if (isquery)
941	header = false;
942
943	line++;
944
945	if ((copy_shabang && shabang) \|\|
946	(copy_header && comment && header) \|\|
947	(copy_query && isquery) \|\|
948	(copy_comments && comment && !header))
949	contents += '#' + ibuf + '\n';
950	}
951
952	// ----------------------- Write the ascii headers -------------------------
953
954	ostringstream htxt;
955	if (display \|\| !fout.empty())
956	htxt << row.field_list(delimiter.c_str());
957
958	if (display)
959	{
960	cout << endl;
961	cout << contents << endl;
962	cout << "# " << htxt.str() << endl;
963	}
964	for (auto ff=fout.begin(); ff!=fout.end(); ff++)
965	{
966	*ff << contents;
967	*ff << "# " << htxt.str() << endl;
968	}
969
970	// ---------------------- Fill TTree with DB data --------------------------
971
972	size_t count = 0;
973	size_t skip = 0;
974	do
975	{
976	size_t index = split.index(count++);
977
978	ostringstream rtxt;
979	if (display \|\| !fout.empty())
980	rtxt << row.value_list(delimiter.c_str(), mysqlpp::do_nothing);
981
982	if (display)
983	cout << rtxt.str() << '\n';
984	if (!fout.empty())
985	fout[index] << rtxt.str() << '\n';
986
987	size_t idx=0;
988	for (auto col=row.begin(); col!=row.end(); col++, idx++)
989	{
990	if (!ignorenull && col->is_null())
991	{
992	skip++;
993	break;
994	}
995
996	switch (typ[idx])
997	{
998	case 'd':
999	buf[idx] = time_t((mysqlpp::DateTime)(*col));
1000	break;
1001
1002	case 'D':
1003	buf[idx] = time_t((mysqlpp::Date)(*col));
1004	break;
1005
1006	case 'T':
1007	buf[idx] = time_t((mysqlpp::Time)(*col));
1008	break;
1009
1010	case 'V':
1011	case 'C':
1012	case '-':
1013	case '@':
1014	break;
1015
1016	default:
1017	buf[idx] = atof(col->c_str());
1018	}
1019	}
1020
1021	if (idx==row.size() && !nofill)
1022	ttree[index]->Fill();
1023
1024	row = res.fetch_row();
1025
1026
1027	} while (row);
1028
1029	// -------------------------------------------------------------------------
1030
1031	if (display)
1032	cout << '\n' << endl;
1033
1034	if (verbose>0)
1035	{
1036	cout << count << " rows fetched." << endl;
1037	if (skip>0)
1038	cout << skip << " rows skipped due to NULL field." << endl;
1039
1040	for (size_t i=0; i<ttree.size(); i++)
1041	cout << ttree[i]->GetEntries() << " rows filled into tree #" << i << "." << endl;
1042	}
1043
1044	for (auto it=ttree.begin(); it!=ttree.end(); it++)
1045	(*it)->Write();
1046	tfile.Close();
1047
1048	if (verbose>0)
1049	{
1050	const auto sec = Time().UnixTime()-start.UnixTime();
1051
1052	cout << Tools::Scientific(tfile.GetSize()) << "B written to disk.\n";
1053	cout << "File closed.\n";
1054	cout << "Execution time: " << sec << "s ";
1055	cout << "(" << Tools::Fractional(sec/count) << "s/row)\n";
1056	cout << "--------------------------------------------------------------" << endl;
1057	}
1058
1059	return finish(connection, verbose, profiling, print_connection);
1060	}

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