| 1 | #include <TROOT.h>
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| 2 | #include <TClass.h>
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| 3 | #include <TSystem.h>
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| 4 | #include <TGClient.h>
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| 5 | #include <TApplication.h>
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| 6 | #include <TObjectTable.h>
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| 7 | 
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| 8 | #include "MLog.h"
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| 9 | #include "MLogManip.h"
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| 10 | 
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| 11 | #include "MEnv.h"
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| 12 | #include "MArgs.h"
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| 13 | #include "MArray.h"
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| 14 | #include "MDirIter.h"
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| 15 | 
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| 16 | #include "MStatusDisplay.h"
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| 17 | 
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| 18 | #include "MSequence.h"
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| 19 | #include "MJPedestal.h"
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| 20 | #include "MJCalibration.h"
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| 21 | #include "MJCalibrateSignal.h"
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| 22 | #include "MJCalibTest.h"
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| 23 | 
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| 24 | using namespace std;
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| 25 | 
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| 26 | static void StartUpMessage()
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| 27 | {
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| 28 |     gLog << all << endl;
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| 29 | 
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| 30 |     //                1         2         3         4         5
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| 31 |     //       12345678901234567890123456789012345678901234567890
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| 32 |     gLog << "========================================================" << endl;
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| 33 |     gLog << "                 Callisto - MARS V" << MARSVER            << endl;
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| 34 |     gLog << "    MARS -- CALibrate LIght Signals and Time Offsets"     << endl;
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| 35 |     gLog << "               Compiled on <" << __DATE__ << ">"          << endl;
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| 36 |     gLog << "                  Using ROOT v" << ROOTVER                << endl;
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| 37 |     gLog << "========================================================" << endl;
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| 38 |     gLog << endl;
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| 39 | }
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| 40 | 
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| 41 | static void Usage()
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| 42 | {
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| 43 |     //                1         2         3         4         5         6         7         8
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| 44 |     //       12345678901234567890123456789012345678901234567890123456789012345678901234567890
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| 45 |     gLog << all << endl;
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| 46 |     gLog << "Sorry the usage is:" << endl;
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| 47 |     gLog << " callisto [-c] [-y] [options] sequence.txt" << endl << endl;
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| 48 |     gLog << " Arguments:" << endl;
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| 49 |     gLog << "   sequence.txt:             Ascii file defining a sequence of runs" << endl;
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| 50 |     gLog << "                             For more details see MSequence" << endl;
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| 51 |     gLog << " Root Options:" << endl;
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| 52 |     gLog << "   -b                        Batch mode (no graphical output to screen)" << endl<<endl;
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| 53 |     gLog << " Operation Modes:" << endl;
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| 54 |     gLog << "   -c                        Calculate the calibration constants" << endl;
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| 55 |     gLog << "   -y                        Extract and calibrate signal" << endl << endl;
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| 56 |     gLog << " Data Type (exclusive):" << endl;
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| 57 |     gLog << "   -raw                      Read input from raw-data" << endl;
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| 58 |     gLog << "   -mc                       Input root-files are monte carlo files" << endl;
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| 59 |     gLog << "   -root                     Read input from root-files (merpped) <default>" << endl << endl;
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| 60 |     gLog << " Options:" << endl;
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| 61 |     gLog.Usage();
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| 62 |     gLog << "   --debug-env=0             Disable debugging setting resources <default>" << endl;
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| 63 |     gLog << "   --debug-env[=1]           Display untouched resources after program execution" << endl;
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| 64 |     gLog << "   --debug-env=2             Display untouched resources after eventloop setup" << endl;
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| 65 |     gLog << "   --debug-env=3             Debug setting resources from resource file" << endl;
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| 66 |     gLog << "   --debug-mem               Debug memory usage" << endl << endl;
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| 67 |     gLog << endl;
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| 68 |     gLog << "   -q                        Quit when job is finished" << endl;
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| 69 |     gLog << "   -f                        Force overwrite of existing files" << endl;
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| 70 |     gLog << "   --ind=path                Path where to search for the data files" << endl;
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| 71 |     gLog << "                             [default=standard path in datacenter]" << endl;
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| 72 |     gLog << "   --iny=path                Path where to search for the calibration files" << endl;
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| 73 |     gLog << "                             [default=local path or output path of Mode-C]" << endl;
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| 74 |     gLog << "   --outc=path               Path to write Mode-C result to   [def=local path]" << endl;
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| 75 |     gLog << "   --outy=path               Path to write Mode-Y result to   [def=local path]" << endl;
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| 76 |     gLog << "   --out=path                Path to write the all results to [def=local path]" << endl;
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| 77 |     gLog << "                             (overwrites --outc and --outy)" << endl;
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| 78 |     gLog << "   --path=path               Path to write the all results to [def=local path]" << endl;
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| 79 |     gLog << "                             (overwrites --iny, --outc and --outy)" << endl;
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| 80 |     gLog << "   --print-seq               Print Sequence information" << endl;
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| 81 |     gLog << "   --print-files             Print Files taken from Sequence" << endl;
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| 82 |     gLog << "   --print-found             Print Files found from Sequence" << endl;
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| 83 |     gLog << "   --use-test                Apply calibration constants to same calibration" << endl;
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| 84 |     gLog << "                             file (for testing, calibration mode only)" << endl;
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| 85 |     gLog << "   --moon                    Force using pedestal fits instead of calculated RMS" << endl;
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| 86 |     gLog << "   --config=callisto.rc      Resource file [default=callisto.rc]" << endl;
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| 87 |     gLog << endl;
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| 88 |     gLog << "   --version, -V             Show startup message with version number" << endl;
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| 89 |     gLog << "   -?, -h, --help            This help" << endl << endl;
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| 90 |     gLog << " Setup of the two jobs run by callisto (MJPedestal and MJCalibration)" << endl;
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| 91 |     gLog << " can be done with the resource file. See MJPedestal and MJCalibration" << endl;
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| 92 |     gLog << " especially CheckEnv() for more details.   Command line options might" << endl;
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| 93 |     gLog << " be overwritten by the resource file." << endl << endl;
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| 94 |     gLog << " If running in Mode-C and Mode-Y --iny= is obsolete,  instead --outc=" << endl;
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| 95 |     gLog << " is used." << endl << endl;
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| 96 |     gLog << " Using  --iny=,  --outc=,  --outy=,  --out=  or --path= automatically" << endl;
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| 97 |     gLog << " enables the corresponmding modes.  In this case  -c/-y are obsolete." << endl << endl;
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| 98 |     gLog << "Description:" << endl;
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| 99 |     gLog << " callisto will calculate pedestals  from  pedestal-files defined in a" << endl;
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| 100 |     gLog << " sequence-file.  This pedestals are used to calculate the calibration" << endl;
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| 101 |     gLog << " contants. These constants are stored in a so called calibration-file" << endl;
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| 102 |     gLog << " together with some datacheck plots  which can be viewed using either" << endl;
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| 103 |     gLog << " showplot or MStatusDisplay in the interpreter.  A description  of  a" << endl;
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| 104 |     gLog << " sequence-file can be found in the class reference of MSequence." << endl << endl;
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| 105 |     gLog << "Background:" << endl;
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| 106 |     gLog << " Callisto is a large,  icy,  dark-colored,  low-density outer moon of" << endl;
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| 107 |     gLog << " Jupiter that is scarred with  impact craters  and  ejecta.  It has a" << endl;
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| 108 |     gLog << " diameter of about 4800km, the second-largest moon of Jupiter;  it is" << endl;
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| 109 |     gLog << " roughly the size of  Mercury.  Callisto has the largest-known impact" << endl;
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| 110 |     gLog << " crater in the Solar System, Valhalla, which has a bright patch 600km" << endl;
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| 111 |     gLog << " across  and  rings that go out  to almost  3000km.  Callisto  orbits" << endl;
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| 112 |     gLog << " Jupiter at a mean distance of 1,883,000km. Its mass is 1.1e23 kg. It" << endl;
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| 113 |     gLog << " takes Callisto  16.7 days to orbit  Jupiter  in a synchronous orbit." << endl;
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| 114 |     gLog << " Jupiter's moon Callisto was discovered independantly by  Galileo and" << endl;
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| 115 |     gLog << " S.Marius in 1610." << endl << endl;
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| 116 |     gLog << "Example:" << endl;
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| 117 |     gLog << " callisto -f --outc=mycal/ --outy=mysignal/ --log sequence02345.txt" << endl;
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| 118 |     gLog << endl;
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| 119 | }
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| 120 | 
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| 121 | static void PrintFiles(const MSequence &seq, const TString &kInpathD, Bool_t raw, Bool_t all)
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| 122 | {
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| 123 |     const char *prep = all ? "Found" : "Scheduled";
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| 124 | 
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| 125 |     MDirIter Next1, Next2, Next3;
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| 126 |     seq.SetupPedRuns(Next1, kInpathD, "P", raw);
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| 127 |     seq.SetupCalRuns(Next2, kInpathD, "C", raw);
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| 128 |     seq.SetupDatRuns(Next3, kInpathD, "D", raw);
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| 129 | 
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| 130 |     gLog << all;
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| 131 |     gLog.Separator(Form("%s Pedestal Files", prep));
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| 132 |     Next1.Print(all?"all":"");
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| 133 |     gLog << endl;
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| 134 |     gLog.Separator(Form("%s Calibration Files", prep));
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| 135 |     Next2.Print(all?"all":"");
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| 136 |     gLog << endl;
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| 137 |     gLog.Separator(Form("%s Data Files", prep));
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| 138 |     Next3.Print(all?"all":"");
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| 139 |     gLog << endl;
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| 140 | }
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| 141 | 
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| 142 | int main(int argc, char **argv)
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| 143 | {
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| 144 |     StartUpMessage();
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| 145 | 
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| 146 |     //
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| 147 |     // Evaluate arguments
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| 148 |     //
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| 149 |     MArgs arg(argc, argv, kTRUE);
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| 150 | 
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| 151 |     if (arg.HasOnly("-V") || arg.HasOnly("--version"))
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| 152 |         return 0;
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| 153 | 
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| 154 |     if (arg.HasOnly("-?") || arg.HasOnly("-h") || arg.HasOnly("--help"))
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| 155 |     {
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| 156 |         Usage();
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| 157 |         return 2;
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| 158 |     }
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| 159 | 
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| 160 |     gLog.Setup(arg);
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| 161 | 
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| 162 |     const TString kConfig     = arg.GetStringAndRemove("--config=", "callisto.rc");
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| 163 | 
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| 164 |     const Bool_t  kPrintSeq   = arg.HasOnlyAndRemove("--print-seq");
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| 165 |     const Bool_t  kPrintFiles = arg.HasOnlyAndRemove("--print-files");
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| 166 |     const Bool_t  kPrintFound = arg.HasOnlyAndRemove("--print-found");
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| 167 |     const Bool_t  kUseTest    = arg.HasOnlyAndRemove("--use-test");
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| 168 |     const Bool_t  kDebugMem   = arg.HasOnlyAndRemove("--debug-mem");
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| 169 |           Bool_t  kMoon       = arg.HasOnlyAndRemove("--moon");
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| 170 |     Int_t kDebugEnv = arg.HasOnlyAndRemove("--debug-env") ? 1 : 0;
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| 171 |     kDebugEnv = arg.GetIntAndRemove("--debug-env=", kDebugEnv);
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| 172 | 
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| 173 |     const Bool_t  kQuit       = arg.HasOnlyAndRemove("-q");
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| 174 |     const Bool_t  kBatch      = arg.HasOnlyAndRemove("-b");
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| 175 |     const Bool_t  kOverwrite  = arg.HasOnlyAndRemove("-f");
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| 176 |     //const Bool_t  kForceExec  = arg.HasOnlyAndRemove("-ff");
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| 177 | 
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| 178 |     const TString kInpathD    = arg.GetStringAndRemove("--ind=",  "");
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| 179 |           TString kInpathY    = arg.GetStringAndRemove("--iny=",  "");
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| 180 |           TString kOutpathY   = arg.GetStringAndRemove("--outy=", "");
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| 181 |           TString kOutpathC   = arg.GetStringAndRemove("--outc=", "");
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| 182 |     const TString kOutpath    = arg.GetStringAndRemove("--out=",  "");
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| 183 |     const TString kPath       = arg.GetStringAndRemove("--path=", "");
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| 184 | 
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| 185 |           Bool_t  kModeC      = arg.HasOnlyAndRemove("-c");
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| 186 |           Bool_t  kModeY      = arg.HasOnlyAndRemove("-y");
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| 187 | 
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| 188 |     MJCalib::DataType_t kDataType = MJCalib::kIsUseRootData; // root
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| 189 |     if (arg.HasOnlyAndRemove("-raw"))
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| 190 |         kDataType = MJCalib::kIsUseRawData;  // raw
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| 191 |     if (arg.HasOnlyAndRemove("-mc"))
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| 192 |         kDataType = MJCalib::kIsUseMC;       // monte carlo
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| 193 | 
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| 194 |     if (!kInpathY.IsNull() || !kOutpathY.IsNull() || !kOutpath.IsNull() || !kPath.IsNull())
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| 195 |         kModeY = kTRUE;
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| 196 |     if (!kOutpathC.IsNull() || !kOutpath.IsNull() || !kPath.IsNull())
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| 197 |         kModeC = kTRUE;
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| 198 | 
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| 199 |     if (!kModeC && !kModeY /*&& !kUseTest*/)
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| 200 |     {
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| 201 |         gLog << err << "Neither calibration (-c) nor signal extraction (-y) or test-mode (--use-test) specified!" << endl;
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| 202 |         Usage();
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| 203 |         return 2;
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| 204 |     }
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| 205 | 
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| 206 |     if ((kModeC/* || kUseTest*/) && kOutpathC.IsNull())
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| 207 |         kOutpathC = ".";
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| 208 |     if (kModeY)
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| 209 |     {
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| 210 |         if (kInpathY.IsNull())
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| 211 |             kInpathY = ".";
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| 212 |         if (kOutpathY.IsNull())
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| 213 |             kOutpathY = ".";
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| 214 |     }
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| 215 |     if (!kOutpath.IsNull())
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| 216 |     {
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| 217 |         kOutpathC = kOutpath;
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| 218 |         kOutpathY = kOutpath;
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| 219 |     }
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| 220 |     if (!kPath.IsNull())
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| 221 |     {
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| 222 |         kOutpathC = kOutpath;
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| 223 |         kOutpathY = kOutpath;
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| 224 |         kInpathY  = kOutpath;
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| 225 |     }
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| 226 | 
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| 227 |     if (kModeC && kModeY)
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| 228 |         kInpathY = kOutpathC;
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| 229 | 
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| 230 |     if (arg.GetNumOptions()>0)
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| 231 |     {
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| 232 |         gLog << warn << "WARNING - Unknown commandline options..." << endl;
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| 233 |         arg.Print("options");
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| 234 |         gLog << endl;
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| 235 |         return 2;
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| 236 |     }
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| 237 | 
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| 238 |     //
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| 239 |     // check for the right usage of the program
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| 240 |     //
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| 241 |     if (arg.GetNumArguments()!=1)
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| 242 |     {
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| 243 |         Usage();
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| 244 |         return 2;
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| 245 |     }
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| 246 | 
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| 247 |     //
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| 248 |     // Setup sequence file and check for its existance
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| 249 |     //
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| 250 |     const TString kSequence = arg.GetArgumentStr(0);
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| 251 | 
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| 252 |     if (gSystem->AccessPathName(kSequence, kFileExists))
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| 253 |     {
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| 254 |         gLog << err << "Sorry, sequence file '" << kSequence << "' doesn't exist." << endl;
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| 255 |         return 2;
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| 256 |     }
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| 257 | 
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| 258 |     if (gSystem->AccessPathName(kConfig, kFileExists))
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| 259 |     {
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| 260 |         gLog << err << "Sorry, config file '" << kConfig << "' doesn't exist." << endl;
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| 261 |         return 2;
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| 262 |     }
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| 263 | 
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| 264 |     if (kDebugMem)
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| 265 |         TObject::SetObjectStat(kTRUE);
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| 266 | 
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| 267 |     //
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| 268 |     // Setup sequence and check its validity
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| 269 |     //
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| 270 |     MSequence seq(kSequence);
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| 271 |     if (kPrintSeq)
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| 272 |     {
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| 273 |         gLog << all;
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| 274 |         gLog.Separator(kSequence);
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| 275 |         seq.Print();
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| 276 |         gLog << endl;
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| 277 |     }
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| 278 |     if (!seq.IsValid())
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| 279 |     {
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| 280 |         gLog << err << "Sequence read but not valid!" << endl << endl;
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| 281 |         return 2;
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| 282 |     }
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| 283 | 
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| 284 |     //
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| 285 |     // Process print options
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| 286 |     //
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| 287 |     if (kPrintFiles)
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| 288 |         PrintFiles(seq, kInpathD, kDataType==MJCalib::kIsUseRawData, kFALSE);
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| 289 |     if (kPrintFound)
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| 290 |         PrintFiles(seq, kInpathD, kDataType==MJCalib::kIsUseRawData, kTRUE);
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| 291 | 
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| 292 |     if (seq.HasMoon())
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| 293 |         kMoon = kTRUE;
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| 294 | 
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| 295 | 
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| 296 |     /*
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| 297 |     //
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| 298 |     // Check for existance of all files
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| 299 |     //
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| 300 |     MDirIter iter;
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| 301 |     const Int_t n0 = seq.SetupAllRuns(iter, kInpathD, "[DPC]");
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| 302 |     const Int_t n1 = seq.GetNumAllRuns();
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| 303 |     if (n0 != n1)
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| 304 |     {
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| 305 |         if (kForceExec)
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| 306 |             gLog << warn << "WARNING";
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| 307 |         else
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| 308 |             gLog << err << "ERROR";
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| 309 |         gLog << " - " << n1 << " files in sequence defined, but " << n0 << " found in ";
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| 310 |         gLog << (kInpathD.IsNull() ? "<defaultpath>" : kInpathD.Data()) << endl;
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| 311 |         if (!kForceExec)
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| 312 |             return 2;
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| 313 |     }
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| 314 | 
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| 315 |     if (kPrintOnly)
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| 316 |         return 0;
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| 317 |   */
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| 318 |     //
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| 319 |     // Initialize root
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| 320 |     //
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| 321 |     MArray::Class()->IgnoreTObjectStreamer();
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| 322 |     MParContainer::Class()->IgnoreTObjectStreamer();
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| 323 | 
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| 324 |     TApplication app("Callisto", &argc, argv);
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| 325 |     if (!gROOT->IsBatch() && !gClient || gROOT->IsBatch() && !kBatch)
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| 326 |     {
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| 327 |         gLog << err << "Bombing... maybe your DISPLAY variable is not set correctly!" << endl;
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| 328 |         return 1;
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| 329 |     }
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| 330 | 
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| 331 |     //
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| 332 |     // Update frequency by default = 1Hz
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| 333 |     //
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| 334 |     MStatusDisplay *d = new MStatusDisplay;
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| 335 | 
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| 336 |     // From now on each 'Exit' means: Terminate the application
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| 337 |     d->SetBit(MStatusDisplay::kExitLoopOnExit);
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| 338 |     d->SetTitle(kSequence);
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| 339 | 
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| 340 |     MEnv env(kConfig);
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| 341 |     if (kModeC/* || kUseTest*/)
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| 342 |     {
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| 343 |         //
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| 344 |         // Calculate pedestal for pedestal-calculation and calibration
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| 345 |         //
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| 346 |         MJPedestal job1(Form("MJPedestalC1 #%d", seq.GetSequence()));
 | 
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| 347 |         job1.SetNoStorage();
 | 
|---|
| 348 |         job1.SetSequence(seq);
 | 
|---|
| 349 |         job1.SetEnv(&env);
 | 
|---|
| 350 |         job1.SetEnvDebug(kDebugEnv);
 | 
|---|
| 351 |         job1.SetDisplay(d);
 | 
|---|
| 352 |         job1.SetOverwrite(kOverwrite);
 | 
|---|
| 353 |         job1.SetPathData(kInpathD);
 | 
|---|
| 354 |         job1.SetDataType(kDataType);
 | 
|---|
| 355 |         job1.SetUseHists(kMoon);
 | 
|---|
| 356 | 
 | 
|---|
| 357 | 
 | 
|---|
| 358 |         job1.SetExtractionFundamental();
 | 
|---|
| 359 |         // job1.SetPathOut(kOutpathC); // not yet needed
 | 
|---|
| 360 |         // job1.SetPathIn(kInpathC);   // not yet needed
 | 
|---|
| 361 | 
 | 
|---|
| 362 |         if (!job1.ProcessFile())
 | 
|---|
| 363 |         {
 | 
|---|
| 364 |             gLog << err << "Calculation of pedestal failed." << endl << endl;
 | 
|---|
| 365 |             return 2;
 | 
|---|
| 366 |         }
 | 
|---|
| 367 | 
 | 
|---|
| 368 |         if (!job1.GetDisplay())
 | 
|---|
| 369 |         {
 | 
|---|
| 370 |             gLog << warn << "Display closed by user... execution aborted." << endl << endl;
 | 
|---|
| 371 |             return 1;
 | 
|---|
| 372 |         }
 | 
|---|
| 373 | 
 | 
|---|
| 374 |         //
 | 
|---|
| 375 |         // Calculate pedestal and pedestal resolution
 | 
|---|
| 376 |         //
 | 
|---|
| 377 |         MJPedestal job2(Form("MJPedestalC2 #%d", seq.GetSequence()));
 | 
|---|
| 378 |         job2.SetNoStorage();
 | 
|---|
| 379 |         job2.SetSequence(seq);
 | 
|---|
| 380 |         job2.SetEnv(&env);
 | 
|---|
| 381 |         job2.SetEnvDebug(kDebugEnv);
 | 
|---|
| 382 |         job2.SetDisplay(d);;
 | 
|---|
| 383 |         job2.SetOverwrite(kOverwrite);
 | 
|---|
| 384 |         job2.SetPathData(kInpathD);
 | 
|---|
| 385 |         job2.SetDataType(kDataType);
 | 
|---|
| 386 |         job2.SetUseHists(kMoon);
 | 
|---|
| 387 |         // job1.SetPathOut(kOutpathC); // not yet needed
 | 
|---|
| 388 |         // job1.SetPathIn(kInpathC);   // not yet needed
 | 
|---|
| 389 | 
 | 
|---|
| 390 |         //job2.SetExtractorResolution();
 | 
|---|
| 391 |         job2.SetExtractionWithExtractorRndm();
 | 
|---|
| 392 |         job2.SetExtractor(job1.GetExtractor());
 | 
|---|
| 393 |         job2.SetPedestals(job1.GetPedestalCam());
 | 
|---|
| 394 |         job2.SetBadPixels(job1.GetBadPixels());
 | 
|---|
| 395 | 
 | 
|---|
| 396 |         if (!job2.ProcessFile())
 | 
|---|
| 397 |         {
 | 
|---|
| 398 |             gLog << err << "Calculation of pedestal resolution failed." << endl << endl;
 | 
|---|
| 399 |             return 2;
 | 
|---|
| 400 |         }
 | 
|---|
| 401 | 
 | 
|---|
| 402 |         if (!job2.GetDisplay())
 | 
|---|
| 403 |         {
 | 
|---|
| 404 |             gLog << warn << "Display closed by user... execution aborted." << endl << endl;
 | 
|---|
| 405 |             return 1;
 | 
|---|
| 406 |         }
 | 
|---|
| 407 | 
 | 
|---|
| 408 |         //
 | 
|---|
| 409 |         // Do calibration
 | 
|---|
| 410 |         //
 | 
|---|
| 411 |         MJCalibration job3(Form("MJCalibration #%d", seq.GetSequence()));
 | 
|---|
| 412 |         job3.SetSequence(seq);
 | 
|---|
| 413 |         job3.SetEnv(&env);
 | 
|---|
| 414 |         job3.SetEnvDebug(kDebugEnv);
 | 
|---|
| 415 |         job3.SetDisplay(d);
 | 
|---|
| 416 |         job3.SetOverwrite(kOverwrite);
 | 
|---|
| 417 |         job3.SetPathOut(kOutpathC);
 | 
|---|
| 418 |         job3.SetPathData(kInpathD);
 | 
|---|
| 419 |         job3.SetDataType(kDataType);
 | 
|---|
| 420 |         // job2.SetPathIn(kInpathC); // not yet needed
 | 
|---|
| 421 | 
 | 
|---|
| 422 |         job3.SetBadPixels(job2.GetBadPixels());
 | 
|---|
| 423 |         job3.SetExtractor(job2.GetExtractor());
 | 
|---|
| 424 |         job3.SetExtractorCam(job2.GetPedestalCam());
 | 
|---|
| 425 | 
 | 
|---|
| 426 |         if (!job3.ProcessFile(job1.GetPedestalCam()))
 | 
|---|
| 427 |         {
 | 
|---|
| 428 |             gLog << err << "Calculation of calibration failed." << endl << endl;
 | 
|---|
| 429 |             return 2;
 | 
|---|
| 430 |         }
 | 
|---|
| 431 | 
 | 
|---|
| 432 |         if (kDebugEnv>0)
 | 
|---|
| 433 |             env.PrintUntouched();
 | 
|---|
| 434 | 
 | 
|---|
| 435 |         if (!job3.GetDisplay())
 | 
|---|
| 436 |         {
 | 
|---|
| 437 |             gLog << warn << "Display closed by user... execution aborted." << endl << endl;
 | 
|---|
| 438 |             return 1;
 | 
|---|
| 439 |         }
 | 
|---|
| 440 | 
 | 
|---|
| 441 |         if (kUseTest)
 | 
|---|
| 442 |         {
 | 
|---|
| 443 |             MJCalibTest job4(Form("MJCalibTest #%d", seq.GetSequence()));
 | 
|---|
| 444 |             job4.SetBadPixels(job2.GetBadPixels());
 | 
|---|
| 445 |             job4.SetSequence(seq);
 | 
|---|
| 446 |             job4.SetEnv(&env);
 | 
|---|
| 447 |             job4.SetEnvDebug(kDebugEnv);
 | 
|---|
| 448 |             job4.SetDisplay(d);;
 | 
|---|
| 449 |             job4.SetOverwrite(kOverwrite);
 | 
|---|
| 450 |             job4.SetPathOut(kOutpathC);
 | 
|---|
| 451 |             job4.SetPathData(kInpathD);
 | 
|---|
| 452 |             job4.SetDataType(kDataType);
 | 
|---|
| 453 | 
 | 
|---|
| 454 |             if (!job4.ProcessFile(job1.GetPedestalCam()))
 | 
|---|
| 455 |             {
 | 
|---|
| 456 |                 gLog << err << "Calibration of calibration failed." << endl << endl;
 | 
|---|
| 457 |                 return 2;
 | 
|---|
| 458 |             }
 | 
|---|
| 459 | 
 | 
|---|
| 460 |             if (kDebugEnv>0)
 | 
|---|
| 461 |                 env.PrintUntouched();
 | 
|---|
| 462 | 
 | 
|---|
| 463 |             if (!job4.GetDisplay())
 | 
|---|
| 464 |             {
 | 
|---|
| 465 |                 gLog << warn << "Display closed by user... execution aborted." << endl << endl;
 | 
|---|
| 466 |                 return 1;
 | 
|---|
| 467 |             }
 | 
|---|
| 468 |         }
 | 
|---|
| 469 |     }
 | 
|---|
| 470 | 
 | 
|---|
| 471 |     if (kModeY)
 | 
|---|
| 472 |     {
 | 
|---|
| 473 |         d->Reset();
 | 
|---|
| 474 | 
 | 
|---|
| 475 |         //
 | 
|---|
| 476 |         // Calculate starting pedestal for data extraction
 | 
|---|
| 477 |         //
 | 
|---|
| 478 |         MJPedestal job1(Form("MJPedestalY1 #%d", seq.GetSequence()));
 | 
|---|
| 479 |         job1.SetNoStorage();
 | 
|---|
| 480 |         job1.SetSequence(seq);
 | 
|---|
| 481 |         job1.SetEnv(&env);
 | 
|---|
| 482 |         job1.SetEnvDebug(kDebugEnv);
 | 
|---|
| 483 |         job1.SetDisplay(d);
 | 
|---|
| 484 |         job1.SetNoDisplay();
 | 
|---|
| 485 |         job1.SetOverwrite(kOverwrite);
 | 
|---|
| 486 |         job1.SetPathData(kInpathD);
 | 
|---|
| 487 |         job1.SetPathIn(kInpathY);
 | 
|---|
| 488 |         job1.SetDataType(kDataType);
 | 
|---|
| 489 |         //job1.SetPathOut(kOutpathY);   // not yet needed
 | 
|---|
| 490 |         job1.SetUseData();
 | 
|---|
| 491 |         job1.SetExtractionFundamental();
 | 
|---|
| 492 |         job1.SetUseHists(kMoon);
 | 
|---|
| 493 | 
 | 
|---|
| 494 |         if (!job1.ProcessFile())
 | 
|---|
| 495 |         {
 | 
|---|
| 496 |             gLog << err << "Calculation of fundamental pedestal failed." << endl << endl;
 | 
|---|
| 497 |             return 2;
 | 
|---|
| 498 |         }
 | 
|---|
| 499 | 
 | 
|---|
| 500 |         if (!job1.GetDisplay())
 | 
|---|
| 501 |         {
 | 
|---|
| 502 |             gLog << warn << "Display closed by user... execution aborted." << endl << endl;
 | 
|---|
| 503 |             return 1;
 | 
|---|
| 504 |         }
 | 
|---|
| 505 | 
 | 
|---|
| 506 |         //
 | 
|---|
| 507 |         // Calculate pedestal and pedestal resolution
 | 
|---|
| 508 |         //
 | 
|---|
| 509 |         MJPedestal job2(Form("MJPedestalY2 #%d", seq.GetSequence()));
 | 
|---|
| 510 |         job2.SetNoStorage();
 | 
|---|
| 511 |         job2.SetSequence(seq);
 | 
|---|
| 512 |         job2.SetEnv(&env);
 | 
|---|
| 513 |         job2.SetEnvDebug(kDebugEnv);
 | 
|---|
| 514 |         job2.SetDisplay(d);
 | 
|---|
| 515 |         job2.SetNoDisplay();
 | 
|---|
| 516 |         job2.SetOverwrite(kOverwrite);
 | 
|---|
| 517 |         job2.SetPathData(kInpathD);
 | 
|---|
| 518 |         job2.SetPathIn(kInpathY);
 | 
|---|
| 519 |         job2.SetDataType(kDataType);
 | 
|---|
| 520 |         job2.SetPulsePosCheck(kDataType!=MJCalib::kIsUseMC);
 | 
|---|
| 521 |         job2.SetPathOut(kOutpathY); // for updating the extractor
 | 
|---|
| 522 | 
 | 
|---|
| 523 |         job2.SetUseData();
 | 
|---|
| 524 |         job2.SetExtractionWithExtractor();
 | 
|---|
| 525 |         job2.SetExtractor(job1.GetExtractor());
 | 
|---|
| 526 |         job2.SetPedestals(job1.GetPedestalCam());
 | 
|---|
| 527 |         job2.SetBadPixels(job1.GetBadPixels());
 | 
|---|
| 528 |         job2.SetUseHists(kMoon);
 | 
|---|
| 529 | 
 | 
|---|
| 530 |         if (!job2.ProcessFile())
 | 
|---|
| 531 |         {
 | 
|---|
| 532 |             gLog << err << "Calculation of pedestal from extrtactor (random) failed." << endl << endl;
 | 
|---|
| 533 |             return 2;
 | 
|---|
| 534 |         }
 | 
|---|
| 535 | 
 | 
|---|
| 536 |         if (!job2.GetDisplay())
 | 
|---|
| 537 |         {
 | 
|---|
| 538 |             gLog << warn << "Display closed by user... execution aborted." << endl << endl;
 | 
|---|
| 539 |             return 1;
 | 
|---|
| 540 |         }
 | 
|---|
| 541 | 
 | 
|---|
| 542 |         //
 | 
|---|
| 543 |         // Calculate pedestal and pedestal resolution
 | 
|---|
| 544 |         //
 | 
|---|
| 545 |         MJPedestal job3(Form("MJPedestalY3 #%d", seq.GetSequence()));
 | 
|---|
| 546 |         job3.SetNoStorage();
 | 
|---|
| 547 |         job3.SetSequence(seq);
 | 
|---|
| 548 |         job3.SetEnv(&env);
 | 
|---|
| 549 |         job3.SetEnvDebug(kDebugEnv);
 | 
|---|
| 550 |         job3.SetDisplay(d);
 | 
|---|
| 551 |         job3.SetNoDisplay();
 | 
|---|
| 552 |         job3.SetOverwrite(kOverwrite);
 | 
|---|
| 553 |         job3.SetPathData(kInpathD);
 | 
|---|
| 554 |         job3.SetPathIn(kInpathY);
 | 
|---|
| 555 |         job3.SetDataType(kDataType);
 | 
|---|
| 556 |         // job1.SetPathOut(kOutpathC); // not yet needed
 | 
|---|
| 557 |         // job1.SetPathIn(kInpathC);   // not yet needed
 | 
|---|
| 558 | 
 | 
|---|
| 559 |         job3.SetUseData();
 | 
|---|
| 560 |         job3.SetExtractionWithExtractorRndm();
 | 
|---|
| 561 |         job3.SetExtractor(job1.GetExtractor());
 | 
|---|
| 562 |         job3.SetPedestals(job1.GetPedestalCam());
 | 
|---|
| 563 |         job3.SetBadPixels(job1.GetBadPixels());
 | 
|---|
| 564 |         job3.SetUseHists(kMoon);
 | 
|---|
| 565 | 
 | 
|---|
| 566 |         if (!job3.ProcessFile())
 | 
|---|
| 567 |         {
 | 
|---|
| 568 |             gLog << err << "Calculation of pedestal from extractor failed." << endl << endl;
 | 
|---|
| 569 |             return 2;
 | 
|---|
| 570 |         }
 | 
|---|
| 571 | 
 | 
|---|
| 572 |         if (!job3.GetDisplay())
 | 
|---|
| 573 |         {
 | 
|---|
| 574 |             gLog << warn << "Display closed by user... execution aborted." << endl << endl;
 | 
|---|
| 575 |             return 1;
 | 
|---|
| 576 |         }
 | 
|---|
| 577 | 
 | 
|---|
| 578 |         //
 | 
|---|
| 579 |         // Extract signal and calibrate it
 | 
|---|
| 580 |         //
 | 
|---|
| 581 |         MJCalibrateSignal job4(Form("MJCalibrateSignal #%d", seq.GetSequence()));
 | 
|---|
| 582 |         job4.SetSequence(seq);
 | 
|---|
| 583 |         job4.SetDisplay(d);;
 | 
|---|
| 584 |         job4.SetEnv(&env);
 | 
|---|
| 585 |         job4.SetEnvDebug(kDebugEnv);
 | 
|---|
| 586 |         job4.SetOverwrite(kOverwrite);
 | 
|---|
| 587 |         job4.SetPathIn(kInpathY);
 | 
|---|
| 588 |         job4.SetPathOut(kOutpathY);
 | 
|---|
| 589 |         job4.SetPathData(kInpathD);
 | 
|---|
| 590 |         job4.SetDataType(kDataType);
 | 
|---|
| 591 |         if (kDataType!=MJCalib::kIsUseMC)
 | 
|---|
| 592 |             job4.SetExtractor(job2.GetExtractor());
 | 
|---|
| 593 | 
 | 
|---|
| 594 |         // Where to search for calibration files
 | 
|---|
| 595 |         if (!job4.ProcessFile(job1.GetPedestalCam(), job2.GetPedestalCam(), job3.GetPedestalCam()))
 | 
|---|
| 596 |             return 2;
 | 
|---|
| 597 | 
 | 
|---|
| 598 |         if (kDebugEnv>0)
 | 
|---|
| 599 |             env.PrintUntouched();
 | 
|---|
| 600 | 
 | 
|---|
| 601 |         if (!job4.GetDisplay())
 | 
|---|
| 602 |         {
 | 
|---|
| 603 |             gLog << warn << "Display closed by user... execution aborted." << endl << endl;
 | 
|---|
| 604 |             return 1;
 | 
|---|
| 605 |         }
 | 
|---|
| 606 |     }
 | 
|---|
| 607 | 
 | 
|---|
| 608 |     if (kBatch || kQuit)
 | 
|---|
| 609 |         delete d;
 | 
|---|
| 610 |     else
 | 
|---|
| 611 |     {
 | 
|---|
| 612 |         // From now on each 'Close' means: Terminate the application
 | 
|---|
| 613 |         d->SetBit(MStatusDisplay::kExitLoopOnClose);
 | 
|---|
| 614 | 
 | 
|---|
| 615 |         // Wait until the user decides to exit the application
 | 
|---|
| 616 |         app.Run(kFALSE);
 | 
|---|
| 617 |     }
 | 
|---|
| 618 | 
 | 
|---|
| 619 |     if (TObject::GetObjectStat())
 | 
|---|
| 620 |     {
 | 
|---|
| 621 |         TObject::SetObjectStat(kFALSE);
 | 
|---|
| 622 |         gObjectTable->Print();
 | 
|---|
| 623 |     }
 | 
|---|
| 624 | 
 | 
|---|
| 625 |     return 0;
 | 
|---|
| 626 | }
 | 
|---|
| 627 | 
 | 
|---|