source: trunk/MagicSoft/Mars/callisto.cc@ 7091

Last change on this file since 7091 was 7091, checked in by tbretz, 19 years ago
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File size: 22.0 KB
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1#include <TROOT.h>
2#include <TClass.h>
3#include <TSystem.h>
4#include <TGClient.h>
5#include <TApplication.h>
6#include <TObjectTable.h>
7
8#include "MLog.h"
9#include "MLogManip.h"
10
11#include "MEnv.h"
12#include "MArgs.h"
13#include "MArray.h"
14#include "MDirIter.h"
15
16#include "MStatusDisplay.h"
17
18#include "MSequence.h"
19#include "MJPedestal.h"
20#include "MJCalibration.h"
21#include "MJCalibrateSignal.h"
22#include "MJCalibTest.h"
23
24using namespace std;
25
26static void StartUpMessage()
27{
28 gLog << all << endl;
29
30 // 1 2 3 4 5
31 // 12345678901234567890123456789012345678901234567890
32 gLog << "========================================================" << endl;
33 gLog << " Callisto - MARS V" << MARSVER << endl;
34 gLog << " MARS -- CALibrate LIght Signals and Time Offsets" << endl;
35 gLog << " Compiled with ROOT v" << ROOTVER << " on <" << __DATE__ ">" << endl;
36 gLog << "========================================================" << endl;
37 gLog << endl;
38}
39
40static void Usage()
41{
42 // 1 2 3 4 5 6 7 8
43 // 12345678901234567890123456789012345678901234567890123456789012345678901234567890
44 gLog << all << endl;
45 gLog << "Sorry the usage is:" << endl;
46 gLog << " callisto [-c] [-y] [options] sequence.txt" << endl << endl;
47 gLog << " Arguments:" << endl;
48 gLog << " sequence.txt: Ascii file defining a sequence of runs" << endl;
49 gLog << " For more details see MSequence" << endl;
50 gLog << " Root Options:" << endl;
51 gLog << " -b Batch mode (no graphical output to screen)" << endl<<endl;
52 gLog << " Operation Modes:" << endl;
53 gLog << " -c Calculate the calibration constants" << endl;
54 gLog << " -y Extract and calibrate signal" << endl << endl;
55 gLog << " Data Type (exclusive):" << endl;
56 gLog << " -raw Read input from raw-data" << endl;
57 gLog << " -mc Input root-files are monte carlo files" << endl;
58 gLog << " -root Read input from root-files (merpped) <default>" << endl << endl;
59 gLog << " Options:" << endl;
60 gLog.Usage();
61 gLog << " --debug-env=0 Disable debugging setting resources <default>" << endl;
62 gLog << " --debug-env[=1] Display untouched resources after program execution" << endl;
63 gLog << " --debug-env=2 Display untouched resources after eventloop setup" << endl;
64 gLog << " --debug-env=3 Debug setting resources from resource file" << endl;
65 gLog << " --debug-mem Debug memory usage" << endl << endl;
66 gLog << endl;
67 gLog << " -q Quit when job is finished" << endl;
68 gLog << " -f Force overwrite of existing files" << endl;
69 gLog << " --ind=path Path where to search for the data files" << endl;
70 gLog << " [default=standard path in datacenter]" << endl;
71 gLog << " --iny=path Path where to search for the calibration files" << endl;
72 gLog << " [default=local path or output path of Mode-C]" << endl;
73 gLog << " --outc=path Path to write Mode-C result to [def=local path]" << endl;
74 gLog << " --outy=path Path to write Mode-Y result to [def=local path]" << endl;
75 gLog << " --out=path Path to write the all results to [def=local path]" << endl;
76 gLog << " (overwrites --outc and --outy)" << endl;
77 gLog << " --path=path Path to write the all results to [def=local path]" << endl;
78 gLog << " (overwrites --iny, --outc and --outy)" << endl;
79 gLog << " --print-seq Print Sequence information" << endl;
80 gLog << " --print-files Print Files taken from Sequence" << endl;
81 gLog << " --print-found Print Files found from Sequence" << endl;
82 gLog << " --use-test Apply calibration constants to same calibration" << endl;
83 gLog << " file (for testing, calibration mode only)" << endl;
84 gLog << " --moon Force using pedestal fits instead of calculated RMS" << endl;
85 gLog << " --config=callisto.rc Resource file [default=callisto.rc]" << endl;
86 gLog << endl;
87 gLog << " --version, -V Show startup message with version number" << endl;
88 gLog << " -?, -h, --help This help" << endl << endl;
89 gLog << " Setup of the two jobs run by callisto (MJPedestal and MJCalibration)" << endl;
90 gLog << " can be done with the resource file. See MJPedestal and MJCalibration" << endl;
91 gLog << " especially CheckEnv() for more details. Command line options might" << endl;
92 gLog << " be overwritten by the resource file." << endl << endl;
93 gLog << " If running in Mode-C and Mode-Y --iny= is obsolete, instead --outc=" << endl;
94 gLog << " is used." << endl << endl;
95 gLog << " Using --iny=, --outc=, --outy=, --out= or --path= automatically" << endl;
96 gLog << " enables the corresponmding modes. In this case -c/-y are obsolete." << endl << endl;
97 gLog << "Description:" << endl;
98 gLog << " callisto will calculate pedestals from pedestal-files defined in a" << endl;
99 gLog << " sequence-file. This pedestals are used to calculate the calibration" << endl;
100 gLog << " contants. These constants are stored in a so called calibration-file" << endl;
101 gLog << " together with some datacheck plots which can be viewed using either" << endl;
102 gLog << " showplot or MStatusDisplay in the interpreter. A description of a" << endl;
103 gLog << " sequence-file can be found in the class reference of MSequence." << endl << endl;
104 gLog << "Background:" << endl;
105 gLog << " Callisto is a large, icy, dark-colored, low-density outer moon of" << endl;
106 gLog << " Jupiter that is scarred with impact craters and ejecta. It has a" << endl;
107 gLog << " diameter of about 4800km, the second-largest moon of Jupiter; it is" << endl;
108 gLog << " roughly the size of Mercury. Callisto has the largest-known impact" << endl;
109 gLog << " crater in the Solar System, Valhalla, which has a bright patch 600km" << endl;
110 gLog << " across and rings that go out to almost 3000km. Callisto orbits" << endl;
111 gLog << " Jupiter at a mean distance of 1,883,000km. Its mass is 1.1e23 kg. It" << endl;
112 gLog << " takes Callisto 16.7 days to orbit Jupiter in a synchronous orbit." << endl;
113 gLog << " Jupiter's moon Callisto was discovered independantly by Galileo and" << endl;
114 gLog << " S.Marius in 1610." << endl << endl;
115 gLog << "Example:" << endl;
116 gLog << " callisto -f --outc=mycal/ --outy=mysignal/ --log sequence02345.txt" << endl;
117 gLog << endl;
118}
119
120static void PrintFiles(const MSequence &seq, const TString &kInpathD, Bool_t raw, Bool_t all)
121{
122 const char *prep = all ? "Found" : "Scheduled";
123
124 MDirIter Next1, Next2, Next3;
125 seq.SetupPedRuns(Next1, kInpathD, raw);
126 seq.SetupCalRuns(Next2, kInpathD, raw);
127 seq.SetupDatRuns(Next3, kInpathD, raw);
128
129 gLog << all;
130 gLog.Separator(Form("%s Pedestal Files", prep));
131 Next1.Print(all?"all":"");
132 gLog << endl;
133 gLog.Separator(Form("%s Calibration Files", prep));
134 Next2.Print(all?"all":"");
135 gLog << endl;
136 gLog.Separator(Form("%s Data Files", prep));
137 Next3.Print(all?"all":"");
138 gLog << endl;
139}
140
141int main(int argc, char **argv)
142{
143 //
144 // Evaluate arguments
145 //
146 MArgs arg(argc, argv, kTRUE);
147 gLog.Setup(arg);
148
149 StartUpMessage();
150
151 if (arg.HasOnly("-V") || arg.HasOnly("--version"))
152 return 0;
153
154 if (arg.HasOnly("-?") || arg.HasOnly("-h") || arg.HasOnly("--help"))
155 {
156 Usage();
157 return 2;
158 }
159
160 const TString kConfig = arg.GetStringAndRemove("--config=", "callisto.rc");
161
162 const Bool_t kPrintSeq = arg.HasOnlyAndRemove("--print-seq");
163 const Bool_t kPrintFiles = arg.HasOnlyAndRemove("--print-files");
164 const Bool_t kPrintFound = arg.HasOnlyAndRemove("--print-found");
165 const Bool_t kUseTest = arg.HasOnlyAndRemove("--use-test");
166 const Bool_t kDebugMem = arg.HasOnlyAndRemove("--debug-mem");
167 Bool_t kMoon = arg.HasOnlyAndRemove("--moon");
168 Int_t kDebugEnv = arg.HasOnlyAndRemove("--debug-env") ? 1 : 0;
169 kDebugEnv = arg.GetIntAndRemove("--debug-env=", kDebugEnv);
170
171 const Bool_t kQuit = arg.HasOnlyAndRemove("-q");
172 const Bool_t kBatch = arg.HasOnlyAndRemove("-b");
173 const Bool_t kOverwrite = arg.HasOnlyAndRemove("-f");
174 //const Bool_t kForceExec = arg.HasOnlyAndRemove("-ff");
175
176 const TString kInpathD = arg.GetStringAndRemove("--ind=", "");
177 TString kInpathY = arg.GetStringAndRemove("--iny=", "");
178 TString kOutpathY = arg.GetStringAndRemove("--outy=", "");
179 TString kOutpathC = arg.GetStringAndRemove("--outc=", "");
180 const TString kOutpath = arg.GetStringAndRemove("--out=", "");
181 const TString kPath = arg.GetStringAndRemove("--path=", "");
182
183 Bool_t kModeC = arg.HasOnlyAndRemove("-c");
184 Bool_t kModeY = arg.HasOnlyAndRemove("-y");
185
186 MJCalib::DataType_t kDataType = MJCalib::kIsUseRootData; // root
187 if (arg.HasOnlyAndRemove("-raw"))
188 kDataType = MJCalib::kIsUseRawData; // raw
189 if (arg.HasOnlyAndRemove("-mc"))
190 kDataType = MJCalib::kIsUseMC; // monte carlo
191
192 if (!kInpathY.IsNull() || !kOutpathY.IsNull() || !kOutpath.IsNull() || !kPath.IsNull())
193 kModeY = kTRUE;
194 if (!kOutpathC.IsNull() || !kOutpath.IsNull() || !kPath.IsNull())
195 kModeC = kTRUE;
196
197 if (!kModeC && !kModeY /*&& !kUseTest*/)
198 {
199 gLog << err << "Neither calibration (-c) nor signal extraction (-y) or test-mode (--use-test) specified!" << endl;
200 Usage();
201 return 2;
202 }
203
204 if ((kModeC/* || kUseTest*/) && kOutpathC.IsNull())
205 kOutpathC = ".";
206 if (kModeY)
207 {
208 if (kInpathY.IsNull())
209 kInpathY = ".";
210 if (kOutpathY.IsNull())
211 kOutpathY = ".";
212 }
213 if (!kOutpath.IsNull())
214 {
215 kOutpathC = kOutpath;
216 kOutpathY = kOutpath;
217 }
218 if (!kPath.IsNull())
219 {
220 kOutpathC = kOutpath;
221 kOutpathY = kOutpath;
222 kInpathY = kOutpath;
223 }
224
225 if (kModeC && kModeY)
226 kInpathY = kOutpathC;
227
228 if (arg.GetNumOptions()>0)
229 {
230 gLog << warn << "WARNING - Unknown commandline options..." << endl;
231 arg.Print("options");
232 gLog << endl;
233 return 2;
234 }
235
236 //
237 // check for the right usage of the program
238 //
239 if (arg.GetNumArguments()!=1)
240 {
241 Usage();
242 return 2;
243 }
244
245 //
246 // Setup sequence file and check for its existance
247 //
248 const TString kSequence = arg.GetArgumentStr(0);
249
250 if (gSystem->AccessPathName(kSequence, kFileExists))
251 {
252 gLog << err << "Sorry, sequence file '" << kSequence << "' doesn't exist." << endl;
253 return 2;
254 }
255
256 if (gSystem->AccessPathName(kConfig, kFileExists))
257 {
258 gLog << err << "Sorry, config file '" << kConfig << "' doesn't exist." << endl;
259 return 2;
260 }
261
262 if (kDebugMem)
263 TObject::SetObjectStat(kTRUE);
264
265 //
266 // Setup sequence and check its validity
267 //
268 MSequence seq(kSequence);
269 if (kPrintSeq)
270 {
271 gLog << all;
272 gLog.Separator(kSequence);
273 seq.Print();
274 gLog << endl;
275 }
276 if (!seq.IsValid())
277 {
278 gLog << err << "Sequence read but not valid!" << endl << endl;
279 return 2;
280 }
281
282 //
283 // Process print options
284 //
285 if (kPrintFiles)
286 PrintFiles(seq, kInpathD, kDataType==MJCalib::kIsUseRawData, kFALSE);
287 if (kPrintFound)
288 PrintFiles(seq, kInpathD, kDataType==MJCalib::kIsUseRawData, kTRUE);
289
290 if (seq.HasMoon())
291 kMoon = kTRUE;
292
293
294 /*
295 //
296 // Check for existance of all files
297 //
298 MDirIter iter;
299 const Int_t n0 = seq.SetupAllRuns(iter, kInpathD, "[DPC]");
300 const Int_t n1 = seq.GetNumAllRuns();
301 if (n0 != n1)
302 {
303 if (kForceExec)
304 gLog << warn << "WARNING";
305 else
306 gLog << err << "ERROR";
307 gLog << " - " << n1 << " files in sequence defined, but " << n0 << " found in ";
308 gLog << (kInpathD.IsNull() ? "<defaultpath>" : kInpathD.Data()) << endl;
309 if (!kForceExec)
310 return 2;
311 }
312
313 if (kPrintOnly)
314 return 0;
315 */
316 //
317 // Initialize root
318 //
319 MArray::Class()->IgnoreTObjectStreamer();
320 MParContainer::Class()->IgnoreTObjectStreamer();
321
322 TApplication app("callisto", &argc, argv);
323 if (!gROOT->IsBatch() && !gClient || gROOT->IsBatch() && !kBatch)
324 {
325 gLog << err << "Bombing... maybe your DISPLAY variable is not set correctly!" << endl;
326 return 1;
327 }
328
329 //
330 // Update frequency by default = 1Hz
331 //
332 MStatusDisplay *d = new MStatusDisplay;
333
334 // From now on each 'Exit' means: Terminate the application
335 d->SetBit(MStatusDisplay::kExitLoopOnExit);
336 d->SetTitle(kSequence);
337
338 MEnv env(kConfig);
339 if (kModeC/* || kUseTest*/)
340 {
341 //
342 // Calculate pedestal for pedestal-calculation and calibration
343 //
344 MJPedestal job1(Form("MJPedestalC1 #%d", seq.GetSequence()));
345 job1.SetNoStorage();
346 job1.SetSequence(seq);
347 job1.SetEnv(&env);
348 job1.SetEnvDebug(kDebugEnv);
349 job1.SetDisplay(d);
350 job1.SetOverwrite(kOverwrite);
351 job1.SetPathData(kInpathD);
352 job1.SetDataType(kDataType);
353 job1.SetUseHists(kMoon);
354
355
356 job1.SetExtractionFundamental();
357 // job1.SetPathOut(kOutpathC); // not yet needed
358 // job1.SetPathIn(kInpathC); // not yet needed
359
360 if (!job1.Process())
361 {
362 gLog << err << "Calculation of pedestal failed." << endl << endl;
363 return 2;
364 }
365
366 if (!job1.GetDisplay())
367 {
368 gLog << warn << "Display closed by user... execution aborted." << endl << endl;
369 return 1;
370 }
371
372 //
373 // Calculate pedestal and pedestal resolution
374 //
375 MJPedestal job2(Form("MJPedestalC2 #%d", seq.GetSequence()));
376 job2.SetNoStorage();
377 job2.SetSequence(seq);
378 job2.SetEnv(&env);
379 job2.SetEnvDebug(kDebugEnv);
380 job2.SetDisplay(d);;
381 job2.SetOverwrite(kOverwrite);
382 job2.SetPathData(kInpathD);
383 job2.SetDataType(kDataType);
384 job2.SetUseHists(kMoon);
385 // job1.SetPathOut(kOutpathC); // not yet needed
386 // job1.SetPathIn(kInpathC); // not yet needed
387
388 //job2.SetExtractorResolution();
389 job2.SetExtractionWithExtractorRndm();
390 job2.SetExtractor(job1.GetExtractor());
391 job2.SetPedestals(job1.GetPedestalCam());
392 job2.SetBadPixels(job1.GetBadPixels());
393
394 // Please check the Changelog of 2005/04/20 about further deatils of the next comment
395 //if (job1.GetExtractor().InheritsFrom("MExtractTimeAndCharge"))
396 if (!job2.Process())
397 {
398 gLog << err << "Calculation of pedestal resolution failed." << endl << endl;
399 return 2;
400 }
401
402 if (!job2.GetDisplay())
403 {
404 gLog << warn << "Display closed by user... execution aborted." << endl << endl;
405 return 1;
406 }
407
408 //
409 // Do calibration
410 //
411 MJCalibration job3(Form("MJCalibration #%d", seq.GetSequence()));
412 job3.SetSequence(seq);
413 job3.SetEnv(&env);
414 job3.SetEnvDebug(kDebugEnv);
415 job3.SetDisplay(d);
416 job3.SetOverwrite(kOverwrite);
417 job3.SetPathOut(kOutpathC);
418 job3.SetPathData(kInpathD);
419 job3.SetDataType(kDataType);
420 // job2.SetPathIn(kInpathC); // not yet needed
421
422 job3.SetBadPixels(job2.GetBadPixels());
423 job3.SetExtractor(job2.GetExtractor());
424 job3.SetExtractorCam(job2.GetPedestalCam());
425
426 if (!job3.Process(job1.GetPedestalCam()))
427 {
428 gLog << err << "Calculation of calibration failed." << endl << endl;
429 return 2;
430 }
431
432 if (kDebugEnv>0)
433 env.PrintUntouched();
434
435 if (!job3.GetDisplay())
436 {
437 gLog << warn << "Display closed by user... execution aborted." << endl << endl;
438 return 1;
439 }
440
441 if (kUseTest)
442 {
443 MJCalibTest job4(Form("MJCalibTest #%d", seq.GetSequence()));
444 job4.SetBadPixels(job2.GetBadPixels());
445 job4.SetSequence(seq);
446 job4.SetEnv(&env);
447 job4.SetEnvDebug(kDebugEnv);
448 job4.SetDisplay(d);;
449 job4.SetOverwrite(kOverwrite);
450 job4.SetPathOut(kOutpathC);
451 job4.SetPathData(kInpathD);
452 job4.SetDataType(kDataType);
453
454 if (!job4.Process(job1.GetPedestalCam()))
455 {
456 gLog << err << "Calibration of calibration failed." << endl << endl;
457 return 2;
458 }
459
460 if (kDebugEnv>0)
461 env.PrintUntouched();
462
463 if (!job4.GetDisplay())
464 {
465 gLog << warn << "Display closed by user... execution aborted." << endl << endl;
466 return 1;
467 }
468 }
469 }
470
471 if (kModeY)
472 {
473 d->Reset();
474
475 //
476 // Calculate starting pedestal for data extraction
477 //
478 MJPedestal job1(Form("MJPedestalY1 #%d", seq.GetSequence()));
479 job1.SetNoStorage();
480 job1.SetSequence(seq);
481 job1.SetEnv(&env);
482 job1.SetEnvDebug(kDebugEnv);
483 job1.SetDisplay(d);
484 job1.SetNoDisplay();
485 job1.SetOverwrite(kOverwrite);
486 job1.SetPathData(kInpathD);
487 job1.SetPathIn(kInpathY);
488 job1.SetDataType(kDataType);
489 //job1.SetPathOut(kOutpathY); // not yet needed
490 job1.SetUseData();
491 job1.SetExtractionFundamental();
492 job1.SetUseHists(kMoon);
493
494 if (!job1.Process())
495 {
496 gLog << err << "Calculation of fundamental pedestal failed." << endl << endl;
497 return 2;
498 }
499
500 if (!job1.GetDisplay())
501 {
502 gLog << warn << "Display closed by user... execution aborted." << endl << endl;
503 return 1;
504 }
505
506 //
507 // Calculate pedestal and pedestal resolution
508 //
509 MJPedestal job2(Form("MJPedestalY2 #%d", seq.GetSequence()));
510 job2.SetNoStorage();
511 job2.SetSequence(seq);
512 job2.SetEnv(&env);
513 job2.SetEnvDebug(kDebugEnv);
514 job2.SetDisplay(d);
515 job2.SetNoDisplay();
516 job2.SetOverwrite(kOverwrite);
517 job2.SetPathData(kInpathD);
518 job2.SetPathIn(kInpathY);
519 job2.SetDataType(kDataType);
520 job2.SetPulsePosCheck(kDataType!=MJCalib::kIsUseMC);
521 job2.SetPathOut(kOutpathY); // for updating the extractor
522
523 job2.SetUseData();
524 job2.SetExtractionWithExtractor();
525 job2.SetExtractor(job1.GetExtractor());
526 job2.SetPedestals(job1.GetPedestalCam());
527 job2.SetBadPixels(job1.GetBadPixels());
528 job2.SetUseHists(kMoon);
529
530 // Please check the Changelog of 2005/04/20 about further deatils of the next comment
531 //if (job1.GetExtractor().InheritsFrom("MExtractTimeAndCharge"))
532 if (!job2.Process())
533 {
534 gLog << err << "Calculation of pedestal from extrtactor (random) failed." << endl << endl;
535 return 2;
536 }
537
538 if (!job2.GetDisplay())
539 {
540 gLog << warn << "Display closed by user... execution aborted." << endl << endl;
541 return 1;
542 }
543
544 //
545 // Calculate pedestal and pedestal resolution
546 //
547 MJPedestal job3(Form("MJPedestalY3 #%d", seq.GetSequence()));
548 job3.SetNoStorage();
549 job3.SetSequence(seq);
550 job3.SetEnv(&env);
551 job3.SetEnvDebug(kDebugEnv);
552 job3.SetDisplay(d);
553 job3.SetNoDisplay();
554 job3.SetOverwrite(kOverwrite);
555 job3.SetPathData(kInpathD);
556 job3.SetPathIn(kInpathY);
557 job3.SetDataType(kDataType);
558 // job1.SetPathOut(kOutpathC); // not yet needed
559 // job1.SetPathIn(kInpathC); // not yet needed
560
561 job3.SetUseData();
562 job3.SetExtractionWithExtractorRndm();
563 job3.SetExtractor(job1.GetExtractor());
564 job3.SetPedestals(job1.GetPedestalCam());
565 job3.SetBadPixels(job1.GetBadPixels());
566 job3.SetUseHists(kMoon);
567
568 if (!job3.Process())
569 {
570 gLog << err << "Calculation of pedestal from extractor failed." << endl << endl;
571 return 2;
572 }
573
574 if (!job3.GetDisplay())
575 {
576 gLog << warn << "Display closed by user... execution aborted." << endl << endl;
577 return 1;
578 }
579
580 //
581 // Extract signal and calibrate it
582 //
583 MJCalibrateSignal job4(Form("MJCalibrateSignal #%d", seq.GetSequence()));
584 job4.SetSequence(seq);
585 job4.SetDisplay(d);;
586 job4.SetEnv(&env);
587 job4.SetEnvDebug(kDebugEnv);
588 job4.SetOverwrite(kOverwrite);
589 job4.SetPathIn(kInpathY);
590 job4.SetPathOut(kOutpathY);
591 job4.SetPathData(kInpathD);
592 job4.SetDataType(kDataType);
593 if (kDataType!=MJCalib::kIsUseMC)
594 job4.SetExtractor(job2.GetExtractor());
595
596 // Where to search for calibration files
597 if (!job4.Process(job1.GetPedestalCam(), job2.GetPedestalCam(), job3.GetPedestalCam()))
598 return 2;
599
600 if (kDebugEnv>0)
601 env.PrintUntouched();
602
603 if (!job4.GetDisplay())
604 {
605 gLog << warn << "Display closed by user... execution aborted." << endl << endl;
606 return 1;
607 }
608 }
609
610 if (kBatch || kQuit)
611 delete d;
612 else
613 {
614 // From now on each 'Close' means: Terminate the application
615 d->SetBit(MStatusDisplay::kExitLoopOnClose);
616
617 // Wait until the user decides to exit the application
618 app.Run(kFALSE);
619 }
620
621 if (TObject::GetObjectStat())
622 {
623 TObject::SetObjectStat(kFALSE);
624 gObjectTable->Print();
625 }
626
627 return 0;
628}
629
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