#!/bin/sh # # ======================================================================== # # * # * This file is part of MARS, the MAGIC Analysis and Reconstruction # * Software. It is distributed to you in the hope that it can be a useful # * and timesaving tool in analysing Data of imaging Cerenkov telescopes. # * It is distributed WITHOUT ANY WARRANTY. # * # * Permission to use, copy, modify and distribute this software and its # * documentation for any purpose is hereby granted without fee, # * provided that the above copyright notice appear in all copies and # * that both that copyright notice and this permission notice appear # * in supporting documentation. It is provided "as is" without express # * or implied warranty. # * # # # Author(s): Thomas Bretz 03/2007 # Author(s): Daniela Dorner 02/2008 # Author(s): Stefan Ruegamer 02/2008 # # Copyright: MAGIC Software Development, 2000-2008 # # # ======================================================================== # # This script searches for crashed runs, sequences or datasets in the db # as well as obsolete or missing sequence files and corresponding callisto # and star folders. In the third and fourth check the consistency between # the Run and Sequence DB is checked. # # # TODO # # Spped up with SQL: FIELD(25123, 1, 2, 3, 4, 5, ..., 1000200); # Cross check sequences in Sequence and other databases # added switch which allows to correct for the problems immediatly # unify the checks (especially 1b and 1c) # for the sequences better use 0* instead of 0+ ? source `dirname $0`/sourcefile printprocesslog "INFO starting $0" program=dbchk scriptlog=$runlogpath/$program-$datetime.log date >> $scriptlog 2>&1 getdbsetup alias mymysql='mysql -s -u $us --password=$pw --host=$ho $db' # check for crashed nights, runs, sequences and datasets echo "Checking if something is crashed on nightly basis" >> $scriptlog 2>&1 nights=`echo "SELECT fDate FROM SequenceBuildStatus WHERE isnull(fFailedTime) and not isnull(fStartTime) and adddate(fStartTime, Interval 12 HOUR) < Now()" | mymysql` if [ ! "$nights" = "" ] then printprocesslog "WARN For the following nights something seems to be crashed. Please check manually: $nights" echo "WARN For the following nights something seems to be crashed. Please check manually: $nights" >> $scriptlog 2>&1 else echo " Nothing found." >> $scriptlog 2>&1 fi echo "Checking if something is crashed on run basis" >> $scriptlog 2>&1 cruns=`echo "SELECT fRunNumber FROM RunProcessStatus WHERE isnull(fFailedTime) and not isnull(fStartTime) and adddate(fStartTime, Interval 12 HOUR) < Now()" | mymysql` if [ ! "$cruns" = "" ] then printprocesslog "WARN The following runs seem to be crashed. Please check manually: $cruns" echo "WARN The following runs seem to be crashed. Please check manually: $cruns" >> $scriptlog 2>&1 else echo " Nothing found." >> $scriptlog 2>&1 fi echo "Checking if something is crashed on sequence basis" >> $scriptlog 2>&1 csequences=`echo "SELECT fSequenceFirst FROM SequenceProcessStatus WHERE isnull(fFailedTime) and not isnull(fStartTime) and adddate(fStartTime, Interval 12 HOUR) < Now()" | mymysql` if [ ! "$csequences" = "" ] then printprocesslog "WARN The following sequences seem to be crashed. Please check manually: $csequences" echo "WARN The following sequences seem to be crashed. Please check manually: $csequences" >> $scriptlog 2>&1 else echo " Nothing found." >> $scriptlog 2>&1 fi echo "Checking if something is crashed on dataset basis" >> $scriptlog 2>&1 cdatasets=`echo "SELECT fDataSetNumber FROM DataSetProcessStatus WHERE isnull(fFailedTime) and not isnull(fStartTime) and adddate(fStartTime, Interval 12 HOUR) < Now()" | mymysql` if [ ! "$cdatasets" = "" ] then printprocesslog "WARN The following datasets seem to be crashed. Please check manually: $cdatasets" echo "WARN The following datasets seem to be crashed. Please check manually: $cdatasets" >> $scriptlog 2>&1 else echo " Nothing found." >> $scriptlog 2>&1 fi # CHECK 1 echo "Checking if all sequence files have a corresponding entry in Sequences" >> $scriptlog 2>&1 files=`find $sequpath -type f` for file in $files do sequence=`echo $file | sed -e "s/^.*\/sequence0\+\([0-9]\+\)\.txt$/\1/"` if [ "$sequence" = "" ] || [ "$sequence" = "$file" ] then echo "No sequence file: $file" >> $scriptlog 2>&1 printprocesslog "ERROR No sequence file: $file" continue fi var=`echo SELECT fSequenceFirst FROM Sequences WHERE fSequenceFirst=$sequence | mymysql` if ! [ "$sequence" = "$var" ] then echo "Sequence-File $sequence exist but it is not in Sequences." >> $scriptlog 2>&1 printprocesslog "ERROR Sequence-File $sequence exists, but it is not in Sequences (DB)." continue fi done # CHECK 1b (callisto) echo "Checking if all sequences in ${datapath}/callisto have a corresponding sequence in Sequence" >> $scriptlog 2>&1 dirs=`find ${datapath}/callisto -mindepth 2 -maxdepth 2 -type d` for dir in $dirs do sequence=`echo $dir | sed -e "s/^.*\/0\+\([0-9]\+\)$/\1/"` if [ "$sequence" = "" ] || [ "$sequence" = "$dir" ] then echo "Invalid directory: $dir" >> $scriptlog 2>&1 printprocesslog "ERROR Invalid directory: $dir" continue fi var=`echo SELECT fSequenceFirst FROM Sequences WHERE fSequenceFirst=$sequence | mymysql` if ! [ "$sequence" = "$var" ] then echo "$dir exists but no corresponding sequence in Sequences." >> $scriptlog 2>&1 printprocesslog "ERROR $dir exists, but no corresponding sequence in Sequences (DB)." continue fi done # CHECK 1c (star) echo "Checking if all sequences in ${datapath}/star have a corresponding sequence in Sequence" >> $scriptlog 2>&1 dirs=`find ${datapath}/star -mindepth 2 -type d` for dir in $dirs do sequence=`echo $dir | sed -e "s/^.*\/0\+\([0-9]\+\)$/\1/"` if [ "$sequence" = "" ] || [ "$sequence" = "$dir" ] then echo "Invalid directory: $dir" >> $scriptlog 2>&1 printprocesslog "ERROR Invalid directory: $dir" continue fi var=`echo SELECT fSequenceFirst FROM Sequences WHERE fSequenceFirst=$sequence | mymysql` if ! [ "$sequence" = "$var" ] then echo "$dir exists but no corresponding sequence in Sequences." >> $scriptlog 2>&1 printprocesslog "ERROR $dir exists, but no corresponding sequence in Sequences (DB)." continue fi done # CHECK 2 echo "Checking if all sequences in Sequences have a corresponding sequence files" >> $scriptlog 2>&1 sequences=`echo SELECT fSequenceFirst FROM Sequences left join SequenceProcessStatus using (fSequenceFirst,fTelescopeNumber) where not isnull(fSequenceFileWritten) | mymysql` for sequence in $sequences do var=`find $sequpath -type f -regex .*/sequence0+${sequence}\.txt$` if [ "$var" = "" ] then echo "Sequence-File for $sequence not found but in db." >> $scriptlog 2>&1 printprocesslog "ERROR Sequence-File for $sequence not found but in DB." fi done # CHECK 3 echo "Checking if all sequences from Sequences exist RunData" >> $scriptlog 2>&1 sequences=`echo SELECT fSequenceFirst FROM Sequences GROUP BY fSequenceFirst | mymysql` for sequence in $sequences do res=`echo SELECT fSequenceFirst FROM RunData WHERE fSequenceFirst=$sequence GROUP BY fSequenceFirst | mymysql` if ! [ "$sequence" = "$res" ] then echo "Sequence $sequence exists in Sequences but not in RunData." >> $scriptlog 2>&1 printprocesslog "Sequence $sequence exists in Sequences but not in RunData (DB)." continue fi done # CHECK 4 echo "Checking if all sequences from RunData exist in Sequences" >> $scriptlog 2>&1 sequences=`echo SELECT fSequenceFirst FROM RunData WHERE not fSequenceFirst=0 GROUP BY fSequenceFirst | mymysql` for sequence in $sequences do var=`echo SELECT fSequenceFirst FROM Sequences WHERE fSequenceFirst=$sequence | mymysql` if ! [ "$sequence" = "$var" ] then echo "Sequence $sequence exists in RunData but not in Sequences." >> $scriptlog 2>&1 printprocesslog "Sequence $sequence exists in RunData but not in Sequences (DB)." continue fi done # CHECK 5 echo "Checking if all sequences from RunData exist in SequenceProcessStatus" >> $scriptlog 2>&1 sequences=`echo SELECT fSequenceFirst FROM RunData WHERE not fSequenceFirst=0 GROUP BY fSequenceFirst | mymysql` for sequence in $sequences do var=`echo SELECT fSequenceFirst FROM SequenceProcessStatus WHERE fSequenceFirst=$sequence | mymysql` if ! [ "$sequence" = "$var" ] then echo "Sequence $sequence exists in RunData but not in SequenceProcessStatus." >> $scriptlog 2>&1 printprocesslog "Sequence $sequence exists in RunData but not in SequenceProcessStatus (DB)." continue fi done finish >> $scriptlog 2>&1