1 | #!/bin/sh |
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2 | # |
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3 | # ======================================================================== |
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4 | # |
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5 | # * |
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6 | # * This file is part of MARS, the MAGIC Analysis and Reconstruction |
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7 | # * Software. It is distributed to you in the hope that it can be a useful |
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8 | # * and timesaving tool in analysing Data of imaging Cerenkov telescopes. |
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9 | # * It is distributed WITHOUT ANY WARRANTY. |
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10 | # * |
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11 | # * Permission to use, copy, modify and distribute this software and its |
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12 | # * documentation for any purpose is hereby granted without fee, |
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13 | # * provided that the above copyright notice appear in all copies and |
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14 | # * that both that copyright notice and this permission notice appear |
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15 | # * in supporting documentation. It is provided "as is" without express |
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16 | # * or implied warranty. |
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17 | # * |
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18 | # |
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19 | # |
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20 | # Author(s): Daniela Dorner 05/2006 <mailto:dorner@astro.uni-wuerzburg.de> |
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21 | # |
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22 | # Copyright: MAGIC Software Development, 2000-2009 |
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23 | # |
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24 | # |
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25 | # ======================================================================== |
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26 | # |
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27 | # This a script, which launches other scripts (all scripts, that are run |
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28 | # on primary basis |
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29 | # |
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30 | |
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31 | source `dirname $0`/sourcefile |
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32 | printprocesslog "INFO starting $0" |
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33 | |
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34 | set -C |
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35 | |
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36 | # function to continue in loop and go to next script |
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37 | function nextscript() |
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38 | { |
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39 | echo `date +%F\ %T`" sleeping \$$1 = $sleeptime seconds... " >> $jmscriptlog 2>&1 |
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40 | sleep $2 |
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41 | echo "" >> $jmscriptlog 2>&1 |
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42 | continue |
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43 | } |
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44 | |
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45 | echo "" >> $jmscriptlog 2>&1 |
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46 | echo "" >> $jmscriptlog 2>&1 |
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47 | echo -n `date +%F\ %T`" starting jobmanager for setup "$AUTOMATIONSETUP >> $jmscriptlog 2>&1 |
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48 | |
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49 | # choose commands according to queueing system (defined in setup) |
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50 | case $queuesys in |
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51 | sge) echo " on queuing system 'sun grid engine'" >> $jmscriptlog 2>&1 |
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52 | # (-hard) -l hostname=compute-* |
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53 | # for qstat this returns the jobs running on that node + all jobs in the queue |
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54 | alias 'queuesubmit'='/opt/gridengine/bin/lx26-amd64/qsub -b y -v AUTOMATIONSETUP=$AUTOMATIONSETUP -e `echo $runlogpath`/error-`echo $date`.log -o `echo $runlogpath`/log-`echo $date`.log `echo $noderequirementsub` `echo $scriptspath`/`echo ${scripts[$i]}` ' |
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55 | # alias 'queuesubmit'='/opt/gridengine/bin/lx26-amd64/qsub -b y -v AUTOMATIONSETUP=$AUTOMATIONSETUP -e `echo $runlogpath`/error-`echo $date`.log -o `echo $runlogpath`/log-`echo $date`.log `echo $scriptspath`/`echo ${scripts[$i]}` ' |
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56 | # alias 'queuesubmit'='/opt/gridengine/bin/lx26-amd64/qsub -sc runlogpath=`echo $runlogpath` -sc date=`echo $date` -sc scriptspath=`echo $scriptspath` -sc script=`echo ${scripts[$i]}` `echo $scriptspath`/job.sge ' |
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57 | # FIXME: get complete scriptname (including command line option), needed for runstereo |
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58 | alias 'checkqueue'="/opt/gridengine/bin/lx26-amd64/qstat \`echo \$noderequirementstat\` | awk ' { print \"Owner\"\$4\" \" \$3\"Jobstatus\"\$5 } '" |
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59 | break |
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60 | ;; |
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61 | condor) echo " on queuing system 'condor'" >> $jmscriptlog 2>&1 |
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62 | alias 'queuesubmit'='/usr/local/bin/condor_submit -a path=`echo $scriptspath` -a prog=`echo ${scripts[$i]}` -a date=`echo $date` -a dir=`echo $runlogpath` -a automationsetup=$AUTOMATIONSETUP `echo $scriptspath`/run.condor' |
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63 | alias 'checkqueue'='/usr/local/bin/condor_q -global -format "Owner%s " Owner -format "%s" CMD -format "Jobstatus%s\n" Jobstatus ' |
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64 | break |
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65 | ;; |
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66 | *) echo "" >> $jmscriptlog 2>&1 |
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67 | finish >> $jmscriptlog 2>&1 |
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68 | ;; |
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69 | esac |
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70 | |
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71 | echo "" >> $jmscriptlog 2>&1 |
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72 | |
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73 | prev=$max |
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74 | user=`whoami` |
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75 | currentnode=$minnode |
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76 | numevaluated=0 |
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77 | # endless loop |
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78 | notcount=0 |
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79 | nothingtodocount=0 |
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80 | nothingtodosleeptime=0 |
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81 | errorsleeptime=$errorsleeptimedefault |
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82 | while (( $notcount < 100 )) |
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83 | do |
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84 | for (( i=0 ; i < ${#scripts[@]} ; i++ )) |
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85 | do |
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86 | source `dirname $0`/sourcefile |
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87 | echo `date +%F\ %T`" Evaluating processing status for script '${scripts[$i]}'" >> $jmscriptlog 2>&1 |
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88 | |
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89 | # check if there's something to do |
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90 | column=${scriptscolname[$i]} |
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91 | getstepinfo |
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92 | if [ "$noderestricted" = "yes" ] |
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93 | then |
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94 | # get number of next node |
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95 | if [ $numevaluated -ge $numrestrictedscripts ] |
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96 | then |
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97 | currentnode=`echo $currentnode + 1 | bc -l` |
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98 | numevaluated=1 |
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99 | else |
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100 | numevaluated=`echo $numevaluated + 1 | bc -l` |
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101 | fi |
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102 | if [ $currentnode -gt $maxnode ] |
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103 | then |
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104 | currentnode=$minnode |
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105 | fi |
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106 | # check if node is excluded |
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107 | for excludednode in ${excludednodes[@]} |
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108 | do |
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109 | if [ $currentnode -eq $excludednode ] |
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110 | then |
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111 | echo `date +%F\ %T`" Node compute-0-$currentnode is currently excluded." >> $jmscriptlog 2>&1 |
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112 | continue 2 |
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113 | fi |
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114 | done |
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115 | # define requirement for submission |
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116 | # FIXME: currently only for sge at isdc |
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117 | echo `date +%F\ %T`" Checking for node $currentnode. " >> $jmscriptlog 2>&1 |
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118 | noderequirementsub=" -hard -l hostname=compute-0-${currentnode}" |
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119 | noderequirementstat=" -l hostname=compute-0-${currentnode}" |
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120 | getstatus $currentnode >> $jmscriptlog 2>&1 |
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121 | else |
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122 | noderequirementsub="" |
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123 | noderequirementstat="" |
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124 | getstatus >> $jmscriptlog 2>&1 |
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125 | fi |
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126 | |
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127 | # check number of processes to be done |
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128 | echo `date +%F\ %T`" Database: $numproc ${scripts[$i]} still to be done (incl. idle jobs) [DB/table/column $db/$table/$column]" >> $jmscriptlog 2>&1 |
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129 | if [ "$numproc" = "0" ] |
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130 | then |
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131 | prev=0 |
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132 | nothingtodocount=`expr $nothingtodocount + 1` |
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133 | if [ $nothingtodocount -lt ${#scripts[@]} ] |
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134 | then |
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135 | nextscript 0 0 |
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136 | else |
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137 | if [ $nothingtodosleeptime -lt $sleeptimelimit ] |
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138 | then |
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139 | nothingtodosleeptime=`echo " $nothingtodocount * $sleeptime " | bc` |
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140 | fi |
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141 | nextscript nothingtodosleeptime $nothingtodosleeptime |
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142 | fi |
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143 | else |
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144 | nothingtodocount=0 |
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145 | nothingtodosleeptime=0 |
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146 | fi |
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147 | |
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148 | # get processes in queue |
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149 | q=(`checkqueue 2>&1 `) |
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150 | if echo $q | egrep \(Error\|failed\) |
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151 | then |
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152 | echo `date +%F\ %T`" WARN checking query ($queuesys) failed" >> $jmscriptlog 2>&1 |
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153 | printprocesslog "WARN checking query ($queuesys) failed" |
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154 | echo `date +%F\ %T`" WARN checking query ($queuesys) failed" >> $jmerrorlog |
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155 | nextscript sleeptime $sleeptime |
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156 | fi |
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157 | # FIXME: sge cuts scriptname to 8 digits in qstat |
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158 | # get processes of user in queue |
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159 | q1=( `echo ${q[@]} | egrep -o "Owner$user"`) |
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160 | queued=${#q1[@]} |
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161 | # get scripts in queue |
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162 | q2=( `echo ${q[@]} | egrep -o "${scripts[$i]}"`) |
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163 | queuedscript=${#q2[@]} |
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164 | # get running scripts |
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165 | q3=( `echo ${q[@]} | egrep -o \("${scripts[$i]}"Jobstatus2\|"${scripts[$i]}"Jobstatusr\)` ) |
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166 | runningscript=${#q3[@]} |
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167 | stillinqueue=`echo $queuedscript - $runningscript | bc ` |
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168 | |
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169 | #get total number of allowed process for current time |
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170 | hour=`date +%k` |
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171 | if [ ${pnototal[$hour]} -lt $totalmax ] |
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172 | then |
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173 | totalpno=${pnototal[$hour]} |
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174 | else |
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175 | totalpno=$totalmax |
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176 | fi |
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177 | |
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178 | #choose array according to the day of the week |
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179 | dayofweek=`date +%u` |
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180 | case $dayofweek in |
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181 | 0 | 6) pnos=( ${pnoswe[@]} ) ;; |
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182 | *) pnos=( ${pnosweek[@]} ) ;; |
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183 | esac |
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184 | # get number of allowed scripts for current time |
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185 | num=`echo "((( $i + 1 ) * 24 ) + ( $hour + 1 ) ) - 24 - 1 " | bc ` |
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186 | pnoscript=${pnos[$num]} |
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187 | # if there was nothing to do for previous script, more scripts can be allowed |
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188 | if [ $prev -eq 0 ] |
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189 | then |
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190 | echo `date +%F\ %T`" \$prev=0 => resetting \$pnoscript from $pnoscript to $max [\$max]" >> $jmscriptlog 2>&1 |
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191 | pnoscript=$max |
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192 | fi |
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193 | echo `date +%F\ %T`" queue for user '$user': total: $queued queued jobs [allowed \$totalpno = $totalpno]" >> $jmscriptlog 2>&1 |
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194 | echo `date +%F\ %T`" queue for user '$user': ${scripts[$i]}: $queuedscript queued, $runningscript running, $stillinqueue idle [allowed \$pnoscript = $pnoscript]" >> $jmscriptlog 2>&1 |
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195 | |
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196 | # continue if there are already enough processes or scripts in the queue |
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197 | if [ "$queued" -ge "$totalpno" ] || [ "$queuedscript" -ge "$pnoscript" ] |
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198 | then |
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199 | nextscript sleeptime $sleeptime |
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200 | fi |
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201 | # continue if the number of script is the queue is larger (or equal) than the number which still has to be done |
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202 | if [ $numproc -le $stillinqueue ] |
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203 | then |
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204 | echo `date +%F\ %T`" \$numproc ($numproc) < \$stillinqueue ($stillinqueue) " >> $jmscriptlog 2>&1 |
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205 | nextscript sleeptime $sleeptime |
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206 | fi |
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207 | |
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208 | # reset prev |
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209 | prev=$max |
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210 | |
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211 | # submit 1 script to queuing system |
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212 | date=`date +%Y-%m-%d` |
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213 | echo `date +%F\ %T`" committing 1 ${scripts[$i]} to $queuesys" >> $jmscriptlog 2>&1 |
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214 | if ! queuesubmit 2>> $jmerrorlog |
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215 | then |
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216 | echo `date`" WARN submitting job ($queuesys) failed" >> $jmerrorlog |
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217 | echo `date +%F\ %T`" WARN $queuesys is not working -> sleeping $errorsleeptime [\$errorsleeptime]" >> $jmscriptlog 2>&1 |
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218 | printprocesslog "WARN submitting ${scripts[$i]} ($queuesys) failed" |
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219 | if [ $errorsleeptime -lt $sleeptimelimit ] |
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220 | then |
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221 | errorsleeptime=`echo " $errorsleeptime + $errorsleeptimedefault " | bc` |
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222 | fi |
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223 | nextscript errorsleeptime $errorsleeptime |
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224 | else |
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225 | errorsleeptime=$errorsleeptimedefault |
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226 | fi |
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227 | nextscript sleeptime $sleeptime |
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228 | done |
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229 | done |
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230 | |
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