1 | #!/bin/sh
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2 | #
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3 | # ========================================================================
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4 | #
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5 | # *
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6 | # * This file is part of MARS, the MAGIC Analysis and Reconstruction
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7 | # * Software. It is distributed to you in the hope that it can be a useful
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8 | # * and timesaving tool in analysing Data of imaging Cerenkov telescopes.
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9 | # * It is distributed WITHOUT ANY WARRANTY.
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10 | # *
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11 | # * Permission to use, copy, modify and distribute this software and its
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12 | # * documentation for any purpose is hereby granted without fee,
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13 | # * provided that the above copyright notice appear in all copies and
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14 | # * that both that copyright notice and this permission notice appear
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15 | # * in supporting documentation. It is provided "as is" without express
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16 | # * or implied warranty.
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17 | # *
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18 | #
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19 | #
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20 | # Author(s): Daniela Dorner 08/2004 <mailto:dorner@astro.uni-wuerzburg.de>
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21 | #
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22 | # Copyright: MAGIC Software Development, 2000-2006
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23 | #
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24 | #
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25 | # ========================================================================
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26 | #
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27 | # This script is launching star for sequence.
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28 | #
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29 | # In the case of star only one sequence is processed. Despite of
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30 | # that the structure of the script is such, that also more sequences could
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31 | # be processed. The restriction to one sequence has been made, as star
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32 | # takes some time. There's one todo file per sequence.
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33 | # First the script searches for a todo file. Then star is run for the
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34 | # sequence from this todo file.
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35 | #
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36 | # the star.rc files are taken from the mars directory
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37 | #
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38 |
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39 | program=star
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40 | source /home/$USER/Mars/datacenter/scripts/sourcefile
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41 |
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42 | set -C
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43 |
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44 | table=SequenceProcessStatus
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45 | column=fStar
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46 | #pno=500 # number of processes, i.e. number of todo-files
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47 |
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48 | todofile=$listpath/ToDo-$table-$column
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49 | lockfile=$lockpath/lock-getting-$program-list.txt
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50 |
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51 | scriptlogpath=$logpath/run/$program/`date +%Y/%m/%d`
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52 | makedir $scriptlogpath
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53 | scriptlog=$scriptlogpath/run$program-$datetime.log
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54 |
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55 | date >> $scriptlog 2>&1
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56 |
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57 | cd $mars
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58 |
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59 | # finding todo file
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60 | echo "checking if other todo-files are there" >> $scriptlog 2>&1
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61 | if ls $todofile-[1-9]*.txt >> $scriptlog 2>&1
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62 | then
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63 | echo "other file(s) on disk " >> $scriptlog 2>&1
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64 | echo " -> choose one file and start calculation of image parameter" >> $scriptlog 2>&1
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65 | else
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66 | # check if getting of list is already running
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67 | checklock "getting list of" >> $scriptlog 2>&1
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68 | # get todo list
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69 | getdolist >> $scriptlog 2>&1
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70 | rm -v $lockfile >> $scriptlog 2>&1
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71 | fi
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72 |
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73 | # choosing todo file
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74 | nr=bla
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75 | echo "finding the right todo-file" >> $scriptlog 2>&1
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76 | todofiles=`ls -r $listpath/ToDo-$table-$column-*`
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77 |
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78 | for todofile in ${todofiles[@]}
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79 | do
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80 | if ! ls $todofile >> $scriptlog 2>&1
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81 | then
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82 | echo "file is not on disk -> continue" >> $scriptlog 2>&1
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83 | continue
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84 | fi
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85 | lockfile=`echo $todofile | sed -e 's/lists/locks/' -e 's/ToDo/lock/'`
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86 | date > $lockfile >> $scriptlog 2>&1
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87 | checklock=$?
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88 | case $checklock in
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89 | 0) echo "checklock=$checklock -> setting number" >> $scriptlog 2>&1
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90 | nr=${i}
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91 | break;;
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92 | 1) echo "checklock=$checklock -> file exists -> continue" >> $scriptlog 2>&1;;
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93 | *) echo "checklock=$checklock -> something went completely wrong" >> $scriptlog 2>&1;;
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94 | esac
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95 | done
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96 |
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97 | case $nr in
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98 | bla) echo "everything is beeing processed -> exit" >> $scriptlog 2>&1
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99 | date >> $scriptlog 2>&1
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100 | exit;;
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101 | 12345678) echo "process nr: "$nr >> $scriptlog 2>&1;;
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102 | esac
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103 |
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104 | # retrieve sequence from todo file
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105 | sequences=(`cat $todofile`)
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106 | if [ "$sequences" = "" ]
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107 | then
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108 | echo "nothing to do -> exit" >> $scriptlog 2>&1
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109 | finish >> $scriptlog 2>&1
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110 | fi
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111 |
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112 | # run star for sequence
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113 | echo "sequences: "${sequences[@]} >> $scriptlog 2>&1
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114 | for sequence in ${sequences[@]}
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115 | do
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116 | no=`printf %08d $sequence | cut -c 0-4`
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117 | no2=`printf %08d $sequence`
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118 | var1=$no
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119 | var2=$no2
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120 | outpath="$datapath/$program/$no/$no2"
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121 | inpath=`echo $outpath | sed -e 's/star/callisto/'`
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122 | echo "inpath: "$inpath >> $scriptlog 2>&1
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123 | echo "outpath: "$outpath >> $scriptlog 2>&1
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124 | makedir $outpath >> $scriptlog 2>&1
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125 |
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126 | sequfile="$sequpath/$no/sequence$no2.txt"
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127 | echo "sequfile: "$sequfile >> $scriptlog 2>&1
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128 |
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129 | echo "run $program..." >> $scriptlog 2>&1
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130 | setstatus "start" >> $scriptlog 2>&1
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131 |
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132 | ./star -b -q -v4 -f --log=$outpath/$program$no2.log --html=$outpath/$program$no2.html --ind=$inpath --out=$outpath $sequfile 2>> $scriptlog> /dev/null
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133 | check1=$?
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134 |
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135 | case $check1 in
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136 | 0) echo "check1=$check1 -> everything ok " >> $scriptlog 2>&1;;
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137 | *) echo "check1=$check1 -> ERROR -> step has to be repeated" >> $scriptlog 2>&1
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138 | com=$Fstar
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139 | check=$check1
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140 | ;;
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141 | esac
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142 | echo "inserting the status for $program for sequence $sequence into the db" >> $scriptlog 2>&1
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143 | setstatus "stop" >> $scriptlog 2>&1
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144 | done
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145 |
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146 | finish >> $scriptlog 2>&1
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147 |
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