1 | #!/bin/sh |
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2 | # |
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3 | # ======================================================================== |
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4 | # |
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5 | # * |
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6 | # * This file is part of MARS, the MAGIC Analysis and Reconstruction |
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7 | # * Software. It is distributed to you in the hope that it can be a useful |
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8 | # * and timesaving tool in analysing Data of imaging Cerenkov telescopes. |
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9 | # * It is distributed WITHOUT ANY WARRANTY. |
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10 | # * |
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11 | # * Permission to use, copy, modify and distribute this software and its |
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12 | # * documentation for any purpose is hereby granted without fee, |
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13 | # * provided that the above copyright notice appear in all copies and |
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14 | # * that both that copyright notice and this permission notice appear |
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15 | # * in supporting documentation. It is provided "as is" without express |
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16 | # * or implied warranty. |
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17 | # * |
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18 | # |
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19 | # |
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20 | # Author(s): Daniela Dorner 05/2005 <mailto:dorner@astro.uni-wuerzburg.de> |
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21 | # |
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22 | # Copyright: MAGIC Software Development, 2000-2010 |
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23 | # |
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24 | # |
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25 | # ======================================================================== |
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26 | # |
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27 | # This a resource file for the scripts, in which the standard paths and |
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28 | # functions, which are needed more often are stored. |
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29 | # Only constant variables are stored here, changing variables are stored |
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30 | # in datacenter/scripts/setup |
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31 | # |
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32 | |
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33 | # check if script has been started with absolute path |
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34 | if ! dirname $0 | grep -E '^/' >/dev/null 2>&1 |
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35 | then |
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36 | echo "Please start your script with an absolute path." |
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37 | exit |
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38 | fi |
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39 | |
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40 | if [ "$AUTOMATIONSETUP" = "" ] |
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41 | then |
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42 | echo "Please set the environment variable \$AUTOMATIONSETUP." |
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43 | exit |
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44 | fi |
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45 | |
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46 | # possible solution for $0 problem: |
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47 | # ${BASH_SOURCE[0]} |
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48 | # but has to be checked and tested more carefully |
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49 | # should solve at least problem with login-shell and with source |
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50 | source `dirname $0`/setup.$AUTOMATIONSETUP |
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51 | |
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52 | datetime=`date +%F-%H-%M-%S` |
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53 | |
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54 | |
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55 | # function to make sure that a directory is made |
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56 | function makedir() |
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57 | { |
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58 | if [ ! -d $@ ] |
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59 | then |
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60 | mkdir -pv $@ |
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61 | if [ ! -d $@ ] |
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62 | then |
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63 | if ! [ "$processlog" = "" ] |
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64 | then |
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65 | echo `date +%F\ %T`" "`whoami`"@"$HOSTNAME" "`basename $0`"["$$"] ERROR could not make dir "$@ >> $processlog |
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66 | else |
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67 | echo "could not make dir "$@ |
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68 | fi |
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69 | if ls $lockfile >/dev/null 2>&1 |
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70 | then |
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71 | rm -v $lockfile |
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72 | fi |
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73 | exit |
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74 | fi |
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75 | fi |
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76 | } |
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77 | |
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78 | # logging paths for runlogs and processlog |
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79 | runlogpath=$logpath/run/`date +%Y/%m/%d` |
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80 | processlogpath=$logpath/processlog |
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81 | makedir $runlogpath |
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82 | makedir $processlogpath |
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83 | processlog=$processlogpath/process`date +%F`.log |
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84 | |
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85 | makedir $lockpath |
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86 | |
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87 | |
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88 | # function to provide proper logging in a single logfile ($processlog) |
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89 | function printprocesslog |
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90 | { |
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91 | makedir $processlogpath |
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92 | echo `date +%F\ %T`" "`whoami`"@"$HOSTNAME" "`basename $0`"["$$"] "$@ >> $processlog |
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93 | } |
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94 | |
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95 | # function to exit a script properly |
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96 | function finish() |
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97 | { |
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98 | if ! [ "$lockfile" = "" ] && ls $lockfile >/dev/null 2>&1 |
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99 | then |
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100 | printprocesslog "INFO " `rm -v $lockfile` |
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101 | fi |
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102 | printprocesslog "INFO finished $0" |
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103 | exit |
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104 | } |
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105 | |
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106 | |
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107 | # set checkvalue to ok at the beginning of the scripts |
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108 | check="ok" |
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109 | |
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110 | #failed codes |
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111 | #sequence build status |
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112 | Fbuildsequ=1 |
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113 | Fdoexcl=2 |
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114 | #run process status |
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115 | Ftimecorr=3 |
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116 | Ffillraw=4 |
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117 | Fsinope=5 |
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118 | Ffillsinope=6 |
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119 | Fresetexcl=7 |
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120 | #sequence process status |
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121 | Fwritesequfile=8 |
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122 | Ffilesavail=9 |
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123 | Fnoccfile=10 |
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124 | Fnocacofile=11 |
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125 | Fmerppcc=12 |
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126 | Fmerppcaco=13 |
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127 | Fcallisto=14 |
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128 | Ffillcalib=15 |
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129 | Ffillsignal=16 |
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130 | Fstar=17 |
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131 | Ffillstar=18 |
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132 | #dataset process status |
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133 | Fwritedatasetfile=19 |
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134 | Fstardone=20 |
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135 | Fganymed=21 |
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136 | Ffillganymed=22 |
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137 | #again run process status |
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138 | FCompmux=26 |
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139 | Fdowebplots=27 |
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140 | #again mc run process status |
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141 | Fmccallisto=28 |
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142 | Ffillmccalib=29 |
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143 | Ffillmcsignal=30 |
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144 | Fmcstar=31 |
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145 | Ffillmcstar=32 |
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146 | Fcorsikasimtel=33 |
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147 | Fchimp=34 |
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148 | Fchimpcp=35 |
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149 | Fctastar=36 |
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150 | Fctastarcp=37 |
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151 | FctastereoA=38 |
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152 | FctastereoB=39 |
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153 | FctastereoC=40 |
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154 | FctastereoD=41 |
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155 | FctastereoE=42 |
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156 | FctastereoF=43 |
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157 | FctastereoG=44 |
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158 | FctastereoH=45 |
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159 | Fctastereocp=46 |
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160 | |
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161 | # setup for jobmanager: |
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162 | # log files (can't be defined in script itself, as script can run longer |
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163 | # than one day |
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164 | jmerrorlog=$runlogpath/jobmanager-error`date +%F`.log |
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165 | jmscriptlog=$runlogpath/jobmanager`date +%F`.log |
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166 | |
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167 | # check if rc-files are available |
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168 | if ! ls $steps >/dev/null |
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169 | then |
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170 | echo "Can't find steps.rc ($steps)" |
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171 | finish |
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172 | fi |
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173 | if ! ls $sqlrc >/dev/null |
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174 | then |
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175 | echo "Can't find sql.rc ($sqlrc)" |
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176 | finish |
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177 | fi |
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178 | |
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179 | # resetting values |
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180 | pno=0 |
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181 | totalpno=0 |
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182 | running=0 |
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183 | queued=0 |
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184 | runningscript=0 |
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185 | queuedscript=0 |
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186 | stillinqueue=0 |
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187 | |
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188 | |
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189 | # alias (we cannot check the beginning of the line due to |
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190 | # color codes in filldotraw.C) |
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191 | alias 'intgrep'='grep -E -o \\\(int\\\)[0-9]+$ | grep -E -o [0-9]+' |
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192 | |
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193 | |
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194 | # in the following the functions, which are needed by several scripts, are |
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195 | # defined |
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196 | |
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197 | # function to check if a process is already locked |
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198 | # command line option can be used to execute something, e.g. 'continue' |
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199 | function checklock() |
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200 | { |
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201 | if ! echo `date +%F\ %T`" "`whoami`"@"$HOSTNAME" "`basename $0`"["$$"] "`uname -a` > $lockfile 2>/dev/null |
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202 | then |
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203 | printprocesslog "WARN lockfile $lockfile exists" |
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204 | $@ |
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205 | exit |
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206 | else |
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207 | printprocesslog "INFO created lockfile $lockfile" |
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208 | fi |
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209 | } |
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210 | |
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211 | # print the current status values |
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212 | function printstatusvalues() |
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213 | { |
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214 | echo "the current values are:" |
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215 | echo " starttime=$starttime" |
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216 | echo " stoptime=$stoptime" |
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217 | echo " returncode=$returncode" |
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218 | echo "-- check: -$check-" |
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219 | echo "" |
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220 | } |
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221 | |
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222 | # get the db-setup from the sql.rc |
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223 | function getdbsetup() |
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224 | { |
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225 | db=`grep Database $sqlrc | grep -v '#' | sed -e 's/Database: //' -e 's/ //g'` |
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226 | pw=`grep Password $sqlrc | grep -v '#' | sed -e 's/Password: //' -e 's/ //g'` |
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227 | us=`grep User $sqlrc | grep -v '#' | sed -e 's/User: //' -e 's/ //g'` |
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228 | ho=`grep URL $sqlrc | grep -v '#' | sed -e 's/ //g' -e 's/URL:mysql:\/\///'` |
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229 | # echo "setup: " |
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230 | # echo " db: "$db |
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231 | # echo " pw: "$pw |
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232 | # echo " us: "$us |
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233 | # echo " ho: "$ho |
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234 | } |
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235 | |
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236 | # function to get the needed information from the dependencies-file steps.rc |
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237 | function getstepinfo() |
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238 | { |
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239 | getdbsetup |
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240 | needs=`grep "$step[.]Needs:" $steps | grep -v '#' | sed -e "s/$step[.]Needs://"` |
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241 | noderestricted=`grep "$step[.]NodeRestricted:" $steps | grep -v '#' | sed -e "s/$step[.]NodeRestricted://" -e 's/ //g'` |
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242 | prims=( `grep "$step[.]Primaries:" $steps | grep -v '#' | sed -e "s/$step[.]Primaries://"` ) |
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243 | # echo " needs: $needs" |
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244 | # echo " noderestricted: $noderestricted" |
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245 | # echo " prims: ${prims[@]}" |
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246 | } |
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247 | |
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248 | # function to get the primaries of a step from the dependencies-file steps.rc |
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249 | function getprimary() |
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250 | { |
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251 | getdbsetup |
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252 | grep $@"[.]Primaries:" $steps | grep -v '#' | sed -e "s/$@[.]Primaries://" |
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253 | } |
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254 | |
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255 | # function to get the join of a step |
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256 | # (normal join but using different primaries) |
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257 | # from the dependencies-file steps.rc |
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258 | function getjoin() |
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259 | { |
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260 | getdbsetup |
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261 | grep $@"[.]Join:" $steps | grep -v '#' | sed -e "s/$@[.]Join://" |
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262 | } |
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263 | |
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264 | # function to get the special join of a step |
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265 | # (i.e. join with a different table) |
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266 | # from the dependencies-file steps.rc |
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267 | function getspecialjoin() |
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268 | { |
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269 | getdbsetup |
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270 | grep $@"[.]SpecialJoin:" $steps | grep -v '#' | sed -e "s/$@[.]SpecialJoin://" |
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271 | } |
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272 | |
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273 | # function to get the needs of a step from the dependencies-file steps.rc |
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274 | function getneeds() |
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275 | { |
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276 | getdbsetup |
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277 | grep $@"[.]Needs:" $steps | sed -e "s/$@[.]Needs://" |
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278 | } |
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279 | |
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280 | # function to create the middle part of a query |
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281 | # which is identical for the functions getstatus() and gettodo() |
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282 | function middlepartofquery() |
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283 | { |
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284 | # add from which table the information is queried |
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285 | query=$query" FROM "$step"Status " |
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286 | # add the joins to the tables in which the status of the preceding steps is stored |
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287 | for need in $needs |
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288 | do |
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289 | needprims=( `getprimary $need` ) |
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290 | # make sure that the correct joins are used |
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291 | # in case the primaries of the step and the need are |
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292 | # the same, the tables are join with these primaries |
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293 | # otherwise it is checked whether there has to be a |
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294 | # join with different primaries (indicated as 'Join' |
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295 | # in the steps.rc |
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296 | # 'SpecialJoins' do not have to be taken into account here |
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297 | if [ "`echo ${needprims[@]}`" == "`echo ${prims[@]}`" ] |
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298 | then |
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299 | query=$query" LEFT JOIN "$need"Status USING (${prims[@]}) " |
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300 | else |
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301 | stdjoin=`getjoin $need` |
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302 | if ! [ "$stdjoin" = "" ] |
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303 | then |
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304 | query=$query" "$stdjoin" " |
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305 | fi |
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306 | fi |
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307 | done |
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308 | # add condition |
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309 | query=$query" WHERE " |
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310 | # add condition for the status of the peceding steps |
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311 | counter=0 |
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312 | for need in $needs |
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313 | do |
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314 | if [ $counter -gt 0 ] |
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315 | then |
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316 | query=$query" AND " |
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317 | fi |
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318 | needprims=( `getprimary $need` ) |
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319 | # in case the primaries of the tables agree |
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320 | # or there is just a normal 'Join' needed |
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321 | # only the condition is added to the query |
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322 | # for tables which need a join with a different |
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323 | # table, a special query is added using the |
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324 | # 'SpecialJoin' from the steps.rc |
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325 | if [ "`echo ${needprims[@]}`" == "`echo ${prims[@]}`" ] || ! [ "$stdjoin" = "" ] |
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326 | then |
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327 | query=$query" NOT ISNULL("$need"Status.fStartTime) AND " |
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328 | query=$query" NOT ISNULL("$need"Status.fStopTime) AND " |
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329 | query=$query" ISNULL("$need"Status.fReturnCode) " |
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330 | else |
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331 | query=$query" (SELECT COUNT(*) FROM "$need"Status " |
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332 | query=$query" "`getspecialjoin $need`" " |
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333 | query=$query" WHERE "$step"Status."`echo ${prims[0]} | sed -e 's/,//g'`"="$step"Status."`echo ${prims[0]} | sed -e 's/,//g'` |
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334 | for (( j=1 ; j < ${#prims[@]} ; j++ )) |
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335 | do |
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336 | query=$query" AND "$step"Status."`echo ${prims[$j]} | sed -e 's/,//g'`"="$step"Status."`echo ${prims[$j]} | sed -e 's/,//g'` |
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337 | done |
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338 | query=$query") = (SELECT COUNT(*) FROM "$need"Status " |
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339 | query=$query" "`getspecialjoin $need`" " |
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340 | query=$query" WHERE "$step"Status."`echo ${prims[0]} | sed -e 's/,//g'`"="$step"Status."`echo ${prims[0]} | sed -e 's/,//g'` |
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341 | for (( j=1 ; j < ${#prims[@]} ; j++ )) |
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342 | do |
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343 | query=$query" AND "$step"Status."`echo ${prims[$j]} | sed -e 's/,//g'`"="$step"Status."`echo ${prims[$j]} | sed -e 's/,//g'` |
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344 | done |
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345 | query=$query" AND NOT ISNULL(fStartTime) " |
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346 | query=$query" AND NOT ISNULL(fStopTime) " |
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347 | query=$query" AND ISNULL(fReturnCode)) " |
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348 | fi |
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349 | counter=`echo $counter + 1 | bc -l` |
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350 | done |
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351 | # add condition for the status of the step itself |
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352 | if [ $counter -gt 0 ] |
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353 | then |
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354 | query=$query" AND " |
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355 | fi |
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356 | query=$query" ISNULL("$step"Status.fStartTime) " |
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357 | query=$query" AND ISNULL("$step"Status.fStopTime) " |
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358 | query=$query" AND ISNULL("$step"Status.fReturnCode) " |
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359 | } |
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360 | |
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361 | # function to get todolist |
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362 | # returns the next or the list of next steps |
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363 | function gettodo() |
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364 | { |
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365 | # reset the variable for the number of the next step |
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366 | process= |
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367 | printprocesslog "INFO getting todo..." |
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368 | getstepinfo |
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369 | # get query |
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370 | query=" SELECT "`echo ${prims[0]} | sed -e 's/,//g'` |
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371 | for (( j=1 ; j < ${#prims[@]} ; j++ )) |
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372 | do |
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373 | query=$query", "`echo ${prims[$j]} | sed -e 's/,//g'` |
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374 | done |
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375 | # get middle par of query |
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376 | middlepartofquery |
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377 | # add requirement for production host in case it is needed |
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378 | if [ "$2 " != " " ] |
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379 | then |
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380 | query=$query" AND fProductionHostKEY=$2 " |
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381 | fi |
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382 | # order by priority to the the number of the next step to be done |
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383 | query=$query" ORDER BY "$step"Status.fPriority desc " |
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384 | # add limitation in case only one or a limited number of |
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385 | # processes should be executed |
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386 | if [ "$1 " != " " ] |
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387 | then |
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388 | query=$query" limit 0, $1 " |
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389 | fi |
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390 | # print query |
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391 | #echo " gettodo QUERY: "$query |
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392 | printprocesslog "INFO gettodo QUERY: "$query |
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393 | # execute query |
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394 | if ! process=`mysql -s -u $us --password=$pw --host=$ho $db -e " $query "` |
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395 | then |
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396 | printprocesslog "ERROR could not query processes from db (program: $program, function gettodo)" |
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397 | finish |
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398 | fi |
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399 | # get numbers of next step from mysql result |
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400 | if [ "$process" = "" ] |
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401 | then |
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402 | printprocesslog "INFO => nothing to do" |
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403 | finish |
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404 | else |
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405 | primaries=( $process ) |
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406 | num=`expr ${#primaries[@]} / ${#prims[@]} ` |
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407 | fi |
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408 | } |
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409 | |
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410 | # function to get the number of processes which still have to be done |
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411 | function getstatus() |
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412 | { |
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413 | # reset the variable for the number of steps to be done |
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414 | numproc= |
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415 | getstepinfo |
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416 | # get query |
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417 | query=" SELECT COUNT(*), 1 " # the 1 is just for grouping |
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418 | # get middle part of query |
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419 | middlepartofquery |
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420 | # add requirement for production host in case it is needed |
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421 | if [ "$1 " != " " ] |
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422 | then |
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423 | query=$query" AND fProductionHostKEY=$1 " |
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424 | fi |
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425 | # group by an 'artifical' column to get the number of lines |
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426 | query=$query" GROUP BY 2 " |
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427 | # printing query |
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428 | #echo " getstatus QUERY: "$query |
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429 | printprocesslog "INFO getstatus QUERY: "$query |
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430 | # execute query |
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431 | if ! numprocs=( `mysql -s -u $us --password=$pw --host=$ho $db -e " $query "` ) |
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432 | then |
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433 | printprocesslog "ERROR could not query number of processes from db (program: $program, function getstatus)" |
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434 | echo `date +%F\ %T`" ERROR could not query number of processes from db (program: $program, function getstatus)" |
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435 | continue |
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436 | fi |
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437 | # get number of processes from mysql result |
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438 | if [ "${numprocs[1]}" = "" ] |
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439 | then |
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440 | numproc=0 |
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441 | else |
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442 | numproc=${numprocs[0]} |
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443 | fi |
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444 | } |
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445 | |
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446 | # function to set status of a process in the db |
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447 | function setstatus() |
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448 | { |
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449 | # remark: |
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450 | # this function does not include the 'Default' flag |
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451 | # for resetting steps |
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452 | |
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453 | # for dowebplots (there are steps which have no entry in the DB) |
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454 | if [ "$step" = "no" ] |
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455 | then |
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456 | return |
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457 | fi |
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458 | |
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459 | # reset status values |
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460 | starttime=NULL |
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461 | stoptime=NULL |
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462 | returncode=NULL |
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463 | # evaluate the status values |
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464 | case $@ in |
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465 | start) printprocesslog "INFO setstatus start" |
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466 | starttime="Now()" |
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467 | ;; |
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468 | stop) case $check in |
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469 | ok) printprocesslog "INFO setstatus stop - ok" |
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470 | starttime=noreset |
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471 | stoptime="Now()" |
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472 | ;; |
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473 | no) printprocesslog "INFO setstatus stop - nothing new" |
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474 | check="ok" |
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475 | ;; |
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476 | *) printprocesslog "INFO setstatus stop - failed" |
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477 | starttime=noreset |
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478 | stoptime="Now()" |
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479 | if [ "$check" == "" ] |
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480 | then |
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481 | returncode=1 |
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482 | else |
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483 | returncode=$check |
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484 | fi |
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485 | check="ok" |
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486 | ;; |
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487 | esac |
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488 | ;; |
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489 | *) printprocesslog "ERROR function setstatus got wrong variable" |
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490 | finish |
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491 | ;; |
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492 | esac |
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493 | # get |
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494 | getstepinfo |
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495 | |
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496 | # get the influences from the steps.rc by evaluating the needs of all steps |
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497 | influences=`grep $step $steps | grep "Needs" | grep -v "$step[.]Needs" | cut -d'.' -f1` |
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498 | |
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499 | # get query |
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500 | query=" UPDATE "$step"Status " |
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501 | # add joins to the influenced tables |
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502 | for influence in $influences |
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503 | do |
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504 | # make sure that the right join is done |
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505 | # in case the is a 'Join' given for the |
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506 | # influenced step, this is added |
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507 | # otherwise it is checked whether the executed step |
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508 | # itself needs a 'Join' (i.e. has different primaries) |
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509 | # if yes, the tables are joined with the primaries of the influenced step |
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510 | # else with the primaries of the executed step itself |
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511 | stdjoin=`getjoin $influence` |
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512 | if ! [ "$stdjoin" = "" ] |
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513 | then |
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514 | query=$query" "$stdjoin" " |
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515 | else |
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516 | stdjoin2=`getjoin $step` |
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517 | if [ "$stdjoin2" == "" ] |
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518 | then |
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519 | query=$query" LEFT JOIN "$influence"Status USING("`getprimary $influence`") " |
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520 | else |
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521 | query=$query" LEFT JOIN "$influence"Status USING("`getprimary $step`") " |
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522 | fi |
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523 | fi |
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524 | done |
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525 | # set the status values according to the new status of the step |
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526 | query=$query" SET " |
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527 | if ! [ "$starttime" = "noreset" ] |
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528 | then |
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529 | query=$query" "$step"Status.fStartTime=$starttime, " |
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530 | fi |
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531 | query=$query" "$step"Status.fStopTime=$stoptime, "$step"Status.fReturnCode=$returncode " |
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532 | # set also the status values of the influenced steps |
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533 | for influence in $influences |
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534 | do |
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535 | query=$query", "$influence"Status.fStartTime=NULL " |
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536 | query=$query", "$influence"Status.fStopTime=NULL " |
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537 | query=$query", "$influence"Status.fReturnCode=NULL " |
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538 | done |
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539 | # give the condition for which step the status values have to be set |
---|
540 | query=$query" WHERE " |
---|
541 | if [ "$s" = "" ] |
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542 | then |
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543 | s=0 |
---|
544 | fi |
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545 | query=$query" "`echo ${prims[0]} | sed -e 's/,//g'`"='${primaries[$s*${#prims[@]}]}'" |
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546 | for (( j=1 ; j < ${#prims[@]} ; j++ )) |
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547 | do |
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548 | query=$query" AND "`echo ${prims[$j]} | sed -e 's/,//g'`"='${primaries[$s*${#prims[@]}+$j]}' " |
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549 | done |
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550 | # print query |
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551 | #echo " setstatus QUERY: "$query |
---|
552 | printprocesslog "INFO setstatus QUERY: "$query |
---|
553 | # execute query |
---|
554 | if ! mysql -s -u $us --password=$pw --host=$ho $db -e " $query " |
---|
555 | then |
---|
556 | printprocesslog "ERROR could not set status in db (program: $program, function setstatus)" |
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557 | finish |
---|
558 | fi |
---|
559 | } |
---|
560 | |
---|
561 | # function to send a mysql query |
---|
562 | function sendquery() |
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563 | { |
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564 | getdbsetup |
---|
565 | printprocesslog "INFO sendquery QUERY: "$query |
---|
566 | if ! val=`mysql -s -u $us --password=$pw --host=$ho $db -e " $query "` |
---|
567 | then |
---|
568 | printprocesslog "ERROR could not query db (program: $program, function sendquery)" |
---|
569 | return 1 |
---|
570 | fi |
---|
571 | if [ "$val" = "NULL" ] |
---|
572 | then |
---|
573 | val= |
---|
574 | fi |
---|
575 | echo $val |
---|
576 | return 0 |
---|
577 | } |
---|
578 | |
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