| 1 | #!/bin/sh
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| 2 | #
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| 3 | # ========================================================================
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| 4 | #
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| 5 | # *
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| 6 | # * This file is part of MARS, the MAGIC Analysis and Reconstruction
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| 7 | # * Software. It is distributed to you in the hope that it can be a useful
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| 8 | # * and timesaving tool in analysing Data of imaging Cerenkov telescopes.
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| 9 | # * It is distributed WITHOUT ANY WARRANTY.
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| 10 | # *
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| 11 | # * Permission to use, copy, modify and distribute this software and its
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| 12 | # * documentation for any purpose is hereby granted without fee,
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| 13 | # * provided that the above copyright notice appear in all copies and
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| 14 | # * that both that copyright notice and this permission notice appear
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| 15 | # * in supporting documentation. It is provided "as is" without express
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| 16 | # * or implied warranty.
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| 17 | # *
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| 18 | #
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| 19 | #
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| 20 | # Author(s): Daniela Dorner 05/2005 <mailto:dorner@astro.uni-wuerzburg.de>
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| 21 | #
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| 22 | # Copyright: MAGIC Software Development, 2000-2010
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| 23 | #
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| 24 | #
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| 25 | # ========================================================================
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| 26 | #
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| 27 | # This a resource file for the scripts, in which the standard paths and
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| 28 | # functions, which are needed more often are stored.
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| 29 | # Only constant variables are stored here, changing variables are stored
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| 30 | # in datacenter/scripts/setup
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| 31 | #
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| 32 |
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| 33 | # check if script has been started with absolute path
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| 34 | if ! dirname $0 | grep -E '^/' >/dev/null 2>&1
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| 35 | then
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| 36 | echo "Please start your script with an absolute path."
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| 37 | exit
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| 38 | fi
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| 39 |
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| 40 | if [ "$AUTOMATIONSETUP" = "" ]
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| 41 | then
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| 42 | echo "Please set the environment variable \$AUTOMATIONSETUP."
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| 43 | exit
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| 44 | fi
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| 45 |
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| 46 | # possible solution for $0 problem:
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| 47 | # ${BASH_SOURCE[0]}
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| 48 | # but has to be checked and tested more carefully
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| 49 | # should solve at least problem with login-shell and with source
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| 50 | source `dirname $0`/setup.$AUTOMATIONSETUP
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| 51 |
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| 52 | datetime=`date +%F-%H-%M-%S`
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| 53 |
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| 54 |
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| 55 | # function to make sure that a directory is made
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| 56 | function makedir()
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| 57 | {
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| 58 | if [ ! -d $@ ]
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| 59 | then
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| 60 | mkdir -pv $@
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| 61 | if [ ! -d $@ ]
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| 62 | then
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| 63 | if ! [ "$processlog" = "" ]
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| 64 | then
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| 65 | echo `date +%F\ %T`" "`whoami`"@"$HOSTNAME" "`basename $0`"["$$"] ERROR could not make dir "$@ >> $processlog
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| 66 | else
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| 67 | echo "could not make dir "$@
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| 68 | fi
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| 69 | if ls $lockfile >/dev/null 2>&1
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| 70 | then
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| 71 | rm -v $lockfile
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| 72 | fi
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| 73 | exit
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| 74 | fi
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| 75 | fi
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| 76 | }
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| 77 |
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| 78 | # logging paths for runlogs and processlog
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| 79 | runlogpath=$logpath/run/`date +%Y/%m/%d`
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| 80 | processlogpath=$logpath/processlog
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| 81 | makedir $runlogpath
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| 82 | makedir $processlogpath
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| 83 | processlog=$processlogpath/process`date +%F`.log
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| 84 |
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| 85 | makedir $lockpath
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| 86 |
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| 87 |
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| 88 | # function to provide proper logging in a single logfile ($processlog)
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| 89 | function printprocesslog
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| 90 | {
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| 91 | makedir $processlogpath
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| 92 | echo `date +%F\ %T`" "`whoami`"@"$HOSTNAME" "`basename $0`"["$$"] "$@ >> $processlog
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| 93 | }
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| 94 |
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| 95 | # function to exit a script properly
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| 96 | function finish()
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| 97 | {
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| 98 | if ! [ "$lockfile" = "" ] && ls $lockfile >/dev/null 2>&1
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| 99 | then
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| 100 | printprocesslog "INFO " `rm -v $lockfile`
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| 101 | fi
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| 102 | printprocesslog "INFO finished $0"
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| 103 | exit
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| 104 | }
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| 105 |
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| 106 |
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| 107 | # set checkvalue to ok at the beginning of the scripts
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| 108 | check="ok"
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| 109 |
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| 110 | #failed codes
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| 111 | #sequence build status
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| 112 | Fbuildsequ=1
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| 113 | Fdoexcl=2
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| 114 | #run process status
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| 115 | Ftimecorr=3
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| 116 | Ffillraw=4
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| 117 | Fsinope=5
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| 118 | Ffillsinope=6
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| 119 | Fresetexcl=7
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| 120 | #sequence process status
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| 121 | Fwritesequfile=8
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| 122 | Ffilesavail=9
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| 123 | Fnoccfile=10
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| 124 | Fnocacofile=11
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| 125 | Fmerppcc=12
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| 126 | Fmerppcaco=13
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| 127 | Fcallisto=14
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| 128 | Ffillcalib=15
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| 129 | Ffillsignal=16
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| 130 | Fstar=17
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| 131 | Ffillstar=18
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| 132 | #dataset process status
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| 133 | Fwritedatasetfile=19
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| 134 | Fstardone=20
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| 135 | Fganymed=21
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| 136 | Ffillganymed=22
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| 137 | #again run process status
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| 138 | FCompmux=26
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| 139 | Fdowebplots=27
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| 140 | #again mc run process status
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| 141 | Fmccallisto=28
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| 142 | Ffillmccalib=29
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| 143 | Ffillmcsignal=30
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| 144 | Fmcstar=31
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| 145 | Ffillmcstar=32
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| 146 | Fcorsikasimtel=33
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| 147 | Fchimp=34
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| 148 | Fchimpcp=35
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| 149 | Fctastar=36
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| 150 | Fctastarcp=37
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| 151 | FctastereoA=38
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| 152 | FctastereoB=39
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| 153 | FctastereoC=40
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| 154 | FctastereoD=41
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| 155 | FctastereoE=42
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| 156 | FctastereoF=43
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| 157 | FctastereoG=44
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| 158 | FctastereoH=45
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| 159 | Fctastereocp=46
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| 160 |
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| 161 | # setup for jobmanager:
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| 162 | # log files (can't be defined in script itself, as script can run longer
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| 163 | # than one day
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| 164 | jmerrorlog=$runlogpath/jobmanager-`whoami`-$HOSTNAME-$AUTOMATIONSETUP-`date +%F`-error.log
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| 165 | jmscriptlog=$runlogpath/jobmanager-`whoami`-$HOSTNAME-$AUTOMATIONSETUP-`date +%F`.log
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| 166 |
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| 167 | # check if rc-files are available
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| 168 | if ! ls $steps >/dev/null
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| 169 | then
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| 170 | echo "Can't find steps.rc ($steps)"
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| 171 | finish
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| 172 | fi
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| 173 | if ! ls $sqlrc >/dev/null
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| 174 | then
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| 175 | echo "Can't find sql.rc ($sqlrc)"
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| 176 | finish
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| 177 | fi
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| 178 |
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| 179 | # resetting values
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| 180 | pno=0
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| 181 | totalpno=0
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| 182 | running=0
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| 183 | queued=0
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| 184 | runningscript=0
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| 185 | queuedscript=0
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| 186 | stillinqueue=0
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| 187 |
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| 188 |
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| 189 | # alias (we cannot check the beginning of the line due to
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| 190 | # color codes in filldotraw.C)
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| 191 | alias 'intgrep'='grep -E -o \\\(int\\\)[0-9]+$ | grep -E -o [0-9]+'
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| 192 |
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| 193 |
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| 194 | # in the following the functions, which are needed by several scripts, are
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| 195 | # defined
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| 196 |
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| 197 | # function to check if a process is already locked
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| 198 | # command line option can be used to execute something, e.g. 'continue'
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| 199 | function checklock()
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| 200 | {
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| 201 | if ! echo `date +%F\ %T`" "`whoami`"@"$HOSTNAME" "`basename $0`"["$$"] "`uname -a` > $lockfile 2>/dev/null
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| 202 | then
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| 203 | printprocesslog "WARN lockfile $lockfile exists"
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| 204 | $@
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| 205 | exit
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| 206 | else
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| 207 | printprocesslog "INFO created lockfile $lockfile"
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| 208 | fi
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| 209 | }
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| 210 |
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| 211 | # print the current status values
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| 212 | function printstatusvalues()
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| 213 | {
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| 214 | echo "the current values are:"
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| 215 | echo " starttime=$starttime"
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| 216 | echo " stoptime=$stoptime"
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| 217 | echo " returncode=$returncode"
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| 218 | echo "-- check: -$check-"
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| 219 | echo ""
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| 220 | }
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| 221 |
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| 222 | # get the db-setup from the sql.rc
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| 223 | function getdbsetup()
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| 224 | {
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| 225 | db=`grep Database $sqlrc | grep -v '#' | sed -e 's/Database: //' -e 's/ //g'`
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| 226 | pw=`grep Password $sqlrc | grep -v '#' | sed -e 's/Password: //' -e 's/ //g'`
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| 227 | us=`grep User $sqlrc | grep -v '#' | sed -e 's/User: //' -e 's/ //g'`
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| 228 | ho=`grep URL $sqlrc | grep -v '#' | sed -e 's/ //g' -e 's/URL:mysql:\/\///'`
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| 229 | # echo "setup: "
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| 230 | # echo " db: "$db
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| 231 | # echo " pw: "$pw
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| 232 | # echo " us: "$us
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| 233 | # echo " ho: "$ho
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| 234 | }
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| 235 |
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| 236 | # function to get the needed information from the dependencies-file steps.rc
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| 237 | function getstepinfo()
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| 238 | {
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| 239 | getdbsetup
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| 240 | needs=`grep "$step[.]Needs:" $steps | grep -v '#' | sed -e "s/$step[.]Needs://"`
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| 241 | noderestricted=`grep "$step[.]NodeRestricted:" $steps | grep -v '#' | sed -e "s/$step[.]NodeRestricted://" -e 's/ //g'`
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| 242 | prims=( `grep "$step[.]Primaries:" $steps | grep -v '#' | sed -e "s/$step[.]Primaries://"` )
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| 243 | # echo " needs: $needs"
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| 244 | # echo " noderestricted: $noderestricted"
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| 245 | # echo " prims: ${prims[@]}"
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| 246 | }
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| 247 |
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| 248 | # function to get the primaries of a step from the dependencies-file steps.rc
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| 249 | function getprimary()
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| 250 | {
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| 251 | getdbsetup
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| 252 | grep $@"[.]Primaries:" $steps | grep -v '#' | sed -e "s/$@[.]Primaries://"
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| 253 | }
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| 254 |
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| 255 | # function to get the join of a step
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| 256 | # from the dependencies-file steps.rc
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| 257 | # $1 gives the step
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| 258 | # $2 gives the type of join
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| 259 | function getjoin()
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| 260 | {
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| 261 | getdbsetup
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| 262 | grep $1"[.]"$2"Join:" $steps | grep -v '#' | sed -e "s/$1[.]$2Join://"
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| 263 | }
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| 264 |
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| 265 | # function to get the needs of a step from the dependencies-file steps.rc
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| 266 | function getneeds()
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| 267 | {
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| 268 | getdbsetup
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| 269 | grep $@"[.]Needs:" $steps | sed -e "s/$@[.]Needs://"
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| 270 | }
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| 271 |
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| 272 | # subquery which is needed to check the
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| 273 | # status of the steps with different primaries
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| 274 | function subquerypart()
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| 275 | {
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| 276 | query=$query" SELECT COUNT(*) FROM "$need"Status "
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| 277 | query=$query" "`getjoin $need "SpecialInfluence"`" "
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| 278 | query=$query" WHERE "$step"Status."`echo ${prims[0]} | sed -e 's/,//g'`"="$step"Status."`echo ${prims[0]} | sed -e 's/,//g'`
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| 279 | for (( j=1 ; j < ${#prims[@]} ; j++ ))
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| 280 | do
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| 281 | query=$query" AND "$step"Status."`echo ${prims[$j]} | sed -e 's/,//g'`"="$step"Status."`echo ${prims[$j]} | sed -e 's/,//g'`
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| 282 | done
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| 283 | }
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| 284 |
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| 285 | # function to create the middle part of a query
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| 286 | # which is identical for the functions getstatus() and gettodo()
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| 287 | function middlepartofquery()
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| 288 | {
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| 289 | # add from which table the information is queried
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| 290 | query=$query" FROM "$step"Status "
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| 291 | # add the joins to the tables in which the status of the preceding steps is stored
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| 292 | for need in $needs
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| 293 | do
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| 294 | needprims=( `getprimary $need` )
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| 295 | # make sure that the correct joins are used
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| 296 | specialneedjoin=`getjoin $need "SpecialNeed"`
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| 297 | if [ "$specialneedjoin" = "" ]
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| 298 | then
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| 299 | query=$query" LEFT JOIN "$need"Status USING (${needprims[@]}) "
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| 300 | else
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| 301 | query=$query" "$specialneedjoin" "
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| 302 | query=$query" LEFT JOIN "$need"Status USING (${needprims[@]}) "
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| 303 | break
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| 304 | fi
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| 305 | done
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| 306 | # add condition
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| 307 | query=$query" WHERE "
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| 308 | # add condition for the status of the peceding steps
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| 309 | counter=0
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| 310 | specialneedjoin=
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| 311 | for need in $needs
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| 312 | do
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| 313 | if [ $counter -gt 0 ]
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| 314 | then
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| 315 | query=$query" AND "
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| 316 | fi
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| 317 | specialneedjoin=$specialneedjoin" "`getjoin $need "SpecialNeed"`
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| 318 | if [ "$specialneedjoin" = " " ]
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| 319 | then
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| 320 | # condition for step with same primaries
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| 321 | query=$query" NOT ISNULL("$need"Status.fStartTime) AND "
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| 322 | query=$query" NOT ISNULL("$need"Status.fStopTime) AND "
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| 323 | query=$query" ISNULL("$need"Status.fReturnCode) "
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| 324 | specialneedjoin=
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| 325 | else
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| 326 | # special query to check steps which
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| 327 | # do not have the same primaries
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| 328 | # comparison of
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| 329 | # number of rows
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| 330 | # with
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| 331 | # number of rows which are done
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| 332 | query=$query" ( "
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| 333 | subquerypart
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| 334 | query=$query" ) = ( "
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| 335 | subquerypart
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| 336 | query=$query" AND NOT ISNULL(fStartTime) "
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| 337 | query=$query" AND NOT ISNULL(fStopTime) "
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| 338 | query=$query" AND ISNULL(fReturnCode)) "
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| 339 | fi
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| 340 | counter=`echo $counter + 1 | bc -l`
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| 341 | done
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| 342 | # add condition for the status of the step itself
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| 343 | if [ $counter -gt 0 ]
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| 344 | then
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| 345 | query=$query" AND "
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| 346 | fi
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| 347 | query=$query" ISNULL("$step"Status.fStartTime) "
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| 348 | query=$query" AND ISNULL("$step"Status.fStopTime) "
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| 349 | query=$query" AND ISNULL("$step"Status.fReturnCode) "
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| 350 | }
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| 351 |
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| 352 | # function to get todolist
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| 353 | # returns the next or the list of next steps
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| 354 | function gettodo()
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| 355 | {
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| 356 | # reset the variable for the number of the next step
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| 357 | process=
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| 358 | printprocesslog "INFO getting todo..."
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| 359 | getstepinfo
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| 360 | # get query
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| 361 | query=" SELECT "`echo ${prims[0]} | sed -e 's/,//g'`
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| 362 | for (( j=1 ; j < ${#prims[@]} ; j++ ))
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| 363 | do
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| 364 | query=$query", "`echo ${prims[$j]} | sed -e 's/,//g'`
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| 365 | done
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| 366 | # get middle par of query
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| 367 | middlepartofquery
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| 368 | # add requirement for production host in case it is needed
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| 369 | if [ "$2 " != " " ]
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| 370 | then
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| 371 | query=$query" AND fProductionHostKEY=$2 "
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| 372 | fi
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| 373 | # order by priority to the the number of the next step to be done
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| 374 | query=$query" ORDER BY "$step"Status.fPriority desc "
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| 375 | # add limitation in case only one or a limited number of
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| 376 | # processes should be executed
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| 377 | if [ "$1 " != " " ]
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| 378 | then
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| 379 | query=$query" limit 0, $1 "
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| 380 | fi
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| 381 | # print query
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| 382 | #echo " gettodo QUERY: "$query
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| 383 | printprocesslog "INFO gettodo QUERY: "$query
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| 384 | # execute query
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| 385 | if ! process=`mysql -s -u $us --password=$pw --host=$ho $db -e " $query "`
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| 386 | then
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| 387 | printprocesslog "ERROR could not query processes from db (program: $program, function gettodo)"
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| 388 | finish
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| 389 | fi
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| 390 | # get numbers of next step from mysql result
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| 391 | if [ "$process" = "" ]
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| 392 | then
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| 393 | printprocesslog "INFO => nothing to do"
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| 394 | finish
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| 395 | else
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| 396 | primaries=( $process )
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| 397 | num=`expr ${#primaries[@]} / ${#prims[@]} `
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| 398 | fi
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| 399 | }
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| 400 |
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| 401 | # function to get the number of processes which still have to be done
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| 402 | function getstatus()
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| 403 | {
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| 404 | # reset the variable for the number of steps to be done
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| 405 | numproc=
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| 406 | getstepinfo
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| 407 | # get query
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| 408 | query=" SELECT COUNT(*), 1 " # the 1 is just for grouping
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| 409 | # get middle part of query
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| 410 | middlepartofquery
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| 411 | # add requirement for production host in case it is needed
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| 412 | if [ "$1 " != " " ]
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| 413 | then
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| 414 | query=$query" AND fProductionHostKEY=$1 "
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| 415 | fi
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| 416 | # group by an 'artifical' column to get the number of lines
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| 417 | query=$query" GROUP BY 2 "
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| 418 | # printing query
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| 419 | #echo " getstatus QUERY: "$query
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| 420 | printprocesslog "INFO getstatus QUERY: "$query
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| 421 | # execute query
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| 422 | if ! numprocs=( `mysql -s -u $us --password=$pw --host=$ho $db -e " $query "` )
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| 423 | then
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| 424 | printprocesslog "ERROR could not query number of processes from db (program: $program, function getstatus)"
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| 425 | echo `date +%F\ %T`" ERROR could not query number of processes from db (program: $program, function getstatus)"
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| 426 | continue
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| 427 | fi
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| 428 | # get number of processes from mysql result
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| 429 | if [ "${numprocs[1]}" = "" ]
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| 430 | then
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| 431 | numproc=0
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| 432 | else
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| 433 | numproc=${numprocs[0]}
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| 434 | fi
|
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| 435 | }
|
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| 436 |
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| 437 | # function to set status of a process in the db
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|---|
| 438 | function setstatus()
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|---|
| 439 | {
|
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| 440 | # remark:
|
|---|
| 441 | # this function does not include the 'Default' flag
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| 442 | # for resetting steps
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| 443 |
|
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| 444 | # for dowebplots (there are steps which have no entry in the DB)
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|---|
| 445 | if [ "$step" = "no" ]
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|---|
| 446 | then
|
|---|
| 447 | return
|
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| 448 | fi
|
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| 449 |
|
|---|
| 450 | # reset status values
|
|---|
| 451 | starttime=NULL
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|---|
| 452 | stoptime=NULL
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|---|
| 453 | returncode=NULL
|
|---|
| 454 | # evaluate the status values
|
|---|
| 455 | case $@ in
|
|---|
| 456 | start) printprocesslog "INFO setstatus start"
|
|---|
| 457 | starttime="Now()"
|
|---|
| 458 | ;;
|
|---|
| 459 | stop) case $check in
|
|---|
| 460 | ok) printprocesslog "INFO setstatus stop - ok"
|
|---|
| 461 | starttime=noreset
|
|---|
| 462 | stoptime="Now()"
|
|---|
| 463 | ;;
|
|---|
| 464 | no) printprocesslog "INFO setstatus stop - nothing new"
|
|---|
| 465 | check="ok"
|
|---|
| 466 | ;;
|
|---|
| 467 | *) printprocesslog "INFO setstatus stop - failed"
|
|---|
| 468 | starttime=noreset
|
|---|
| 469 | stoptime="Now()"
|
|---|
| 470 | if [ "$check" == "" ]
|
|---|
| 471 | then
|
|---|
| 472 | returncode=1
|
|---|
| 473 | else
|
|---|
| 474 | returncode=$check
|
|---|
| 475 | fi
|
|---|
| 476 | check="ok"
|
|---|
| 477 | ;;
|
|---|
| 478 | esac
|
|---|
| 479 | ;;
|
|---|
| 480 | *) printprocesslog "ERROR function setstatus got wrong variable"
|
|---|
| 481 | finish
|
|---|
| 482 | ;;
|
|---|
| 483 | esac
|
|---|
| 484 | # get
|
|---|
| 485 | getstepinfo
|
|---|
| 486 |
|
|---|
| 487 | # get the influences from the steps.rc by evaluating the needs of all steps
|
|---|
| 488 | influences=`grep $step $steps | grep "Needs" | grep -v "$step[.]Needs" | cut -d'.' -f1`
|
|---|
| 489 |
|
|---|
| 490 | # get query
|
|---|
| 491 | query=" UPDATE "$step"Status "
|
|---|
| 492 | # add joins to the influenced tables
|
|---|
| 493 | specialinfljoin=`getjoin $step "SpecialInfluence"`
|
|---|
| 494 | if ! [ "$specialinfljoin" = "" ]
|
|---|
| 495 | then
|
|---|
| 496 | query=$query" "$specialinfljoin
|
|---|
| 497 | fi
|
|---|
| 498 | for influence in $influences
|
|---|
| 499 | do
|
|---|
| 500 | infljoin=`getjoin $influence "Influence"`
|
|---|
| 501 | if [ "$infljoin" = "" ]
|
|---|
| 502 | then
|
|---|
| 503 | inflprims=( `getprimary $influence` )
|
|---|
| 504 | query=$query" LEFT JOIN "$influence"Status USING (${inflprims[@]}) "
|
|---|
| 505 | else
|
|---|
| 506 | query=$query" "$infljoin
|
|---|
| 507 | fi
|
|---|
| 508 | done
|
|---|
| 509 | # set the status values according to the new status of the step
|
|---|
| 510 | query=$query" SET "
|
|---|
| 511 | if ! [ "$starttime" = "noreset" ]
|
|---|
| 512 | then
|
|---|
| 513 | query=$query" "$step"Status.fStartTime=$starttime, "
|
|---|
| 514 | fi
|
|---|
| 515 | query=$query" "$step"Status.fStopTime=$stoptime, "$step"Status.fReturnCode=$returncode "
|
|---|
| 516 | # set also the status values of the influenced steps
|
|---|
| 517 | for influence in $influences
|
|---|
| 518 | do
|
|---|
| 519 | query=$query", "$influence"Status.fStartTime=NULL "
|
|---|
| 520 | query=$query", "$influence"Status.fStopTime=NULL "
|
|---|
| 521 | query=$query", "$influence"Status.fReturnCode=NULL "
|
|---|
| 522 | done
|
|---|
| 523 | # give the condition for which step the status values have to be set
|
|---|
| 524 | query=$query" WHERE "
|
|---|
| 525 | if [ "$s" = "" ]
|
|---|
| 526 | then
|
|---|
| 527 | s=0
|
|---|
| 528 | fi
|
|---|
| 529 | query=$query" "$step"Status."`echo ${prims[0]} | sed -e 's/,//g'`"='${primaries[$s*${#prims[@]}]}'"
|
|---|
| 530 | for (( j=1 ; j < ${#prims[@]} ; j++ ))
|
|---|
| 531 | do
|
|---|
| 532 | query=$query" AND "$step"Status."`echo ${prims[$j]} | sed -e 's/,//g'`"='${primaries[$s*${#prims[@]}+$j]}' "
|
|---|
| 533 | done
|
|---|
| 534 | # print query
|
|---|
| 535 | #echo " setstatus QUERY: "$query
|
|---|
| 536 | printprocesslog "INFO setstatus QUERY: "$query
|
|---|
| 537 | # execute query
|
|---|
| 538 | if ! mysql -s -u $us --password=$pw --host=$ho $db -e " $query "
|
|---|
| 539 | then
|
|---|
| 540 | printprocesslog "ERROR could not set status in db (program: $program, function setstatus)"
|
|---|
| 541 | finish
|
|---|
| 542 | fi
|
|---|
| 543 | }
|
|---|
| 544 |
|
|---|
| 545 | # function to send a mysql query
|
|---|
| 546 | function sendquery()
|
|---|
| 547 | {
|
|---|
| 548 | getdbsetup
|
|---|
| 549 | printprocesslog "INFO sendquery QUERY: "$query
|
|---|
| 550 | if ! val=`mysql -s -u $us --password=$pw --host=$ho $db -e " $query "`
|
|---|
| 551 | then
|
|---|
| 552 | printprocesslog "ERROR could not query db (program: $program, function sendquery)"
|
|---|
| 553 | return 1
|
|---|
| 554 | fi
|
|---|
| 555 | if [ "$val" = "NULL" ]
|
|---|
| 556 | then
|
|---|
| 557 | val=
|
|---|
| 558 | fi
|
|---|
| 559 | echo $val
|
|---|
| 560 | return 0
|
|---|
| 561 | }
|
|---|
| 562 |
|
|---|
