| 1 | /* ======================================================================== *\
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| 2 | !
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| 3 | ! *
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| 4 | ! * This file is part of MARS, the MAGIC Analysis and Reconstruction
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| 5 | ! * Software. It is distributed to you in the hope that it can be a useful
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| 6 | ! * and timesaving tool in analysing Data of imaging Cerenkov telescopes.
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| 7 | ! * It is distributed WITHOUT ANY WARRANTY.
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| 8 | ! *
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| 9 | ! * Permission to use, copy, modify and distribute this software and its
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| 10 | ! * documentation for any purpose is hereby granted without fee,
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| 11 | ! * provided that the above copyright notice appear in all copies and
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| 12 | ! * that both that copyright notice and this permission notice appear
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| 13 | ! * in supporting documentation. It is provided "as is" without express
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| 14 | ! * or implied warranty.
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| 15 | ! *
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| 16 | !
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| 17 | !
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| 18 | ! Author(s): Markus Gaug, 11/2003 <mailto:markus@ifae.es>
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| 19 | !
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| 20 | ! Copyright: MAGIC Software Development, 2000-2004
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| 21 | !
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| 22 | !
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| 23 | \* ======================================================================== */
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| 24 | /////////////////////////////////////////////////////////////////////////////
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| 25 | //
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| 26 | // calibration.C
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| 27 | //
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| 28 | // Needs as arguments the run number of a calibration file ("*_C_*.root") and
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| 29 | // the run number of the corresponding pedestal file ("*_P_*.root").
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| 30 | //
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| 31 | // The TString inpath has to be set correctly.
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| 32 | //
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| 33 | // The macro searches for the pulser colour which corresponds to the calibration
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| 34 | // run number. If the run number is smaller than 20000, pulser colour "CT1"
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| 35 | // is assumed, otherwise, it searches for the strings "green", "blue", "uv" or
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| 36 | // "ct1" in the filenames. If no colour or multiple colours are found, the
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| 37 | // execution is aborted.
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| 38 | //
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| 39 | // The container MBadPixelsCam is created and followed during the execution of the
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| 40 | // rest of the macro.
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| 41 | //
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| 42 | // A first loop over the pedestal file is performed using the class MJPedestal
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| 43 | //
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| 44 | // The container MCalibrationQECam is created and followed during the execution of the
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| 45 | // rest of the macro.
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| 46 | //
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| 47 | // A loop over the calibration files is performed using the class MJCalibration.
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| 48 | // The results are displayed using the MJCalibration::SetNormalDisplay() facility,
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| 49 | // but other displays can easily be uncommented.
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| 50 | // The call to MJCalibration skips the relative time calibration, which can be
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| 51 | // uncommented as well.
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| 52 | //
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| 53 | // Last, a third loop is performed over the calibration file again in order to
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| 54 | // "calibrate" it and test the resulting outcome.
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| 55 | //
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| 56 | //////////////////////////////////////////////////////////////////////////////////////////
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| 57 | #include "MJPedestal.h"
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| 58 | #include "MJCalibration.h"
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| 59 | #include "MJExtractSignal.h"
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| 60 | #include "MJExtractCalibTest.h"
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| 61 | #include "MExtractFixedWindowPeakSearch.h"
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| 62 | #include "MExtractSlidingWindow.h"
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| 63 | #include "MExtractFixedWindow.h"
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| 64 | #include "MExtractFixedWindowSpline.h"
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| 65 | #include "MExtractAmplitudeSpline.h"
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| 66 | #include "MExtractTimeHighestIntegral.h"
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| 67 | #include "MExtractTimeFastSpline.h"
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| 68 | #include "MExtractTimeAndChargeDigitalFilter.h"
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| 69 | #include "MExtractTimeAndChargeSlidingWindow.h"
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| 70 | #include "MExtractTimeAndChargeSpline.h"
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| 71 | #include "MRunIter.h"
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| 72 | #include "MStatusDisplay.h"
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| 73 | #include "MCalibrationQECamMagic.h"
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| 74 | #include "MCalibrationQECam.h"
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| 75 | #include "MBadPixelsCam.h"
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| 76 | #include "MArgs.h"
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| 77 | #include "MArray.h"
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| 78 | #include "MLog.h"
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| 79 | #include "MParContainer.h"
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| 80 |
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| 81 | #include "TStyle.h"
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| 82 | #include "TObject.h"
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| 83 | #include "TObjectTable.h"
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| 84 | #include "TSystem.h"
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| 85 |
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| 86 | #include <fstream>
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| 87 |
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| 88 | using namespace std;
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| 89 |
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| 90 | static TString outpath = "./";
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| 91 | static TString inpath = "/home/rootdata/Calib/2004_07_06";
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| 92 | static TString badfile = "";
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| 93 | //static TString badfile = "badpixels_only0_559_560.dat";
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| 94 | static TString weightfile = "msignal/calibration_weights_UV.dat";
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| 95 | //static TString weightfile = "msignal/cosmics_weights.dat";
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| 96 | //
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| 97 | // the default pedestal run for the calibration
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| 98 | //
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| 99 | static const Int_t pedrun = 31756;
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| 100 | //
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| 101 | // the default start calibration run
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| 102 | //
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| 103 | static const Int_t calrun1 = 31755;
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| 104 | //
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| 105 | // the default last calibration run (if 0, only one run is taken, otherwise consecutive runs
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| 106 | // between calrun1 and calrun2)
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| 107 | //
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| 108 | static const Int_t calrun2 = 0;
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| 109 | //
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| 110 | // A switch to output debugging information about Objects use
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| 111 | //
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| 112 | static Bool_t debug = kFALSE;
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| 113 | //
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| 114 | // A switch to use the Blind Pixel
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| 115 | //
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| 116 | static Bool_t blindpix = kTRUE;
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| 117 | //
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| 118 | // A switch to use the PIN Diode
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| 119 | //
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| 120 | static Bool_t pindiode = kTRUE;
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| 121 | //
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| 122 | // Tell if you want to calibrate times:
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| 123 | //
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| 124 | static Bool_t useTimes = kTRUE;
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| 125 | //
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| 126 | // Tell if you want to use a combined extractor:
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| 127 | //
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| 128 | static Bool_t useTimeAndCharge = kTRUE;
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| 129 | //
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| 130 | // Tell if you want to use the display:
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| 131 | //
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| 132 | static Bool_t useDisplay = kTRUE;
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| 133 | //
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| 134 | // Tell if you want to test the result afterwards
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| 135 | //
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| 136 | static Bool_t useTest = kFALSE;
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| 137 | //
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| 138 | // Tell if you want to test the intensity calibration
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| 139 | //
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| 140 | static Bool_t useIntensity = kFALSE;
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| 141 | //
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| 142 | // Tell if you want to use MPedCalcFromLogain for the pedestal calculation
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| 143 | //
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| 144 | static Bool_t usedata = kFALSE;
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| 145 | //
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| 146 | // Tell if you want to store and read the F0 and F1- files
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| 147 | //
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| 148 | static Bool_t usestorage = kFALSE;
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| 149 | //
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| 150 | Int_t calibration(const Int_t prun=pedrun,
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| 151 | const Int_t crun1=calrun1, const Int_t crun2=calrun2)
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| 152 | {
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| 153 |
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| 154 | if (debug)
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| 155 | TObject::SetObjectStat(kTRUE);
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| 156 |
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| 157 | //
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| 158 | // Choose the signal Extractor:
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| 159 | //
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| 160 | // PURE CHARGE EXTRACTORS:
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| 161 | // MExtractFixedWindowPeakSearch extractor;
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| 162 | // MExtractSlidingWindow extractor;
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| 163 | // MExtractFixedWindow extractor;
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| 164 | // MExtractFixedWindowSpline extractor;
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| 165 | // MExtractAmplitudeSpline extractor;
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| 166 | //
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| 167 | // PURE TIME EXTRACTORS:
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| 168 | // ATTENTION: If an extractor deriving from MExtractTimeAndCharge is
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| 169 | // used, you may want to use the timing calculated directly
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| 170 | // from there. Use the flag: "useTimeAndCharge" in this case
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| 171 | //
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| 172 | // MExtractTimeHighestIntegral timeext;
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| 173 | MExtractTimeFastSpline timeext;
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| 174 | // MExtractTimeSpline timeext;
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| 175 | //
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| 176 | // COMBINED TIME AND CHARGE EXTRACTORS:
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| 177 | // (You have to set the variable "useTimeAndCharge" in order to use the
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| 178 | // time calculated by this extractor!)
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| 179 | MExtractTimeAndChargeDigitalFilter extractor;
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| 180 | // MExtractTimeAndChargeSpline extractor;
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| 181 | // MExtractTimeAndChargeSlidingWindow extractor;
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| 182 | //
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| 183 | // Set Ranges or Windows
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| 184 | //
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| 185 | // extractor.SetRange(1,14,4,12);
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| 186 | // extractor.SetWindowSize(6,6);
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| 187 | // timeext.SetRange(1,14,4,12);
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| 188 | // timeext.SetWindowSize(6,6);
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| 189 | //
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| 190 | // Set additional information for some extractors
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| 191 | //
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| 192 | // Digital Filter:
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| 193 | extractor.ReadWeightsFile(weightfile.Data());
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| 194 | // extractor.ReadWeightsFile("");
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| 195 | // TimeAndChargeSpline:
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| 196 | // extractor.SetChargeType(MExtractTimeAndChargeSpline::kIntegral);
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| 197 | // extractor.SetTimeType(MExtractTimeAndChargeSpline::kHalfMaximum);
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| 198 |
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| 199 | MRunIter pruns;
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| 200 | MRunIter cruns;
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| 201 |
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| 202 | pruns.AddRun(prun,inpath);
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| 203 |
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| 204 | if (crun2==0)
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| 205 | cruns.AddRun(crun1,inpath);
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| 206 | else
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| 207 | cruns.AddRuns(crun1,crun2,inpath);
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| 208 |
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| 209 | gStyle->SetOptStat(1111);
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| 210 | gStyle->SetOptFit();
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| 211 | gStyle->SetTitleSize(0.1,"u");
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| 212 | gStyle->SetLineWidth(1);
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| 213 |
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| 214 | MStatusDisplay *display = NULL;
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| 215 |
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| 216 | if (useDisplay)
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| 217 | {
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| 218 | display = new MStatusDisplay;
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| 219 | display->SetUpdateTime(3000);
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| 220 | display->Resize(850,700);
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| 221 | }
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| 222 |
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| 223 | /************************************/
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| 224 | /* FIRST LOOP: PEDESTAL COMPUTATION */
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| 225 | /************************************/
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| 226 |
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| 227 | //
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| 228 | // Hand over to the jobs a QE Cam with Cornings initialized
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| 229 | //
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| 230 | MCalibrationQECamMagic qecam;
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| 231 | MBadPixelsCam badcam;
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| 232 | //
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| 233 | // If you want to exclude pixels from the beginning, read
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| 234 | // an ascii-file with the corr. pixel numbers (see MBadPixelsCam)
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| 235 | //
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| 236 | if (!badfile.IsNull())
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| 237 | {
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| 238 | ifstream f(badfile.Data());
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| 239 | badcam.AsciiRead((istream&)f);
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| 240 | f.close();
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| 241 | }
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| 242 |
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| 243 | MJPedestal pedloop;
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| 244 | if (usedata)
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| 245 | pedloop.SetUseData();
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| 246 | pedloop.SetNoStorage(!usestorage);
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| 247 | pedloop.SetEnvDebug(debug);
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| 248 | pedloop.SetExtractor(&extractor);
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| 249 | pedloop.SetInput(&pruns);
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| 250 | pedloop.SetPathOut(outpath.Data());
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| 251 | if (useDisplay)
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| 252 | {
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| 253 | pedloop.SetDisplay(display);
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| 254 | pedloop.SetDataCheckDisplay();
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| 255 | }
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| 256 | pedloop.SetBadPixels(badcam);
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| 257 |
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| 258 | if (!pedloop.Process())
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| 259 | return 1;
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| 260 |
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| 261 | /****************************************/
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| 262 | /* SECOND LOOP: CALIBRATION COMPUTATION */
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| 263 | /****************************************/
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| 264 |
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| 265 | MJCalibration calloop;
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| 266 |
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| 267 | if (debug)
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| 268 | calloop.SetDebug();
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| 269 | calloop.SetEnvDebug(debug);
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| 270 | if (useIntensity)
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| 271 | calloop.SetIntensity();
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| 272 | // calloop.SetHistsStorage();
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| 273 | calloop.SetNoStorage(!usestorage);
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| 274 | //
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| 275 | // If you want to set a colour explicitely from outside (not recommanded!)
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| 276 | // calloop.SetColor(MCalibrationCam::kUV);
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| 277 | //
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| 278 | // If you want to run the data-check on RAW DATA!!!, choose:
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| 279 | // calloop.SetDataCheck();
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| 280 | //
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| 281 | // If you want to see the data-check plots only, choose:
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| 282 | calloop.SetDataCheckDisplay();
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| 283 | //calloop.SetNormalDisplay();
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| 284 | //
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| 285 | // For everything, you have ever dreamed of, choose:
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| 286 | // calloop.SetFullDisplay();
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| 287 |
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| 288 | //
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| 289 | // If you want to calibrate the times as well, choose:
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| 290 | //
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| 291 | calloop.SetRelTimeCalibration(useTimes);
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| 292 | calloop.SetExtractor(&extractor);
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| 293 | calloop.SetTimeAndCharge(useTimeAndCharge);
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| 294 | calloop.SetTimeExtractor(&timeext);
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| 295 | calloop.SetInput(&cruns);
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| 296 | calloop.SetPathOut(outpath.Data());
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| 297 | if (useDisplay)
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| 298 | calloop.SetDisplay(display);
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| 299 | calloop.SetUseBlindPixel(blindpix);
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| 300 | calloop.SetUsePINDiode(pindiode);
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| 301 | calloop.SetQECam(qecam);
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| 302 | calloop.SetBadPixels(pedloop.GetBadPixels());
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| 303 |
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| 304 | if (!calloop.Process(pedloop.GetPedestalCam()))
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| 305 | return 2;
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| 306 |
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| 307 | //
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| 308 | // The next lines are the use the Print() function and have
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| 309 | // all the results as ascii-tables:
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| 310 | //
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| 311 | if (debug)
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| 312 | {
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| 313 | MCalibrationChargeCam &chargecam = calloop.GetCalibrationCam();
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| 314 | MCalibrationQECam &nqecam = calloop.GetQECam();
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| 315 | MBadPixelsCam &badbad = calloop.GetBadPixels();
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| 316 | chargecam.Print();
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| 317 | nqecam.Print();
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| 318 | badbad.Print();
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| 319 | }
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| 320 |
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| 321 | /********************************************************************/
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| 322 | /* THIRD LOOP: APPLY CALIBRATION TO THE CALIBRATION FILES FOR TESTS */
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| 323 | /********************************************************************/
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| 324 |
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| 325 | if (useTest)
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| 326 | {
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| 327 |
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| 328 | MJExtractCalibTest testloop;
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| 329 |
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| 330 | // If you want to see the data-check plots only, choose:
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| 331 | testloop.SetDataCheckDisplay();
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| 332 |
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| 333 | testloop.SetExtractor(&extractor);
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| 334 | testloop.SetTimeExtractor(&timeext);
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| 335 | testloop.SetInput(&cruns);
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| 336 | testloop.SetPathOut(outpath);
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| 337 | if (useDisplay)
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| 338 | testloop.SetDisplay(display);
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| 339 | testloop.SetBadPixels(calloop.GetBadPixels());
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| 340 |
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| 341 | if (!testloop.ProcessD(pedloop.GetPedestalCam(),calloop.GetCalibrationCam(),calloop.GetQECam()))
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| 342 | return 3;
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| 343 |
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| 344 | if (useTimes)
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| 345 | if (!testloop.ProcessT(pedloop.GetPedestalCam(),calloop.GetRelTimeCam()))
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| 346 | return 4;
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| 347 |
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| 348 | }
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| 349 |
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| 350 | /********************************************************************/
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| 351 | /* FOURTH LOOP: APPLY CALIBRATION TO THE PEDESTAL FILES */
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| 352 | /********************************************************************/
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| 353 |
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| 354 | MJExtractSignal pedphotloop;
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| 355 |
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| 356 | pedphotloop.SetExtractor(&extractor);
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| 357 | pedphotloop.SetTimeExtractor(&timeext);
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| 358 | pedphotloop.SetInput(&pruns);
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| 359 | pedphotloop.SetOutputPath(outpath);
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| 360 | if (useDisplay)
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| 361 | pedphotloop.SetDisplay(display);
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| 362 | pedphotloop.SetBadPixels(calloop.GetBadPixels());
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| 363 |
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| 364 | if (!pedphotloop.ProcessP(pedloop.GetPedestalCam(),calloop.GetCalibrationCam(),calloop.GetQECam()))
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| 365 | return 5;
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| 366 |
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| 367 | if (debug)
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| 368 | TObject::SetObjectStat(kFALSE);
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| 369 |
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| 370 | //
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| 371 | // Debugging at the end:
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| 372 | //
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| 373 | if (debug)
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| 374 | gObjectTable->Print();
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| 375 |
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| 376 | return 0;
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| 377 |
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| 378 | }
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| 379 |
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| 380 | static void Usage()
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| 381 | {
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| 382 | gLog << endl;
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| 383 | gLog << "Usage:" << endl;
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| 384 | gLog << endl;
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| 385 | gLog << " calibration [ped.run nr.] [first cal.run nr.] [last cal.run nr.]" << endl ;
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| 386 | gLog << endl;
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| 387 | gLog << " ped.run.nr: Run number of the pedestal file." << endl;
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| 388 | gLog << " first cal.run nr.: Run number of the first calibration file." << endl;
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| 389 | gLog << " last cal.run nr.: Run number of the last calibration file." << endl;
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| 390 | gLog << endl;
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| 391 | gLog << "All calibration runs between (first cal.run nr.) and (last cal.run nr.) will be used" << endl;
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| 392 | gLog << "If last.cal.run.nr is 0 (default), only one calibration run is taken" << endl;
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| 393 | gLog << endl;
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| 394 | gLog << "Additional Options: " << endl;
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| 395 | gLog << " --inpath=# Find the data in inpath" << endl;
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| 396 | gLog << " --outpath=# Write the output containers to outpath" << endl;
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| 397 | gLog << " --badfile=# Use the file # to exclude pixels from the beginning" << endl;
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| 398 | gLog << " --debug Use the TObjectTable for debugging " << endl;
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| 399 | gLog << " and write out the pixels as ascii tables" << endl;
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| 400 | gLog << " --useTimes Calibrate the relative arrival times" << endl;
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| 401 | gLog << " --useTest Use the class MJExtractCalibTest to test the calibration on itself" << endl;
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| 402 | gLog << " --skipBlindPix Skip the blind pixel calibration" << endl;
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| 403 | gLog << " --skipPINDiode Skip the PIN Diode calibration" << endl;
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| 404 | }
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| 405 |
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| 406 |
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| 407 | int main(int argc, char **argv)
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| 408 | {
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| 409 | //
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| 410 | // Evaluate arguments
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| 411 | //
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| 412 | MArgs arg(argc, argv);
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| 413 |
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| 414 | if (arg.HasOnly("-?") || arg.HasOnly("-h") || arg.HasOnly("--help"))
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| 415 | {
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| 416 | Usage();
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| 417 | return -1;
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| 418 | }
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| 419 |
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| 420 | debug = arg.HasOnlyAndRemove("--debug") || arg.HasOnlyAndRemove("-d");
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| 421 | useTimes = arg.HasOnlyAndRemove("--useTimes") || arg.HasOnlyAndRemove("-t");
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| 422 | useTest = arg.HasOnlyAndRemove("--useTest") || arg.HasOnlyAndRemove("-e");
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| 423 | blindpix = !(arg.HasOnlyAndRemove("--skipBlindPix"));
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| 424 | pindiode = !(arg.HasOnlyAndRemove("--skipPINDiode"));
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| 425 |
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| 426 | if (arg.HasOption("--inpath="))
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| 427 | inpath = arg.GetStringAndRemove("--inpath=");
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| 428 |
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| 429 | if (arg.HasOption("--outpath="))
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| 430 | outpath = arg.GetStringAndRemove("--outpath=");
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| 431 |
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| 432 | if (arg.HasOption("--badfile="))
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| 433 | badfile = arg.GetStringAndRemove("--badfile=");
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| 434 |
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| 435 | if (gSystem->AccessPathName(badfile,kFileExists))
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| 436 | {
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| 437 | gLog << "WARNING: the bad pixels file '" << badfile.Data() << "' doesn't exist." << endl;
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| 438 | badfile = "";
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| 439 | }
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| 440 |
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| 441 | // check for the right usage of the program
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| 442 | //
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| 443 | if (arg.GetNumArguments()>4)
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| 444 | {
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| 445 | Usage();
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| 446 | return -1;
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| 447 | }
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| 448 |
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| 449 | //
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| 450 | // Initialize Non-GUI (batch) mode
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| 451 | //
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| 452 | gROOT->SetBatch();
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| 453 |
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| 454 | //
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| 455 | // Switch off the display
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| 456 | //
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| 457 | useDisplay = kFALSE;
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| 458 |
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| 459 |
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| 460 | //
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| 461 | // check for the arguments
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| 462 | //
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| 463 | Int_t pedr = 0;
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| 464 | Int_t calr1 = 0;
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| 465 | Int_t calr2 = 0;
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| 466 |
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| 467 | const Int_t nargs = arg.GetNumArguments();
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| 468 |
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| 469 | if (nargs>=3)
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| 470 | {
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| 471 | pedr = arg.GetArgumentInt(0);
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| 472 | calr1 = arg.GetArgumentInt(1);
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| 473 | calr2 = arg.GetArgumentInt(2);
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| 474 | return calibration(pedr,calr1,calr2);
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| 475 | }
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| 476 |
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| 477 | if (nargs>=2)
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| 478 | {
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| 479 | pedr = arg.GetArgumentInt(0);
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| 480 | calr1 = arg.GetArgumentInt(1);
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| 481 | return calibration(pedr,calr1);
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| 482 | }
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| 483 |
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| 484 | if (nargs>=1)
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| 485 | {
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| 486 | pedr = arg.GetArgumentInt(0);
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| 487 | gLog << "PEDR: " << pedr << endl;
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| 488 | return calibration(pedr);
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| 489 | }
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| 490 |
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| 491 | return calibration();
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| 492 | }
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