source: trunk/MagicSoft/Mars/macros/calibration.C@ 5778

Last change on this file since 5778 was 5764, checked in by gaug, 20 years ago
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1/* ======================================================================== *\
2!
3! *
4! * This file is part of MARS, the MAGIC Analysis and Reconstruction
5! * Software. It is distributed to you in the hope that it can be a useful
6! * and timesaving tool in analysing Data of imaging Cerenkov telescopes.
7! * It is distributed WITHOUT ANY WARRANTY.
8! *
9! * Permission to use, copy, modify and distribute this software and its
10! * documentation for any purpose is hereby granted without fee,
11! * provided that the above copyright notice appear in all copies and
12! * that both that copyright notice and this permission notice appear
13! * in supporting documentation. It is provided "as is" without express
14! * or implied warranty.
15! *
16!
17!
18! Author(s): Markus Gaug, 11/2003 <mailto:markus@ifae.es>
19!
20! Copyright: MAGIC Software Development, 2000-2004
21!
22!
23\* ======================================================================== */
24/////////////////////////////////////////////////////////////////////////////
25//
26// calibration.C
27//
28// Needs as arguments the run number of a calibration file ("*_C_*.root") and
29// the run number of the corresponding pedestal file ("*_P_*.root").
30//
31// The TString inpath has to be set correctly.
32//
33// The macro searches for the pulser colour which corresponds to the calibration
34// run number. If the run number is smaller than 20000, pulser colour "CT1"
35// is assumed, otherwise, it searches for the strings "green", "blue", "uv" or
36// "ct1" in the filenames. If no colour or multiple colours are found, the
37// execution is aborted.
38//
39// The container MBadPixelsCam is created and followed during the execution of the
40// rest of the macro.
41//
42// A first loop over the pedestal file is performed using the class MJPedestal
43//
44// The container MCalibrationQECam is created and followed during the execution of the
45// rest of the macro.
46//
47// A loop over the calibration files is performed using the class MJCalibration.
48// The results are displayed using the MJCalibration::SetNormalDisplay() facility,
49// but other displays can easily be uncommented.
50// The call to MJCalibration skips the relative time calibration, which can be
51// uncommented as well.
52//
53// Last, a third loop is performed over the calibration file again in order to
54// "calibrate" it and test the resulting outcome.
55//
56//////////////////////////////////////////////////////////////////////////////////////////
57#include <TStyle.h>
58#include <TObject.h>
59#include <TObjectTable.h>
60#include <TCanvas.h>
61#include <TPad.h>
62#include <TH1.h>
63#include <TPaveStats.h>
64#include <TApplication.h>
65#include <TClass.h>
66
67#include "getExtractor.C"
68
69#include "MJPedestal.h"
70#include "MJCalibration.h"
71#include "MJExtractCalibTest.h"
72#include "MJCalibrateSignalFromOutside.h"
73#include "MRunIter.h"
74#include "MStatusDisplay.h"
75#include "MCalibrationQECamMagic.h"
76#include "MCalibrationQECam.h"
77#include "MBadPixelsCam.h"
78#include "MArgs.h"
79#include "MArray.h"
80#include "MParContainer.h"
81#include "MGeomCamMagic.h"
82
83using namespace std;
84
85static TString outpath = "./";
86static TString inpath = "/home/rootdata/Calib/2004_09_22";
87static TString badfile;
88//static TString badfile = "badpixels_only0_388_559.dat";
89//
90// the default pedestal run for the calibration
91//
92static const Int_t pedrun = 38995;
93//
94// the default start calibration run
95//
96static const Int_t calrun1 = 38997;
97//
98// the default last calibration run (if 0, only one run is taken, otherwise consecutive runs
99// between calrun1 and calrun2)
100//
101static const Int_t calrun2 = 0;
102//
103// the default start data run
104//
105static const Int_t datrun1 = 39000;
106//
107// the default last calibration run (if 0, only one run is taken, otherwise consecutive runs
108// between calrun1 and calrun2)
109//
110static const Int_t datrun2 = 0;
111//
112// A switch to output debugging information about Objects use
113//
114static Bool_t debug = kFALSE;
115//
116// A switch to use the Blind Pixel
117//
118static Bool_t blindpix = kTRUE;
119//
120// A switch to use the PIN Diode
121//
122static Bool_t pindiode = kTRUE;
123//
124// Tell if you want to use the display:
125//
126static Bool_t useDisplay = kTRUE;
127//
128// Tell if you want to test the result afterwards
129//
130static Bool_t useTest = kFALSE;
131//
132// Tell if you want to test the intensity calibration
133//
134static Bool_t useIntensity = kFALSE;
135//
136// Tell if you want to store and read the F0 and F1- files
137//
138static Bool_t useStorage = kTRUE;
139//
140// Tell which extractor you want to use. The flags are counted according
141// to the extractor-TDAS
142//
143static Int_t extractorflag = 33;
144//
145Int_t calibration(const UInt_t extflag=extractorflag, const Int_t prun=pedrun,
146 const Int_t crun1=calrun1, const Int_t crun2=calrun2,
147 const Int_t drun1=datrun1, const Int_t drun2=datrun2)
148{
149
150 MExtractor *extractor = getExtractor(extflag==33 ? 32 : extflag);
151
152 if (!extractor)
153 return 99;
154
155 extractor->SetName(Form("%s_Run_%05d",extractor->GetName(),prun));
156 const Bool_t timeandcharge = extractor->InheritsFrom("MExtractTimeAndCharge");
157
158 gStyle->SetOptStat(1111);
159 gStyle->SetOptFit();
160 gStyle->SetTitleSize(0.35,"u");
161 gStyle->SetTitleFontSize(0.9);
162 gStyle->SetTitleH(0.12);
163 gStyle->SetTitleW(0.95);
164 gStyle->SetLineWidth(1);
165
166 if (debug)
167 TObject::SetObjectStat(kTRUE);
168
169 MRunIter pruns;
170 MRunIter cruns;
171
172 pruns.AddRun(prun,inpath);
173
174 if (crun1!=0)
175 if (crun2==0)
176 cruns.AddRun(crun1,inpath);
177 else
178 cruns.AddRuns(crun1,crun2,inpath);
179
180 MStatusDisplay *display = NULL;
181
182 if (useDisplay)
183 {
184 display = new MStatusDisplay;
185 display->SetUpdateTime(3000);
186 display->Resize(850,700);
187 }
188
189 /*****************************************/
190 /* FIRST LOOP: PURE PEDESTAL COMPUTATION */
191 /*****************************************/
192 //
193 // Hand over to the jobs a QE Cam with Cornings initialized
194 //
195 MGeomCamMagic geomcam;
196 MCalibrationQECamMagic qecam;
197 MBadPixelsCam badcam;
198 badcam.InitSize(geomcam.GetNumPixels());
199 //
200 // If you want to exclude pixels from the beginning, read
201 // an ascii-file with the corr. pixel numbers (see MBadPixelsCam)
202 //
203 if (!badfile.IsNull())
204 {
205 ifstream f(badfile.Data());
206 badcam.AsciiRead((istream&)f);
207 f.close();
208 }
209
210 MJPedestal pedloop1;
211 pedloop1.SetNoStorage(!useStorage);
212 pedloop1.SetEnvDebug(debug);
213 pedloop1.SetExtractor(extractor);
214 pedloop1.SetInput(&pruns);
215 pedloop1.SetPathOut(outpath.Data());
216 if (useDisplay)
217 {
218 pedloop1.SetDisplay(display);
219 pedloop1.SetDataCheckDisplay();
220 }
221 pedloop1.SetBadPixels(badcam);
222
223 if (!pedloop1.Process())
224 return 1;
225
226 /****************************************/
227 /* SECOND LOOP: CALIBRATION COMPUTATION */
228 /****************************************/
229
230 MJPedestal pedloop2;
231 MJCalibration calloop;
232
233 if (timeandcharge)
234 {
235 /***********************************************************/
236 /* NEEDED FOR SECOND LOOP: EXTRACTOR RESOLUTION COMPUTATION */
237 /***********************************************************/
238
239 pedloop2.SetUseData();
240 pedloop2.SetNoStorage(!useStorage);
241 pedloop2.SetEnvDebug(debug);
242 pedloop2.SetExtractor(extractor);
243 pedloop2.SetExtractorResolution();
244 pedloop2.SetPedestals(pedloop1.GetPedestalCam());
245 pedloop2.SetInput(&pruns);
246 pedloop2.SetPathOut(outpath.Data());
247 if (useDisplay)
248 {
249 pedloop2.SetDisplay(display);
250 pedloop2.SetDataCheckDisplay();
251 }
252 pedloop2.SetBadPixels(badcam);
253
254 if (!pedloop2.Process())
255 return 1;
256
257 calloop.SetExtractorCam(pedloop2.GetPedestalCam());
258 }
259
260 if (crun1 == 0)
261 return 0;
262
263 MPedestalCam &pedcam = pedloop1.GetPedestalCam();
264
265 if (debug)
266 calloop.SetDebug();
267 calloop.SetEnvDebug(debug);
268 if (useIntensity)
269 calloop.SetIntensity();
270 // calloop.SetHistsStorage();
271 calloop.SetNoStorage(!useStorage);
272 calloop.SetRelTimeCalibration(kTRUE);
273 //
274 // If you want to set a colour explicitely from outside (not recommanded!)
275 // calloop.SetColor(MCalibrationCam::kUV);
276 //
277 // If you want to run the data-check on RAW DATA!!!, choose:
278 // calloop.SetDataCheck();
279 //
280 // If you want to see the data-check plots only, choose:
281 calloop.SetDataCheckDisplay();
282 //calloop.SetNormalDisplay();
283 //
284 // For everything, you have ever dreamed of, choose:
285 // calloop.SetFullDisplay();
286
287 //
288 // If you want to calibrate the times as well, choose:
289 //
290 calloop.SetExtractor(extractor);
291 calloop.SetInput(&cruns);
292 calloop.SetPathOut(outpath.Data());
293 if (useDisplay)
294 calloop.SetDisplay(display);
295 calloop.SetUseBlindPixel(blindpix);
296 calloop.SetUsePINDiode(pindiode);
297 calloop.SetQECam(qecam);
298 calloop.SetBadPixels(badcam);
299
300 if (!calloop.Process(pedcam))
301 return 2;
302
303 //
304 // The next lines are the use the Print() function and have
305 // all the results as ascii-tables:
306 //
307 if (debug)
308 {
309 MCalibrationQECam &nqecam = calloop.GetQECam();
310 MBadPixelsCam &badbad = calloop.GetBadPixels();
311 MCalibrationChargeCam &chargecam = calloop.GetCalibrationCam();
312 chargecam.Print();
313 nqecam.Print();
314 badbad.Print();
315 }
316
317 /********************************************************************/
318 /* THIRD LOOP: APPLY CALIBRATION TO THE CALIBRATION FILES FOR TESTS */
319 /********************************************************************/
320
321 if (useTest)
322 {
323
324 MJExtractCalibTest testloop;
325
326 // If you want to see the data-check plots only, choose:
327 testloop.SetDataCheckDisplay();
328
329 testloop.SetExtractor(extractor);
330 testloop.SetInput(&cruns);
331 testloop.SetPathOut(outpath);
332 if (useDisplay)
333 testloop.SetDisplay(display);
334 testloop.SetBadPixels(calloop.GetBadPixels());
335
336 if (!testloop.ProcessD(pedloop1.GetPedestalCam(),calloop.GetCalibrationCam(),calloop.GetQECam()))
337 return 3;
338
339 }
340
341 if (drun1 == 0)
342 return 4;
343
344 MRunIter druns;
345
346 if (drun2==0)
347 druns.AddRun(drun1,inpath);
348 else
349 druns.AddRuns(drun1,drun2,inpath);
350
351
352 /********************************************************************/
353 /* FOURTH LOOP: APPLY CALIBRATION TO THE PEDESTAL FILES */
354 /********************************************************************/
355
356 if (extflag == 33)
357 {
358 delete extractor;
359 extractor = getExtractor(28);
360 }
361
362 MJCalibrateSignalFromOutside calibloop;
363
364 calibloop.SetExtractor(extractor);
365 calibloop.SetInput(&druns);
366 // calibloop.SetOutputPath(outpath);
367 if (useDisplay)
368 calibloop.SetDisplay(display);
369 calibloop.SetBadPixels(calloop.GetBadPixels());
370 calibloop.SetNoStorage(!useStorage);
371
372 if (!calibloop.ProcessFile(pedloop1.GetPedestalCam(),timeandcharge ? pedloop2.GetPedestalCam() : pedloop1.GetPedestalCam(), calloop.GetCalibrationCam(),calloop.GetQECam(), calloop.GetRelTimeCam()))
373 return 5;
374
375 if (debug)
376 TObject::SetObjectStat(kFALSE);
377
378 //
379 // Debugging at the end:
380 //
381 if (debug)
382 gObjectTable->Print();
383
384
385 return 0;
386}
387
388static void Usage()
389{
390 gLog << endl;
391 gLog << "Usage:" << endl;
392 gLog << endl;
393 gLog << " calibration [ped.run nr.] [first cal.run nr.] [last cal.run nr.] [first dat.run nr.] [last dat.run nr.]" << endl ;
394 gLog << endl;
395 gLog << " ped.run.nr: Run number of the pedestal file." << endl;
396 gLog << " first cal.run nr.: Run number of the first calibration file." << endl;
397 gLog << " last cal.run nr.: Run number of the last calibration file." << endl;
398 gLog << " first dat.run nr.: Run number of the first data file to be calibrated." << endl;
399 gLog << " last dat.run nr.: Run number of the last data file to be calibrated." << endl;
400 gLog << endl;
401 gLog << "All calibration runs between (first cal.run nr.) and (last cal.run nr.) will be used" << endl;
402 gLog << "If last.cal.run.nr is 0 (default), only one calibration run is taken" << endl;
403 gLog << endl;
404 gLog << "All data runs between (first dat.run nr.) and (last dat.run nr.) will be used" << endl;
405 gLog << "If last.dat.run.nr is 0 (default), only one data run is taken" << endl;
406 gLog << endl;
407 gLog << "Additional Options: " << endl;
408 gLog << " --extractor=# Choose one of the following possible extractors (integer)" << endl;
409 gLog << " (default: Nr. 33) " << endl;
410 gLog << endl;
411 gLog << " Nr. Extractor Parameters " << endl;
412 gLog << endl;
413 gLog << " MExtractFixedWindow: " << endl;
414 gLog << " with the following parameters: " << endl;
415 gLog << " 1: SetRange(4,7,6,9) " << endl;
416 gLog << " 2: SetRange(4,7,5,10)" << endl;
417 gLog << " 3: SetRange(3,8,5,10)" << endl;
418 gLog << " 4: SetRange(2,9,4,11)" << endl;
419 gLog << " 5: SetRange(0,13,4,13)" << endl;
420 gLog << " MExtractFixedWindowSpline: " << endl;
421 gLog << " 6: SetRange(3,7,5,9)" << endl;
422 gLog << " 7: SetRange(3,7,5,11)" << endl;
423 gLog << " 8: SetRange(3,9,5,11)" << endl;
424 gLog << " 9: SetRange(2,10,4,12)" << endl;
425 gLog << " 10: SetRange(0,14,4,14)" << endl;
426 gLog << " MExtractFixedWindowPeakSearch: " << endl;
427 gLog << " SetRange(0,18,2,14) and the following parameters:" << endl;
428 gLog << " 11: SetWindows(2,2,2)" << endl;
429 gLog << " SetOffsetFromWindow(0)" << endl;
430 gLog << " 12: SetWindows(4,4,2)" << endl;
431 gLog << " SetOffsetFromWindow(1)" << endl;
432 gLog << " 13: SetWindows(4,6,4)" << endl;
433 gLog << " SetOffsetFromWindow(0)" << endl;
434 gLog << " 14: SetWindows(6,6,4)" << endl;
435 gLog << " SetOffsetFromWindow(1)" << endl;
436 gLog << " 15: SetWindows(8,8,4)" << endl;
437 gLog << " SetOffsetFromWindow(1)" << endl;
438 gLog << " 16: SetWindows(14,10,4)" << endl;
439 gLog << " SetOffsetFromWindow(2)" << endl;
440 gLog << " MExtractTimeAndChargeSlidingWindow:" << endl;
441 gLog << " SetRange(0,18,2,14) and the following parameters:" << endl;
442 gLog << " 17: SetWindowSize(2,2)" << endl;
443 gLog << " 18: SetWindowSize(4,4)" << endl;
444 gLog << " 19: SetWindowSize(4,6)" << endl;
445 gLog << " 20: SetWindowSize(6,6)" << endl;
446 gLog << " 21: SetWindowSize(8,8)" << endl;
447 gLog << " 22: SetWindowSize(14,10)" << endl;
448 gLog << " MExtractTimeAndChargeSpline: " << endl;
449 gLog << " 23: SetChargeType(MExtractTimeAndChargeSpline::kAmplitude) and:" << endl;
450 gLog << " SetRange(0,13,2,13) " << endl;
451 gLog << " 24: SetChargeType(MExtractTimeAndChargeSpline::kIntegral) and:" << endl;
452 gLog << " SetRiseTime(0.5); SetFallTime(0.5)" << endl;
453 gLog << " 25: SetRiseTime(0.5); SetFallTime(1.5)" << endl;
454 gLog << " 26: SetRiseTime(1.0); SetFallTime(3.0)" << endl;
455 gLog << " 27 SetRiseTime(1.5); SetFallTime(4.5)" << endl;
456 gLog << " MExtractTimeAndChargeDigitalFilter" << endl;
457 gLog << " SetRange(0,18,2,14) and the following parameters:" << endl;
458 gLog << " 28: SetNameWeightsFile('msignal/cosmics_weights.dat')" << endl;
459 gLog << " 29: SetNameWeightsFile('msignal/cosmics_weights4.dat')" << endl;
460 gLog << " 30: SetNameWeightsFile('msignal/cosmics_weights_logain6.dat')" << endl;
461 gLog << " 31: SetNameWeightsFile('msignal/cosmics_weights_logain4.dat')" << endl;
462 gLog << " 32: SetNameWeightsFile('msignal/calibration_weights_UV.dat')" << endl;
463 gLog << " 33: Use calibration weights for calibration events and cosmics weights for data events" << endl;
464 gLog << endl;
465 gLog << " --inpath=# Find the data in inpath" << endl;
466 gLog << " --outpath=# Write the output containers to outpath" << endl;
467 gLog << " --badfile=# Use the file # to exclude pixels from the beginning" << endl;
468 gLog << " --debug Use the TObjectTable for debugging " << endl;
469 gLog << " and write out the pixels as ascii tables" << endl;
470 gLog << " --useTest Use the class MJExtractCalibTest to test the calibration on itself" << endl;
471 gLog << " --skipBlindPix Skip the blind pixel calibration" << endl;
472 gLog << " --skipPINDiode Skip the PIN Diode calibration" << endl;
473}
474
475
476int main(int argc, char **argv)
477{
478
479
480 MArray::Class()->IgnoreTObjectStreamer();
481 MParContainer::Class()->IgnoreTObjectStreamer();
482 //
483 // Evaluate arguments
484 //
485 MArgs arg(argc, argv);
486
487 if (arg.HasOnly("-?") || arg.HasOnly("-h") || arg.HasOnly("--help"))
488 {
489 Usage();
490 return -1;
491 }
492
493 debug = arg.HasOnlyAndRemove("--debug") || arg.HasOnlyAndRemove("-d");
494 useTest = arg.HasOnlyAndRemove("--useTest") || arg.HasOnlyAndRemove("-e");
495 blindpix = !(arg.HasOnlyAndRemove("--skipBlindPix"));
496 pindiode = !(arg.HasOnlyAndRemove("--skipPINDiode"));
497
498 if (arg.HasOption("--extractor="))
499 extractorflag = arg.GetIntAndRemove("--extractor=");
500
501 if (arg.HasOption("--inpath="))
502 inpath = arg.GetStringAndRemove("--inpath=");
503
504 if (arg.HasOption("--outpath="))
505 outpath = arg.GetStringAndRemove("--outpath=");
506
507 if (arg.HasOption("--badfile="))
508 badfile = arg.GetStringAndRemove("--badfile=");
509
510 if (gSystem->AccessPathName(badfile,kFileExists))
511 {
512 gLog << "WARNING: the bad pixels file '" << badfile.Data() << "' doesn't exist." << endl;
513 badfile = "";
514 }
515
516 // check for the right usage of the program
517 //
518 if (arg.GetNumArguments()>6)
519 {
520 Usage();
521 return -1;
522 }
523
524 //
525 // Initialize Non-GUI (batch) mode
526 //
527 gROOT->SetBatch();
528
529 //
530 // Switch off the display
531 //
532 useDisplay = kTRUE;
533 //
534 // check for the arguments
535 //
536 Int_t pedr = 0;
537 Int_t calr1 = 0;
538 Int_t calr2 = 0;
539 Int_t datr1 = 0;
540 Int_t datr2 = 0;
541
542 const Int_t nargs = arg.GetNumArguments();
543
544 if (nargs>=5)
545 {
546 pedr = arg.GetArgumentInt(0);
547 calr1 = arg.GetArgumentInt(1);
548 calr2 = arg.GetArgumentInt(2);
549 datr1 = arg.GetArgumentInt(3);
550 datr2 = arg.GetArgumentInt(4);
551 return calibration(extractorflag,pedr,calr1,calr2,datr1,datr2);
552 }
553
554 if (nargs>=4)
555 {
556 pedr = arg.GetArgumentInt(0);
557 calr1 = arg.GetArgumentInt(1);
558 calr2 = arg.GetArgumentInt(2);
559 datr1 = arg.GetArgumentInt(3);
560 datr2 = arg.GetArgumentInt(4);
561 return calibration(extractorflag,pedr,calr1,calr2,datr1,0);
562 }
563
564 if (nargs>=3)
565 {
566 pedr = arg.GetArgumentInt(0);
567 calr1 = arg.GetArgumentInt(1);
568 calr2 = arg.GetArgumentInt(2);
569 return calibration(extractorflag,pedr,calr1,calr2,0);
570 }
571
572 if (nargs>=2)
573 {
574 pedr = arg.GetArgumentInt(0);
575 calr1 = arg.GetArgumentInt(1);
576 gLog << "PEDR: " << pedr << " CALR1: " << calr1 << " CALR2 " << calr2 << endl;
577 gLog << "inpath: " << inpath << endl;
578 gLog << "extractor: " << extractorflag << endl;
579 return calibration(extractorflag,pedr,calr1,0,0);
580 }
581
582 if (nargs>=1)
583 {
584 pedr = arg.GetArgumentInt(0);
585 return calibration(extractorflag,pedr,0);
586 }
587
588 return calibration(extractorflag,pedr,calr1,calr2);
589}
590
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