/* ======================================================================== *\
!
! *
! * This file is part of MARS, the MAGIC Analysis and Reconstruction
! * Software. It is distributed to you in the hope that it can be a useful
! * and timesaving tool in analysing Data of imaging Cerenkov telescopes.
! * It is distributed WITHOUT ANY WARRANTY.
! *
! * Permission to use, copy, modify and distribute this software and its
! * documentation for any purpose is hereby granted without fee,
! * provided that the above copyright notice appear in all copies and
! * that both that copyright notice and this permission notice appear
! * in supporting documentation. It is provided "as is" without express
! * or implied warranty.
! *
!
!
!   Author(s): Markus Gaug, 11/2003 <mailto:markus@ifae.es>
!
!   Copyright: MAGIC Software Development, 2000-2003
!
!
\* ======================================================================== */

void calibration(TString pedname="/mnt/Data/rootdata/Miscellaneous/2003_12_19/20031218_03522_P_Park_E.root",
                 TString calname="/mnt/Data/rootdata/Miscellaneous/2003_12_19/20031218_03527_C_Park_E.root")
{

    //
    // Create a empty Parameter List and an empty Task List
    // The tasklist is identified in the eventloop by its name
    //
    MParList  plist;

    MTaskList tlist;
    plist.AddToList(&tlist);

    //
    // Now setup the tasks and tasklist for the pedestals:
    // ---------------------------------------------------
    //

    MReadMarsFile read("Events", pedname);
    read.DisableAutoScheme();

    MGeomApply     geomapl;
    MPedCalcPedRun pedcalc;
    MGeomCamMagic  geomcam;
    MPedestalCam   pedcam;

    tlist.AddToList(&read);
    tlist.AddToList(&geomapl);
    tlist.AddToList(&pedcalc);

    plist.AddToList(&pedcam);

    MHCamEvent hist("Pedestal");
    hist.SetType(0);
    plist.AddToList(&hist);
    MFillH fill(&hist, "MPedestalCam");

    tlist.AddToList(&fill);

    MStatusDisplay *d1 = new MStatusDisplay;

    //Set update time to 3s
    d1->SetUpdateTime(3000);
 
    //
    // Create and setup the eventloop
    //
    MEvtLoop evtloop;
    evtloop.SetParList(&plist);
    evtloop.SetDisplay(d1);  	

    //
    // Execute first analysis
    //
    if (!evtloop.Eventloop())
        return;

    tlist.PrintStatistics();


    //
    // Create a empty Parameter List and an empty Task List
    //
    MParList  plist2;

    MTaskList tlist2;
    plist2.AddToList(&tlist2);


    plist2.AddToList((MPedestalCam*)plist.FindObject("MPedestalCam"));

    tlist2.AddToList(&geomapl);

    //
    // Now setup the new tasks and tasklist for the calibration
    // ---------------------------------------------------
    //

    MReadMarsFile read2("Events", calname);
    read2.DisableAutoScheme();

    MExtractSignal        sigsig;
    MCalibrationCalc     calcalc;
    MExtractedSignalCam   sigcam;

    plist2.AddToList(&geomcam);
    plist2.AddToList(&sigcam);

    //
    // As long, as we don't have digital modules, 
    // we have to set the color of the pulser LED by hand
    //
    calcalc.SetPulserColor(MCalibrationCalc::kECT1);

    tlist2.AddToList(&read2);
    tlist2.AddToList(&sigsig);
    tlist2.AddToList(&calcalc);

    //
    // Create and setup the eventloop
    //
    MEvtLoop evtloop2;
    evtloop2.SetParList(&plist2);

    //
    // Execute second analysis
    //
    if (!evtloop2.Eventloop())
        return;

    tlist2.PrintStatistics();

    //
    // just one example how to get the plots of individual pixels
    //
    MCalibrationCam *cam = plist2.FindObject("MCalibrationCam");
    cam.Print();

    MHCamEvent camevt;
    MHCamera disp1   (geomcam, "MCalibrationPix;Charge", "Fitted Mean Charges");
    MHCamera disp3   (geomcam, "MCalibrationPix;SigmaCharge", "Sigma of Fitted Charges");
    MHCamera disp5   (geomcam, "MCalibrationPix;ChargeProb", "Probability of Fit");
    MHCamera disp6   (geomcam, "MCalibrationPix;Time", "Arrival Times");
    MHCamera disp7   (geomcam, "MCalibrationPix;SigmaTime", "Sigma of Arrival Times");
    MHCamera disp8   (geomcam, "MCalibrationPix;TimeChiSquare", "Chi Square of Time Fit");
    MHCamera disp9   (geomcam, "MCalibrationPix;Ped", "Pedestals");
    MHCamera disp10  (geomcam, "MCalibrationPix;PedRms", "Pedestal RMS");
    MHCamera disp11  (geomcam, "MCalibrationPix;RSigma", "Reduced Sigmas");
    MHCamera disp12  (geomcam, "MCalibrationPix;PheFFactorMethod", "Nr. of Phe's (F-Factor Method)");
    MHCamera disp13  (geomcam, "MCalibrationPix;MeanConversionFFactorMethod", "Conversion Factor (F-Factor Method)");
    MHCamera disp14  (geomcam, "MCalibrationPix;MeanPhotInsidePlexiglass", "Nr. of Photons (Blind Pixel Method)");
    MHCamera disp15  (geomcam, "MCalibrationPix;MeanConversionBlindPixelMethod", "Conversion Factor (Blind Pixel Method)");
    MHCamera disp16  (geomcam, "MCalibrationPix;RSigma/Charge", "Reduced Sigma per Charge");

    disp1.SetCamContent(*cam, 0);
    disp1.SetCamError(*cam,1);

    disp3.SetCamContent(*cam, 2);
    disp3.SetCamError(*cam,3);

    disp5.SetCamContent(*cam, 4);

    disp6.SetCamContent(*cam, 5);
    disp6.SetCamError(*cam, 6);
    disp7.SetCamContent(*cam, 6);
    disp8.SetCamContent(*cam, 7);

    disp9.SetCamContent(*cam, 8);
    disp9.SetCamError(*cam, 9);
    disp10.SetCamContent(*cam, 9);

    disp11.SetCamContent(*cam, 10);

    disp12.SetCamContent(*cam, 11);
    disp12.SetCamError(*cam, 12);

    disp13.SetCamContent(*cam, 13);
    disp13.SetCamError(*cam, 14);

    disp14.SetCamContent(*cam, 15);
    disp15.SetCamContent(*cam, 16);
    disp16.SetCamContent(*cam, 17);


    disp1.SetYTitle("Charge [FADC counts]");
    //    disp2.SetYTitle("\\Delta Q [FADC counts]");
    disp3.SetYTitle("\\sigma_{Charge} [FADC counts]");
    //    disp4.SetYTitle("\\Delta {\\sigma_{Q}} [FADC counts]");
    disp5.SetYTitle("P_{Charge} [1]");
    disp6.SetYTitle("Arr. Time [Time Slice Nr.]");
    disp7.SetYTitle("\\sigma_{Time} [Time Slices]");
    disp8.SetYTitle("\\chi^{2}_{Time} [1]");
    disp9.SetYTitle("Ped [FADC Counts ]");
    disp10.SetYTitle("RMS_{Ped} [FADC Counts ]");
    disp11.SetYTitle("\\sqrt{\\sigma^{2}_{Charge} - RMS^{2}_{Ped}} [FADC Counts]");
    disp12.SetYTitle("Nr. Photo-Electrons [1]");
    disp13.SetYTitle("Conversion Factor [PhE/FADC Count]");
    disp14.SetYTitle("Nr. Photons [1]");
    disp15.SetYTitle("Conversion Factor [Phot/FADC Count]");
    disp16.SetYTitle("Reduced Sigma / Charge [1]");

    MStatusDisplay *d3 = new MStatusDisplay;
    d3->SetUpdateTime(3000);
    d3->Resize(1180,900);

    gStyle->SetOptStat(1111);
    gStyle->SetOptFit();
    
    // Charges
    TCanvas *c1 = &d3->AddTab("Fitted Charges"); 
    c1->Divide(2,3);

    TObject *obj1;
    TObject *obj2;

    c1->cd(1);
    obj1=disp1.DrawCopy("hist");
    ((MHCamera*)obj1)->AddNotify(*cam);

    c1->cd(3);
    gPad->SetBorderMode(0);
    obj1->Draw();
    ((MHCamera*)obj1)->SetPrettyPalette();

    c1->cd(5);
    gPad->SetBorderMode(0);
    obj2 = obj1->DrawClone("proj");
    gPad->Update();
    ((MHCamera*)obj2)->GetYProj()->Fit("gaus","Q");
    ((MHCamera*)obj2)->GetYProj()->GetFunction("gaus")->SetLineColor(kYellow);

    c1->cd(2);
    obj1=disp3.DrawCopy("hist");
    ((MHCamera*)obj1)->AddNotify(*cam);

    c1->cd(4);
    gPad->SetBorderMode(0);
    obj1->Draw();
    ((MHCamera*)obj1)->SetPrettyPalette();

    c1->cd(6);
    gPad->SetBorderMode(0);
    obj2 = obj1->DrawClone("proj");
    gPad->Update();
    ((MHCamera*)obj2)->GetYProj()->Fit("gaus","Q");
    ((MHCamera*)obj2)->GetYProj()->GetFunction("gaus")->SetLineColor(kYellow);

    // Fit Probability
    TCanvas *c12 = &d3->AddTab("Fit Prob."); 
    c12->Divide(1, 3);

    c12->cd(1);
    obj1=disp5.DrawCopy("hist");
    ((MHCamera*)obj1)->AddNotify(*cam);

    c12->cd(2);
    gPad->SetBorderMode(0);
    obj1->Draw();
    ((MHCamera*)obj1)->SetPrettyPalette();
    
    c12->cd(3);
    gPad->SetBorderMode(0);
    obj2 = obj1->DrawClone("proj");
    gPad->Update();
    ((MHCamera*)obj2)->GetYProj()->Fit("pol0","Q");
    ((MHCamera*)obj2)->GetYProj()->GetFunction("pol0")->SetLineColor(kYellow);

    // Times
    TCanvas *c2 = &d3->AddTab("Fitted Times");
    c2->Divide(3, 3);

    c2->cd(1);
    obj1=disp6.DrawCopy("hist");
    ((MHCamera*)obj1)->AddNotify(*cam);

    c2->cd(4);
    obj1->Draw();
    ((MHCamera*)obj1)->SetPrettyPalette();
    
    c2->cd(7);
    gPad->SetBorderMode(0);
    obj2 = obj1->DrawClone("proj");
    gPad->Update();
    ((MHCamera*)obj2)->GetYProj()->Fit("gaus","Q");
    ((MHCamera*)obj2)->GetYProj()->GetFunction("gaus")->SetLineColor(kYellow);

    c2->cd(2);
    obj1=disp7.DrawCopy("hist");
    ((MHCamera*)obj1)->AddNotify(*cam);

    c2->cd(5);
    obj1->Draw();
    ((MHCamera*)obj1)->SetPrettyPalette();

    c2->cd(8);
    gPad->SetBorderMode(0);
    obj2 = obj1->DrawClone("proj");
    gPad->Update();
    ((MHCamera*)obj2)->GetYProj()->Fit("gaus","Q");
    ((MHCamera*)obj2)->GetYProj()->GetFunction("gaus")->SetLineColor(kYellow);

    c2->cd(3);
    obj1=disp8.DrawCopy("hist");
    ((MHCamera*)obj1)->AddNotify(*cam);

    c2->cd(6);
    obj1->Draw();
    ((MHCamera*)obj1)->SetPrettyPalette();
    
    c2->cd(9);
    gPad->SetBorderMode(0);
    obj2 = obj1->DrawClone("proj");
    gPad->Update();
    ((MHCamera*)obj2)->GetYProj()->Fit("gaus","Q");
    ((MHCamera*)obj2)->GetYProj()->GetFunction("gaus")->SetLineColor(kYellow);

    // Pedestals
    TCanvas *c3 = &d3->AddTab("Pedestals");
    c3->Divide(2, 3);

    c3->cd(1);
    obj1=disp9.DrawCopy("hist");
    ((MHCamera*)obj1)->AddNotify(*cam);

    c3->cd(3);
    obj1->Draw();
    ((MHCamera*)obj1)->SetPrettyPalette();
    
    c3->cd(5);
    gPad->SetBorderMode(0);
    obj2 = obj1->DrawClone("proj");
    gPad->Update();
    ((MHCamera*)obj2)->GetYProj()->Fit("gaus","Q");
    ((MHCamera*)obj2)->GetYProj()->GetFunction("gaus")->SetLineColor(kYellow);

    c3->cd(2);
    obj1=disp10.DrawCopy("hist");
    ((MHCamera*)obj1)->AddNotify(*cam);

    c3->cd(4);
    obj1->Draw();
    ((MHCamera*)obj1)->SetPrettyPalette();

    c3->cd(6);
    gPad->SetBorderMode(0);
    obj2 = obj1->DrawClone("proj");
    gPad->Update();
    ((MHCamera*)obj2)->GetYProj()->Fit("gaus","Q");
    ((MHCamera*)obj2)->GetYProj()->GetFunction("gaus")->SetLineColor(kYellow);    

    // Reduced Sigmas
    TCanvas *c4 = &d3->AddTab("Reduced Sigmas");
    c4->Divide(2,3);

    c4->cd(1);
    obj1=disp11.DrawCopy("hist");
    ((MHCamera*)obj1)->AddNotify(*cam);

    c4->cd(3);
    obj1->Draw();
    ((MHCamera*)obj1)->SetPrettyPalette();
    
    c4->cd(5);
    gPad->SetBorderMode(0);
    obj2 = obj1->DrawClone("proj");
    gPad->Update();
    ((MHCamera*)obj2)->GetYProj()->Fit("gaus","Q");
    ((MHCamera*)obj2)->GetYProj()->GetFunction("gaus")->SetLineColor(kYellow);

    c4->cd(2);
    obj1=disp16.DrawCopy("hist");
    ((MHCamera*)obj1)->AddNotify(*cam);

    c4->cd(4);
    obj1->Draw();
    ((MHCamera*)obj1)->SetPrettyPalette();
    
    c4->cd(6);
    gPad->SetBorderMode(0);
    obj2 = obj1->DrawClone("proj");
    gPad->Update();
    ((MHCamera*)obj2)->GetYProj()->Fit("gaus","Q");
    ((MHCamera*)obj2)->GetYProj()->GetFunction("gaus")->SetLineColor(kYellow);

    // F-Factor Method
    TCanvas *c5 = &d3->AddTab("F-Factor Method");
    c5->Divide(2, 3);

    c5->cd(1);
    obj1=disp12.DrawCopy("hist");
    ((MHCamera*)obj1)->AddNotify(*cam);

    c5->cd(3);
    obj1->Draw();
    ((MHCamera*)obj1)->SetPrettyPalette();
    
    c5->cd(5);
    gPad->SetBorderMode(0);
    obj2 = obj1->DrawClone("proj");
    gPad->Update();
    ((MHCamera*)obj2)->GetYProj()->Fit("gaus","Q");
    ((MHCamera*)obj2)->GetYProj()->GetFunction("gaus")->SetLineColor(kYellow);

    c5->cd(2);
    obj1=disp13.DrawCopy("hist");
    ((MHCamera*)obj1)->AddNotify(*cam);

    c5->cd(4);
    obj1->Draw();
    ((MHCamera*)obj1)->SetPrettyPalette();
    
    c5->cd(6);
    gPad->SetBorderMode(0);
    obj2 = obj1->DrawClone("proj");
    gPad->Update();
    ((MHCamera*)obj2)->GetYProj()->Fit("gaus","Q");
    ((MHCamera*)obj2)->GetYProj()->GetFunction("gaus")->SetLineColor(kYellow);

    // Blind Pixel Method
    TCanvas *c6 = &d3->AddTab("Blind Pixel Method");
    c6->Divide(2, 3);

    c6->cd(1);
    obj1=disp14.DrawCopy("hist");
    ((MHCamera*)obj1)->AddNotify(*cam);

    c6->cd(3);
    obj1->Draw();
    ((MHCamera*)obj1)->SetPrettyPalette();
    

    c6->cd(2);
    obj1=disp15.DrawCopy("hist");
    ((MHCamera*)obj1)->AddNotify(*cam);

    c6->cd(4);
    obj1->Draw();
    ((MHCamera*)obj1)->SetPrettyPalette();
    
    c6->cd(6);
    gPad->SetBorderMode(0);
    obj2 = obj1->DrawClone("proj");
    gPad->Update();
    ((MHCamera*)obj2)->GetYProj()->Fit("gaus","Q");
    ((MHCamera*)obj2)->GetYProj()->GetFunction("gaus")->SetLineColor(kYellow);
}