source: trunk/MagicSoft/Mars/macros/calibration.C@ 5830

Last change on this file since 5830 was 5811, checked in by gaug, 20 years ago
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1/* ======================================================================== *\
2!
3! *
4! * This file is part of MARS, the MAGIC Analysis and Reconstruction
5! * Software. It is distributed to you in the hope that it can be a useful
6! * and timesaving tool in analysing Data of imaging Cerenkov telescopes.
7! * It is distributed WITHOUT ANY WARRANTY.
8! *
9! * Permission to use, copy, modify and distribute this software and its
10! * documentation for any purpose is hereby granted without fee,
11! * provided that the above copyright notice appear in all copies and
12! * that both that copyright notice and this permission notice appear
13! * in supporting documentation. It is provided "as is" without express
14! * or implied warranty.
15! *
16!
17!
18! Author(s): Markus Gaug, 11/2003 <mailto:markus@ifae.es>
19!
20! Copyright: MAGIC Software Development, 2000-2004
21!
22!
23\* ======================================================================== */
24/////////////////////////////////////////////////////////////////////////////
25//
26// calibration.C
27//
28// Needs as arguments the run number of a calibration file ("*_C_*.root") and
29// the run number of the corresponding pedestal file ("*_P_*.root").
30//
31// The TString inpath has to be set correctly.
32//
33// The macro searches for the pulser colour which corresponds to the calibration
34// run number. If the run number is smaller than 20000, pulser colour "CT1"
35// is assumed, otherwise, it searches for the strings "green", "blue", "uv" or
36// "ct1" in the filenames. If no colour or multiple colours are found, the
37// execution is aborted.
38//
39// The container MBadPixelsCam is created and followed during the execution of the
40// rest of the macro.
41//
42// A first loop over the pedestal file is performed using the class MJPedestal
43//
44// The container MCalibrationQECam is created and followed during the execution of the
45// rest of the macro.
46//
47// A loop over the calibration files is performed using the class MJCalibration.
48// The results are displayed using the MJCalibration::SetNormalDisplay() facility,
49// but other displays can easily be uncommented.
50// The call to MJCalibration skips the relative time calibration, which can be
51// uncommented as well.
52//
53// Last, a third loop is performed over the calibration file again in order to
54// "calibrate" it and test the resulting outcome.
55//
56//////////////////////////////////////////////////////////////////////////////////////////
57#include <TStyle.h>
58#include <TObject.h>
59#include <TObjectTable.h>
60#include <TCanvas.h>
61#include <TPad.h>
62#include <TH1.h>
63#include <TPaveStats.h>
64#include <TApplication.h>
65#include <TClass.h>
66
67#include "getExtractor.C"
68
69#include "MJPedestal.h"
70#include "MJCalibration.h"
71#include "MJExtractCalibTest.h"
72#include "MJCalibrateSignalFromOutside.h"
73#include "MRunIter.h"
74#include "MStatusDisplay.h"
75#include "MCalibrationQECamMagic.h"
76#include "MCalibrationQECam.h"
77#include "MBadPixelsCam.h"
78#include "MArgs.h"
79#include "MArray.h"
80#include "MParContainer.h"
81#include "MGeomCamMagic.h"
82
83using namespace std;
84
85static TString outpath = "./";
86static TString inpath = "/home/rootdata/Calib/2004_09_22";
87static TString badfile;
88//static TString badfile = "badpixels_only0_388_559.dat";
89//
90// the default pedestal run for the calibration
91//
92static const Int_t pedrun = 38995;
93//
94// the default start calibration run
95//
96static const Int_t calrun1 = 38997;
97//
98// the default last calibration run (if 0, only one run is taken, otherwise consecutive runs
99// between calrun1 and calrun2)
100//
101static const Int_t calrun2 = 0;
102//
103// the default start data run
104//
105static const Int_t datrun1 = 39000;
106//
107// the default last calibration run (if 0, only one run is taken, otherwise consecutive runs
108// between calrun1 and calrun2)
109//
110static const Int_t datrun2 = 0;
111//
112// A switch to output debugging information about Objects use
113//
114static Bool_t debug = kFALSE;
115//
116// A switch to use the Blind Pixel
117//
118static Bool_t blindpix = kTRUE;
119//
120// A switch to use the PIN Diode
121//
122static Bool_t pindiode = kTRUE;
123//
124// Tell if you want to use the display:
125//
126static Bool_t useDisplay = kTRUE;
127//
128// Tell if you want to test the result afterwards
129//
130static Bool_t useTest = kFALSE;
131//
132// Tell if you want to test the intensity calibration
133//
134static Bool_t useIntensity = kFALSE;
135//
136// Tell if you want to store and read the F0 and F1- files
137//
138static Bool_t useStorage = kTRUE;
139//
140// Tell which extractor you want to use. The flags are counted according
141// to the extractor-TDAS
142//
143static Int_t extractorflag = 33;
144//
145Int_t calibration(const UInt_t extflag=extractorflag, const Int_t prun=pedrun,
146 const Int_t crun1=calrun1, const Int_t crun2=calrun2,
147 const Int_t drun1=datrun1, const Int_t drun2=datrun2)
148{
149
150 MExtractor *extractor = getExtractor(extflag==33 ? 32 : extflag);
151
152 if (!extractor)
153 return 99;
154
155 extractor->SetName(Form("%s_Run_%05d",extractor->GetName(),prun));
156 const Bool_t timeandcharge = extractor->InheritsFrom("MExtractTimeAndCharge");
157
158 gStyle->SetOptStat(1111);
159 gStyle->SetOptFit();
160 gStyle->SetTitleSize(0.35,"u");
161 gStyle->SetTitleFontSize(0.9);
162 gStyle->SetTitleH(0.12);
163 gStyle->SetTitleW(0.95);
164 gStyle->SetLineWidth(1);
165
166 if (debug)
167 TObject::SetObjectStat(kTRUE);
168
169 MRunIter pruns;
170 MRunIter cruns;
171
172 pruns.AddRun(prun,inpath);
173
174 if (crun1!=0)
175 if (crun2==0)
176 cruns.AddRun(crun1,inpath);
177 else
178 cruns.AddRuns(crun1,crun2,inpath);
179
180 MStatusDisplay *display = NULL;
181
182 if (useDisplay)
183 {
184 display = new MStatusDisplay;
185 display->SetUpdateTime(3000);
186 display->Resize(850,700);
187 }
188
189 /*****************************************/
190 /* FIRST LOOP: PURE PEDESTAL COMPUTATION */
191 /*****************************************/
192 //
193 // Hand over to the jobs a QE Cam with Cornings initialized
194 //
195 MGeomCamMagic geomcam;
196 MCalibrationQECamMagic qecam;
197 MBadPixelsCam badcam;
198 badcam.InitSize(geomcam.GetNumPixels());
199 //
200 // If you want to exclude pixels from the beginning, read
201 // an ascii-file with the corr. pixel numbers (see MBadPixelsCam)
202 //
203 if (!badfile.IsNull())
204 {
205 ifstream f(badfile.Data());
206 badcam.AsciiRead((istream&)f);
207 f.close();
208 }
209
210 MJPedestal pedloop1;
211 pedloop1.SetNoStorage(!useStorage);
212 pedloop1.SetEnvDebug(debug);
213 pedloop1.SetExtractor(extractor);
214 pedloop1.SetExtractionFundamental();
215 pedloop1.SetInput(&pruns);
216 pedloop1.SetPathOut(outpath.Data());
217 if (useDisplay)
218 {
219 pedloop1.SetDisplay(display);
220 pedloop1.SetDataCheckDisplay();
221 }
222 pedloop1.SetBadPixels(badcam);
223
224 if (!pedloop1.Process())
225 return 1;
226
227 /****************************************/
228 /* SECOND LOOP: CALIBRATION COMPUTATION */
229 /****************************************/
230
231 MJPedestal pedloop2;
232 MJCalibration calloop;
233
234 if (timeandcharge)
235 {
236 /***********************************************************/
237 /* NEEDED FOR SECOND LOOP: EXTRACTOR RESOLUTION COMPUTATION */
238 /***********************************************************/
239
240 pedloop2.SetUseData();
241 pedloop2.SetNoStorage(!useStorage);
242 pedloop2.SetEnvDebug(debug);
243 pedloop2.SetExtractor(extractor);
244 pedloop2.SetExtractionWithExtractorRndm();
245 pedloop2.SetPedestals(pedloop1.GetPedestalCam());
246 pedloop2.SetInput(&pruns);
247 pedloop2.SetPathOut(outpath.Data());
248 if (useDisplay)
249 {
250 pedloop2.SetDisplay(display);
251 pedloop2.SetDataCheckDisplay();
252 }
253 pedloop2.SetBadPixels(badcam);
254
255 if (!pedloop2.Process())
256 return 1;
257
258 calloop.SetExtractorCam(pedloop2.GetPedestalCam());
259 }
260
261 if (crun1 == 0)
262 return 0;
263
264 MPedestalCam &pedcam = pedloop1.GetPedestalCam();
265
266 if (debug)
267 calloop.SetDebug();
268 calloop.SetEnvDebug(debug);
269 if (useIntensity)
270 calloop.SetIntensity();
271 // calloop.SetHistsStorage();
272 calloop.SetNoStorage(!useStorage);
273 calloop.SetRelTimeCalibration(kTRUE);
274 //
275 // If you want to set a colour explicitely from outside (not recommanded!)
276 // calloop.SetColor(MCalibrationCam::kUV);
277 //
278 // If you want to run the data-check on RAW DATA!!!, choose:
279 // calloop.SetDataCheck();
280 //
281 // If you want to see the data-check plots only, choose:
282 calloop.SetDataCheckDisplay();
283 //calloop.SetNormalDisplay();
284 //
285 // For everything, you have ever dreamed of, choose:
286 // calloop.SetFullDisplay();
287
288 //
289 // If you want to calibrate the times as well, choose:
290 //
291 calloop.SetExtractor(extractor);
292 calloop.SetInput(&cruns);
293 calloop.SetPathOut(outpath.Data());
294 if (useDisplay)
295 calloop.SetDisplay(display);
296 calloop.SetUseBlindPixel(blindpix);
297 calloop.SetUsePINDiode(pindiode);
298 calloop.SetQECam(qecam);
299 calloop.SetBadPixels(badcam);
300
301 if (!calloop.Process(pedcam))
302 return 2;
303
304 //
305 // The next lines are the use the Print() function and have
306 // all the results as ascii-tables:
307 //
308 if (debug)
309 {
310 MCalibrationQECam &nqecam = calloop.GetQECam();
311 MBadPixelsCam &badbad = calloop.GetBadPixels();
312 MCalibrationChargeCam &chargecam = calloop.GetCalibrationCam();
313 chargecam.Print();
314 nqecam.Print();
315 badbad.Print();
316 }
317
318 /********************************************************************/
319 /* THIRD LOOP: APPLY CALIBRATION TO THE CALIBRATION FILES FOR TESTS */
320 /********************************************************************/
321
322 if (useTest)
323 {
324
325 MJExtractCalibTest testloop;
326
327 // If you want to see the data-check plots only, choose:
328 testloop.SetDataCheckDisplay();
329
330 testloop.SetExtractor(extractor);
331 testloop.SetInput(&cruns);
332 testloop.SetPathOut(outpath);
333 if (useDisplay)
334 testloop.SetDisplay(display);
335 testloop.SetBadPixels(calloop.GetBadPixels());
336
337 if (!testloop.ProcessD(pedloop1.GetPedestalCam(),calloop.GetCalibrationCam(),calloop.GetQECam()))
338 return 3;
339
340 }
341
342 if (drun1 == 0)
343 return 4;
344
345 MRunIter druns;
346
347 if (drun2==0)
348 druns.AddRun(drun1,inpath);
349 else
350 druns.AddRuns(drun1,drun2,inpath);
351
352
353 /********************************************************************/
354 /* FOURTH LOOP: APPLY CALIBRATION TO THE PEDESTAL FILES */
355 /********************************************************************/
356
357 if (extflag == 33)
358 {
359 delete extractor;
360 extractor = getExtractor(28);
361 }
362
363 MJCalibrateSignalFromOutside calibloop;
364
365 calibloop.SetExtractor(extractor);
366 calibloop.SetInput(&druns);
367 // calibloop.SetOutputPath(outpath);
368 if (useDisplay)
369 calibloop.SetDisplay(display);
370 calibloop.SetBadPixels(calloop.GetBadPixels());
371 calibloop.SetNoStorage(!useStorage);
372
373 if (!calibloop.ProcessFile(pedloop1.GetPedestalCam(),timeandcharge ? pedloop2.GetPedestalCam() : pedloop1.GetPedestalCam(), calloop.GetCalibrationCam(),calloop.GetQECam(), calloop.GetRelTimeCam()))
374 return 5;
375
376 if (debug)
377 TObject::SetObjectStat(kFALSE);
378
379 //
380 // Debugging at the end:
381 //
382 if (debug)
383 gObjectTable->Print();
384
385
386 return 0;
387}
388
389static void Usage()
390{
391 gLog << endl;
392 gLog << "Usage:" << endl;
393 gLog << endl;
394 gLog << " calibration [ped.run nr.] [first cal.run nr.] [last cal.run nr.] [first dat.run nr.] [last dat.run nr.]" << endl ;
395 gLog << endl;
396 gLog << " ped.run.nr: Run number of the pedestal file." << endl;
397 gLog << " first cal.run nr.: Run number of the first calibration file." << endl;
398 gLog << " last cal.run nr.: Run number of the last calibration file." << endl;
399 gLog << " first dat.run nr.: Run number of the first data file to be calibrated." << endl;
400 gLog << " last dat.run nr.: Run number of the last data file to be calibrated." << endl;
401 gLog << endl;
402 gLog << "All calibration runs between (first cal.run nr.) and (last cal.run nr.) will be used" << endl;
403 gLog << "If last.cal.run.nr is 0 (default), only one calibration run is taken" << endl;
404 gLog << endl;
405 gLog << "All data runs between (first dat.run nr.) and (last dat.run nr.) will be used" << endl;
406 gLog << "If last.dat.run.nr is 0 (default), only one data run is taken" << endl;
407 gLog << endl;
408 gLog << "Additional Options: " << endl;
409 gLog << " --extractor=# Choose one of the following possible extractors (integer)" << endl;
410 gLog << " (default: Nr. 33) " << endl;
411 gLog << endl;
412 gLog << " Nr. Extractor Parameters " << endl;
413 gLog << endl;
414 gLog << " MExtractFixedWindow: " << endl;
415 gLog << " with the following parameters: " << endl;
416 gLog << " 1: SetRange(4,7,6,9) " << endl;
417 gLog << " 2: SetRange(4,7,5,10)" << endl;
418 gLog << " 3: SetRange(3,8,5,10)" << endl;
419 gLog << " 4: SetRange(2,9,4,11)" << endl;
420 gLog << " 5: SetRange(0,13,4,13)" << endl;
421 gLog << " MExtractFixedWindowSpline: " << endl;
422 gLog << " 6: SetRange(3,7,5,9)" << endl;
423 gLog << " 7: SetRange(3,7,5,11)" << endl;
424 gLog << " 8: SetRange(3,9,5,11)" << endl;
425 gLog << " 9: SetRange(2,10,4,12)" << endl;
426 gLog << " 10: SetRange(0,14,4,14)" << endl;
427 gLog << " MExtractFixedWindowPeakSearch: " << endl;
428 gLog << " SetRange(0,18,2,14) and the following parameters:" << endl;
429 gLog << " 11: SetWindows(2,2,2)" << endl;
430 gLog << " SetOffsetFromWindow(0)" << endl;
431 gLog << " 12: SetWindows(4,4,2)" << endl;
432 gLog << " SetOffsetFromWindow(1)" << endl;
433 gLog << " 13: SetWindows(4,6,4)" << endl;
434 gLog << " SetOffsetFromWindow(0)" << endl;
435 gLog << " 14: SetWindows(6,6,4)" << endl;
436 gLog << " SetOffsetFromWindow(1)" << endl;
437 gLog << " 15: SetWindows(8,8,4)" << endl;
438 gLog << " SetOffsetFromWindow(1)" << endl;
439 gLog << " 16: SetWindows(14,10,4)" << endl;
440 gLog << " SetOffsetFromWindow(2)" << endl;
441 gLog << " MExtractTimeAndChargeSlidingWindow:" << endl;
442 gLog << " SetRange(0,18,2,14) and the following parameters:" << endl;
443 gLog << " 17: SetWindowSize(2,2)" << endl;
444 gLog << " 18: SetWindowSize(4,4)" << endl;
445 gLog << " 19: SetWindowSize(4,6)" << endl;
446 gLog << " 20: SetWindowSize(6,6)" << endl;
447 gLog << " 21: SetWindowSize(8,8)" << endl;
448 gLog << " 22: SetWindowSize(14,10)" << endl;
449 gLog << " MExtractTimeAndChargeSpline: " << endl;
450 gLog << " 23: SetChargeType(MExtractTimeAndChargeSpline::kAmplitude) and:" << endl;
451 gLog << " SetRange(0,13,2,13) " << endl;
452 gLog << " 24: SetChargeType(MExtractTimeAndChargeSpline::kIntegral) and:" << endl;
453 gLog << " SetRiseTime(0.5); SetFallTime(0.5)" << endl;
454 gLog << " 25: SetRiseTime(0.5); SetFallTime(1.5)" << endl;
455 gLog << " 26: SetRiseTime(1.0); SetFallTime(3.0)" << endl;
456 gLog << " 27 SetRiseTime(1.5); SetFallTime(4.5)" << endl;
457 gLog << " MExtractTimeAndChargeDigitalFilter" << endl;
458 gLog << " SetRange(0,18,2,14) and the following parameters:" << endl;
459 gLog << " 28: SetNameWeightsFile('msignal/cosmics_weights.dat')" << endl;
460 gLog << " 29: SetNameWeightsFile('msignal/cosmics_weights4.dat')" << endl;
461 gLog << " 30: SetNameWeightsFile('msignal/cosmics_weights_logain6.dat')" << endl;
462 gLog << " 31: SetNameWeightsFile('msignal/cosmics_weights_logain4.dat')" << endl;
463 gLog << " 32: SetNameWeightsFile('msignal/calibration_weights_UV.dat')" << endl;
464 gLog << " 33: Use calibration weights for calibration events and cosmics weights for data events" << endl;
465 gLog << endl;
466 gLog << " --inpath=# Find the data in inpath" << endl;
467 gLog << " --outpath=# Write the output containers to outpath" << endl;
468 gLog << " --badfile=# Use the file # to exclude pixels from the beginning" << endl;
469 gLog << " --debug Use the TObjectTable for debugging " << endl;
470 gLog << " and write out the pixels as ascii tables" << endl;
471 gLog << " --useTest Use the class MJExtractCalibTest to test the calibration on itself" << endl;
472 gLog << " --skipBlindPix Skip the blind pixel calibration" << endl;
473 gLog << " --skipPINDiode Skip the PIN Diode calibration" << endl;
474}
475
476
477int main(int argc, char **argv)
478{
479
480
481 MArray::Class()->IgnoreTObjectStreamer();
482 MParContainer::Class()->IgnoreTObjectStreamer();
483 //
484 // Evaluate arguments
485 //
486 MArgs arg(argc, argv);
487
488 if (arg.HasOnly("-?") || arg.HasOnly("-h") || arg.HasOnly("--help"))
489 {
490 Usage();
491 return -1;
492 }
493
494 debug = arg.HasOnlyAndRemove("--debug") || arg.HasOnlyAndRemove("-d");
495 useTest = arg.HasOnlyAndRemove("--useTest") || arg.HasOnlyAndRemove("-e");
496 blindpix = !(arg.HasOnlyAndRemove("--skipBlindPix"));
497 pindiode = !(arg.HasOnlyAndRemove("--skipPINDiode"));
498
499 if (arg.HasOption("--extractor="))
500 extractorflag = arg.GetIntAndRemove("--extractor=");
501
502 if (arg.HasOption("--inpath="))
503 inpath = arg.GetStringAndRemove("--inpath=");
504
505 if (arg.HasOption("--outpath="))
506 outpath = arg.GetStringAndRemove("--outpath=");
507
508 if (arg.HasOption("--badfile="))
509 badfile = arg.GetStringAndRemove("--badfile=");
510
511 if (gSystem->AccessPathName(badfile,kFileExists))
512 {
513 gLog << "WARNING: the bad pixels file '" << badfile.Data() << "' doesn't exist." << endl;
514 badfile = "";
515 }
516
517 // check for the right usage of the program
518 //
519 if (arg.GetNumArguments()>6)
520 {
521 Usage();
522 return -1;
523 }
524
525 //
526 // Initialize Non-GUI (batch) mode
527 //
528 gROOT->SetBatch();
529
530 //
531 // Switch off the display
532 //
533 useDisplay = kTRUE;
534 //
535 // check for the arguments
536 //
537 Int_t pedr = 0;
538 Int_t calr1 = 0;
539 Int_t calr2 = 0;
540 Int_t datr1 = 0;
541 Int_t datr2 = 0;
542
543 const Int_t nargs = arg.GetNumArguments();
544
545 if (nargs>=5)
546 {
547 pedr = arg.GetArgumentInt(0);
548 calr1 = arg.GetArgumentInt(1);
549 calr2 = arg.GetArgumentInt(2);
550 datr1 = arg.GetArgumentInt(3);
551 datr2 = arg.GetArgumentInt(4);
552 return calibration(extractorflag,pedr,calr1,calr2,datr1,datr2);
553 }
554
555 if (nargs>=4)
556 {
557 pedr = arg.GetArgumentInt(0);
558 calr1 = arg.GetArgumentInt(1);
559 calr2 = arg.GetArgumentInt(2);
560 datr1 = arg.GetArgumentInt(3);
561 datr2 = arg.GetArgumentInt(4);
562 return calibration(extractorflag,pedr,calr1,calr2,datr1,0);
563 }
564
565 if (nargs>=3)
566 {
567 pedr = arg.GetArgumentInt(0);
568 calr1 = arg.GetArgumentInt(1);
569 calr2 = arg.GetArgumentInt(2);
570 return calibration(extractorflag,pedr,calr1,calr2,0);
571 }
572
573 if (nargs>=2)
574 {
575 pedr = arg.GetArgumentInt(0);
576 calr1 = arg.GetArgumentInt(1);
577 gLog << "PEDR: " << pedr << " CALR1: " << calr1 << " CALR2 " << calr2 << endl;
578 gLog << "inpath: " << inpath << endl;
579 gLog << "extractor: " << extractorflag << endl;
580 return calibration(extractorflag,pedr,calr1,0,0);
581 }
582
583 if (nargs>=1)
584 {
585 pedr = arg.GetArgumentInt(0);
586 return calibration(extractorflag,pedr,0);
587 }
588
589 return calibration(extractorflag,pedr,calr1,calr2);
590}
591
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