source: trunk/MagicSoft/Mars/macros/calibration.C@ 6276

Last change on this file since 6276 was 6249, checked in by gaug, 20 years ago
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1/* ======================================================================== *\
2!
3! *
4! * This file is part of MARS, the MAGIC Analysis and Reconstruction
5! * Software. It is distributed to you in the hope that it can be a useful
6! * and timesaving tool in analysing Data of imaging Cerenkov telescopes.
7! * It is distributed WITHOUT ANY WARRANTY.
8! *
9! * Permission to use, copy, modify and distribute this software and its
10! * documentation for any purpose is hereby granted without fee,
11! * provided that the above copyright notice appear in all copies and
12! * that both that copyright notice and this permission notice appear
13! * in supporting documentation. It is provided "as is" without express
14! * or implied warranty.
15! *
16!
17!
18! Author(s): Markus Gaug, 11/2003 <mailto:markus@ifae.es>
19!
20! Copyright: MAGIC Software Development, 2000-2004
21!
22!
23\* ======================================================================== */
24/////////////////////////////////////////////////////////////////////////////
25//
26// calibration.C
27//
28// Needs as arguments the run number of a calibration file ("*_C_*.root") and
29// the run number of the corresponding pedestal file ("*_P_*.root").
30//
31// The TString inpath has to be set correctly.
32//
33// The macro searches for the pulser colour which corresponds to the calibration
34// run number. If the run number is smaller than 20000, pulser colour "CT1"
35// is assumed, otherwise, it searches for the strings "green", "blue", "uv" or
36// "ct1" in the filenames. If no colour or multiple colours are found, the
37// execution is aborted.
38//
39// The container MBadPixelsCam is created and followed during the execution of the
40// rest of the macro.
41//
42// A first loop over the pedestal file is performed using the class MJPedestal
43//
44// The container MCalibrationQECam is created and followed during the execution of the
45// rest of the macro.
46//
47// A loop over the calibration files is performed using the class MJCalibration.
48// The results are displayed using the MJCalibration::SetNormalDisplay() facility,
49// but other displays can easily be uncommented.
50// The call to MJCalibration skips the relative time calibration, which can be
51// uncommented as well.
52//
53// Last, a third loop is performed over the calibration file again in order to
54// "calibrate" it and test the resulting outcome.
55//
56//////////////////////////////////////////////////////////////////////////////////////////
57#include <TStyle.h>
58#include <TObject.h>
59#include <TObjectTable.h>
60#include <TCanvas.h>
61#include <TPad.h>
62#include <TH1.h>
63#include <TPaveStats.h>
64#include <TApplication.h>
65#include <TClass.h>
66
67#include "getExtractor.C"
68
69#include "MJPedestal.h"
70#include "MJCalibration.h"
71#include "MJCalibTest.h"
72#include "MJCalibrateSignal.h"
73#include "MRunIter.h"
74#include "MStatusDisplay.h"
75#include "MCalibrationQECamMagic.h"
76#include "MCalibrationQECam.h"
77#include "MBadPixelsCam.h"
78#include "MArgs.h"
79#include "MArray.h"
80#include "MParContainer.h"
81#include "MGeomCamMagic.h"
82
83using namespace std;
84
85static TString outpath = ".";
86//static TString inpath = "/home/rootdata/Calib/2004_07_06";
87//static TString inpath = "/home/rootdata/Calib/2004_11_11";
88//static TString inpath = "/home/rootdata/Calib/2004_12_18";
89static TString inpath = "/home/rootdata/Calib/2004_09_21";
90static TString badfile;
91//static TString badfile = "badpixels_only0_388_559.dat";
92//
93// the default pedestal run for the calibration
94//
95//static const Int_t pedrun = 43915;
96static const Int_t pedrun = 38995;
97//
98// the default start calibration run
99//
100static const Int_t calrun1 = 38997;
101//
102// the default last calibration run (if 0, only one run is taken, otherwise consecutive runs
103// between calrun1 and calrun2)
104//
105static const Int_t calrun2 = 0;
106//
107// the default start data run
108//
109static const Int_t datrun1 = 39000;
110//
111// the default last calibration run (if 0, only one run is taken, otherwise consecutive runs
112// between calrun1 and calrun2)
113//
114static const Int_t datrun2 = 0;
115//
116// A switch to output debugging information about Objects use
117//
118static Bool_t debug = kFALSE;
119//
120// A switch to use the Blind Pixel
121//
122static Bool_t blindpix = kTRUE;
123//
124// A switch to use the PIN Diode
125//
126static Bool_t pindiode = kFALSE;
127//
128// Tell if you want to use the display:
129//
130static Bool_t useDisplay = kTRUE;
131//
132// Tell if you want to test the result afterwards
133//
134static Bool_t useTest = kTRUE;
135//
136// Tell if you want to test the intensity calibration
137//
138static Bool_t useIntensity = kFALSE;
139//
140// Tell if you to calibrated interlaced calibration events
141//
142static Bool_t useInterlaced = kTRUE;
143//
144// Tell if you want to store and read the F0 and F1- files
145//
146static Bool_t useStorage = kTRUE;
147//
148// Tell which extractor you want to use. The flags are counted according
149// to the extractor-TDAS
150//
151static Int_t extractorflag = 34;
152//
153Int_t calibration(const UInt_t extflag=extractorflag, const Int_t prun=pedrun,
154 const Int_t crun1=calrun1, const Int_t crun2=calrun2,
155 const Int_t drun1=datrun1, const Int_t drun2=datrun2)
156{
157
158 cout << extractorflag << endl;
159
160 MExtractor *extractor = getExtractor(extflag==33 ? 32 : extflag);
161
162 if (!extractor)
163 return 99;
164
165 extractor->SetName(Form("%s_Run_%05d",extractor->GetName(),prun));
166 const Bool_t timeandcharge = extractor->InheritsFrom("MExtractTimeAndCharge");
167
168 gStyle->SetOptStat(1111);
169 gStyle->SetOptFit();
170 gStyle->SetTitleSize(0.35,"u");
171 gStyle->SetTitleFontSize(0.9);
172 gStyle->SetTitleH(0.12);
173 gStyle->SetTitleW(0.95);
174 gStyle->SetLineWidth(1);
175
176 if (debug)
177 TObject::SetObjectStat(kTRUE);
178
179 MRunIter pruns;
180 MRunIter cruns;
181
182 pruns.AddRun(prun,inpath);
183
184 if (crun1!=0)
185 if (crun2==0)
186 cruns.AddRun(crun1,inpath);
187 else
188 cruns.AddRuns(crun1,crun2,inpath);
189
190 MStatusDisplay *display = NULL;
191
192 if (useDisplay)
193 {
194 display = new MStatusDisplay;
195 display->SetUpdateTime(3000);
196 display->Resize(850,700);
197 }
198
199 /*****************************************/
200 /* FIRST LOOP: PURE PEDESTAL COMPUTATION */
201 /*****************************************/
202 //
203 // Hand over to the jobs a QE Cam with Cornings initialized
204 //
205 MGeomCamMagic geomcam;
206 MCalibrationQECamMagic qecam;
207 MBadPixelsCam badcam;
208 badcam.InitSize(geomcam.GetNumPixels());
209 //
210 // If you want to exclude pixels from the beginning, read
211 // an ascii-file with the corr. pixel numbers (see MBadPixelsCam)
212 //
213 if (!badfile.IsNull())
214 {
215 ifstream f(badfile.Data());
216 badcam.AsciiRead((istream&)f);
217 f.close();
218 }
219
220 MJPedestal pedloop1;
221 pedloop1.SetNoStorage();
222 pedloop1.SetEnvDebug(debug);
223 pedloop1.SetExtractor(extractor);
224 pedloop1.SetExtractionFundamental();
225 pedloop1.SetInput(&pruns);
226 pedloop1.SetPathOut(outpath.Data());
227 if (useDisplay)
228 {
229 pedloop1.SetDisplay(display);
230 pedloop1.SetDataCheckDisplay();
231 }
232 pedloop1.SetBadPixels(badcam);
233
234 if (!pedloop1.Process())
235 return 1;
236
237 /****************************************/
238 /* SECOND LOOP: CALIBRATION COMPUTATION */
239 /****************************************/
240
241 MJPedestal pedloop2;
242 MJCalibration calloop;
243
244 if (timeandcharge)
245 {
246 /***********************************************************/
247 /* NEEDED FOR SECOND LOOP: EXTRACTOR RESOLUTION COMPUTATION */
248 /***********************************************************/
249
250 pedloop2.SetUseData();
251 pedloop2.SetNoStorage();
252 pedloop2.SetEnvDebug(debug);
253 pedloop2.SetExtractor(extractor);
254 pedloop2.SetExtractionWithExtractorRndm();
255 pedloop2.SetPedestals(pedloop1.GetPedestalCam());
256 pedloop2.SetInput(&pruns);
257 pedloop2.SetPathOut(outpath.Data());
258 if (useDisplay)
259 {
260 pedloop2.SetDisplay(display);
261 pedloop2.SetDataCheckDisplay();
262 }
263 pedloop2.SetBadPixels(badcam);
264
265 if (!pedloop2.Process())
266 return 1;
267
268 calloop.SetExtractorCam(pedloop2.GetPedestalCam());
269 }
270
271 if (crun1 == 0)
272 return 0;
273
274 MPedestalCam &pedcam = pedloop1.GetPedestalCam();
275
276 if (debug)
277 calloop.SetDebug();
278 calloop.SetEnvDebug(debug);
279 if (useIntensity)
280 calloop.SetIntensity();
281 // calloop.SetHistsStorage();
282 calloop.SetNoStorage(!useStorage);
283 calloop.SetRelTimeCalibration(kTRUE);
284 //
285 // If you want to set a colour explicitely from outside (not recommanded!)
286 // calloop.SetColor(MCalibrationCam::kUV);
287 //
288 // If you want to run the data-check on RAW DATA!!!, choose:
289 // calloop.SetDataCheck();
290 //
291 // If you want to see the data-check plots only, choose:
292 calloop.SetDataCheckDisplay();
293 //calloop.SetNormalDisplay();
294 //
295 // For everything, you have ever dreamed of, choose:
296 // calloop.SetFullDisplay();
297
298 //
299 // If you want to calibrate the times as well, choose:
300 //
301 calloop.SetExtractor(extractor);
302 calloop.SetInput(&cruns);
303 calloop.SetPathOut(outpath.Data());
304 if (useDisplay)
305 calloop.SetDisplay(display);
306 calloop.SetUseBlindPixel(blindpix);
307 calloop.SetUsePINDiode(pindiode);
308 calloop.SetQECam(qecam);
309 calloop.SetBadPixels(badcam);
310
311 if (!calloop.Process(pedcam))
312 return 2;
313
314 //
315 // The next lines are the use the Print() function and have
316 // all the results as ascii-tables:
317 //
318 if (debug)
319 {
320 MCalibrationQECam &nqecam = calloop.GetQECam();
321 MBadPixelsCam &badbad = calloop.GetBadPixels();
322 MCalibrationChargeCam &chargecam = calloop.GetCalibrationCam();
323 chargecam.Print();
324 nqecam.Print();
325 badbad.Print();
326 }
327
328 /********************************************************************/
329 /* THIRD LOOP: APPLY CALIBRATION TO THE CALIBRATION FILES FOR TESTS */
330 /********************************************************************/
331
332 if (useTest)
333 {
334
335 MJCalibTest testloop;
336
337 // If you want to see the data-check plots only, choose:
338 testloop.SetDataCheckDisplay();
339
340 testloop.SetExtractor(extractor);
341 testloop.SetInput(&cruns);
342 testloop.SetPathOut(outpath);
343 if (useDisplay)
344 testloop.SetDisplay(display);
345 testloop.SetBadPixels(calloop.GetBadPixels());
346
347 if (!testloop.ProcessFile(pedloop1.GetPedestalCam()))
348 return 3;
349
350 }
351
352 if (drun1 == 0)
353 return 4;
354
355 MRunIter druns;
356
357 if (drun2==0)
358 druns.AddRun(drun1,inpath);
359 else
360 druns.AddRuns(drun1,drun2,inpath);
361
362
363 /********************************************************************/
364 /* FOURTH LOOP: APPLY CALIBRATION TO THE PEDESTAL FILES */
365 /********************************************************************/
366
367 if (extflag == 33)
368 {
369 delete extractor;
370 extractor = getExtractor(28);
371 }
372
373 MJCalibrateSignal calibloop;
374
375 // calibloop.SetExtractor(extractor);
376 calibloop.SetInput(&druns);
377 calibloop.SetPathOut(outpath);
378 if (useDisplay)
379 calibloop.SetDisplay(display);
380 // calibloop.SetBadPixels(calloop.GetBadPixels());
381 // calibloop.SetNoStorage(!useStorage);
382 calibloop.SetInterlaced(useInterlaced);
383
384 if (!calibloop.ProcessFile(pedloop1.GetPedestalCam(),
385 timeandcharge ? pedloop2.GetPedestalCam() : pedloop1.GetPedestalCam(),
386 timeandcharge ? pedloop2.GetPedestalCam() : pedloop1.GetPedestalCam()))
387 return 5;
388
389 if (debug)
390 TObject::SetObjectStat(kFALSE);
391
392 //
393 // Debugging at the end:
394 //
395 if (debug)
396 gObjectTable->Print();
397
398 return 0;
399}
400
401static void Usage()
402{
403 gLog << endl;
404 gLog << "Usage:" << endl;
405 gLog << endl;
406 gLog << " calibration [ped.run nr.] [first cal.run nr.] [last cal.run nr.] [first dat.run nr.] [last dat.run nr.]" << endl ;
407 gLog << endl;
408 gLog << " ped.run.nr: Run number of the pedestal file." << endl;
409 gLog << " first cal.run nr.: Run number of the first calibration file." << endl;
410 gLog << " last cal.run nr.: Run number of the last calibration file." << endl;
411 gLog << " first dat.run nr.: Run number of the first data file to be calibrated." << endl;
412 gLog << " last dat.run nr.: Run number of the last data file to be calibrated." << endl;
413 gLog << endl;
414 gLog << "All calibration runs between (first cal.run nr.) and (last cal.run nr.) will be used" << endl;
415 gLog << "If last.cal.run.nr is 0 (default), only one calibration run is taken" << endl;
416 gLog << endl;
417 gLog << "All data runs between (first dat.run nr.) and (last dat.run nr.) will be used" << endl;
418 gLog << "If last.dat.run.nr is 0 (default), only one data run is taken" << endl;
419 gLog << endl;
420 gLog << "Additional Options: " << endl;
421 gLog << " --extractor=# Choose one of the following possible extractors (integer)" << endl;
422 gLog << " (default: Nr. 33) " << endl;
423 gLog << endl;
424 gLog << " Nr. Extractor Parameters " << endl;
425 gLog << endl;
426 gLog << " MExtractFixedWindow: " << endl;
427 gLog << " with the following parameters: " << endl;
428 gLog << " 1: SetRange(4,7,6,9) " << endl;
429 gLog << " 2: SetRange(4,7,5,10)" << endl;
430 gLog << " 3: SetRange(3,8,5,10)" << endl;
431 gLog << " 4: SetRange(2,9,4,11)" << endl;
432 gLog << " 5: SetRange(0,13,4,13)" << endl;
433 gLog << " MExtractFixedWindowSpline: " << endl;
434 gLog << " 6: SetRange(3,7,5,9)" << endl;
435 gLog << " 7: SetRange(3,7,5,11)" << endl;
436 gLog << " 8: SetRange(3,9,5,11)" << endl;
437 gLog << " 9: SetRange(2,10,4,12)" << endl;
438 gLog << " 10: SetRange(0,14,4,14)" << endl;
439 gLog << " MExtractFixedWindowPeakSearch: " << endl;
440 gLog << " SetRange(0,18,2,14) and the following parameters:" << endl;
441 gLog << " 11: SetWindows(2,2,2)" << endl;
442 gLog << " SetOffsetFromWindow(0)" << endl;
443 gLog << " 12: SetWindows(4,4,2)" << endl;
444 gLog << " SetOffsetFromWindow(1)" << endl;
445 gLog << " 13: SetWindows(4,6,4)" << endl;
446 gLog << " SetOffsetFromWindow(0)" << endl;
447 gLog << " 14: SetWindows(6,6,4)" << endl;
448 gLog << " SetOffsetFromWindow(1)" << endl;
449 gLog << " 15: SetWindows(8,8,4)" << endl;
450 gLog << " SetOffsetFromWindow(1)" << endl;
451 gLog << " 16: SetWindows(14,10,4)" << endl;
452 gLog << " SetOffsetFromWindow(2)" << endl;
453 gLog << " MExtractTimeAndChargeSlidingWindow:" << endl;
454 gLog << " SetRange(0,18,2,14) and the following parameters:" << endl;
455 gLog << " 17: SetWindowSize(2,2)" << endl;
456 gLog << " 18: SetWindowSize(4,4)" << endl;
457 gLog << " 19: SetWindowSize(4,6)" << endl;
458 gLog << " 20: SetWindowSize(6,6)" << endl;
459 gLog << " 21: SetWindowSize(8,8)" << endl;
460 gLog << " 22: SetWindowSize(14,10)" << endl;
461 gLog << " MExtractTimeAndChargeSpline: " << endl;
462 gLog << " 23: SetChargeType(MExtractTimeAndChargeSpline::kAmplitude) and:" << endl;
463 gLog << " SetRange(0,13,2,13) " << endl;
464 gLog << " 24: SetChargeType(MExtractTimeAndChargeSpline::kIntegral) and:" << endl;
465 gLog << " SetRiseTime(0.5); SetFallTime(0.5)" << endl;
466 gLog << " 25: SetRiseTime(0.5); SetFallTime(1.5)" << endl;
467 gLog << " 26: SetRiseTime(1.0); SetFallTime(3.0)" << endl;
468 gLog << " 27 SetRiseTime(1.5); SetFallTime(4.5)" << endl;
469 gLog << " MExtractTimeAndChargeDigitalFilter" << endl;
470 gLog << " SetRange(0,18,2,14) and the following parameters:" << endl;
471 gLog << " 28: SetNameWeightsFile('msignal/cosmics_weights.dat')" << endl;
472 gLog << " 29: SetNameWeightsFile('msignal/cosmics_weights4.dat')" << endl;
473 gLog << " 30: SetNameWeightsFile('msignal/cosmics_weights_logain6.dat')" << endl;
474 gLog << " 31: SetNameWeightsFile('msignal/cosmics_weights_logain4.dat')" << endl;
475 gLog << " 32: SetNameWeightsFile('msignal/calibration_weights_UV.dat')" << endl;
476 gLog << " 33: Use calibration weights for calibration events and cosmics weights for data events" << endl;
477 gLog << endl;
478 gLog << " --inpath=# Find the data in inpath" << endl;
479 gLog << " --outpath=# Write the output containers to outpath" << endl;
480 gLog << " --badfile=# Use the file # to exclude pixels from the beginning" << endl;
481 gLog << " --debug Use the TObjectTable for debugging " << endl;
482 gLog << " and write out the pixels as ascii tables" << endl;
483 gLog << " --useInterlaced Use the program to calibrate data with the interlaced cal. events" << endl;
484 gLog << " --useTest Use the class MJCalibTest to test the calibration on itself" << endl;
485 gLog << " --skipBlindPix Skip the blind pixel calibration" << endl;
486 gLog << " --skipPINDiode Skip the PIN Diode calibration" << endl;
487}
488
489
490int main(int argc, char **argv)
491{
492
493
494 MArray::Class()->IgnoreTObjectStreamer();
495 MParContainer::Class()->IgnoreTObjectStreamer();
496 //
497 // Evaluate arguments
498 //
499 MArgs arg(argc, argv);
500
501 if (arg.HasOnly("-?") || arg.HasOnly("-h") || arg.HasOnly("--help"))
502 {
503 Usage();
504 return -1;
505 }
506
507 debug = arg.HasOnlyAndRemove("--debug") || arg.HasOnlyAndRemove("-d");
508 useTest = arg.HasOnlyAndRemove("--useTest") || arg.HasOnlyAndRemove("-t");
509 useInterlaced = arg.HasOnlyAndRemove("--useInterlaced") || arg.HasOnlyAndRemove("-i");
510 blindpix = !(arg.HasOnlyAndRemove("--skipBlindPix"));
511 pindiode = !(arg.HasOnlyAndRemove("--skipPINDiode"));
512
513 if (arg.HasOption("--extractor="))
514 extractorflag = arg.GetIntAndRemove("--extractor=");
515
516 if (arg.HasOption("--inpath="))
517 inpath = arg.GetStringAndRemove("--inpath=");
518
519 if (arg.HasOption("--outpath="))
520 outpath = arg.GetStringAndRemove("--outpath=");
521
522 if (arg.HasOption("--badfile="))
523 badfile = arg.GetStringAndRemove("--badfile=");
524
525 if (gSystem->AccessPathName(badfile,kFileExists))
526 {
527 gLog << "WARNING: the bad pixels file '" << badfile.Data() << "' doesn't exist." << endl;
528 badfile = "";
529 }
530
531 // check for the right usage of the program
532 //
533 if (arg.GetNumArguments()>6)
534 {
535 Usage();
536 return -1;
537 }
538
539 //
540 // Initialize Non-GUI (batch) mode
541 //
542 gROOT->SetBatch();
543
544 //
545 // Switch off the display
546 //
547 useDisplay = kTRUE;
548 //
549 // check for the arguments
550 //
551 Int_t pedr = 0;
552 Int_t calr1 = 0;
553 Int_t calr2 = 0;
554 Int_t datr1 = 0;
555 Int_t datr2 = 0;
556
557 const Int_t nargs = arg.GetNumArguments();
558
559 if (nargs>=5)
560 {
561 pedr = arg.GetArgumentInt(0);
562 calr1 = arg.GetArgumentInt(1);
563 calr2 = arg.GetArgumentInt(2);
564 datr1 = arg.GetArgumentInt(3);
565 datr2 = arg.GetArgumentInt(4);
566 return calibration(extractorflag,pedr,calr1,calr2,datr1,datr2);
567 }
568
569 if (nargs>=4)
570 {
571 pedr = arg.GetArgumentInt(0);
572 calr1 = arg.GetArgumentInt(1);
573 calr2 = arg.GetArgumentInt(2);
574 datr1 = arg.GetArgumentInt(3);
575 datr2 = arg.GetArgumentInt(4);
576 return calibration(extractorflag,pedr,calr1,calr2,datr1,0);
577 }
578
579 if (nargs>=3)
580 {
581 pedr = arg.GetArgumentInt(0);
582 calr1 = arg.GetArgumentInt(1);
583 calr2 = arg.GetArgumentInt(2);
584 return calibration(extractorflag,pedr,calr1,calr2,0);
585 }
586
587 if (nargs>=2)
588 {
589 pedr = arg.GetArgumentInt(0);
590 calr1 = arg.GetArgumentInt(1);
591 gLog << "PEDR: " << pedr << " CALR1: " << calr1 << " CALR2 " << calr2 << endl;
592 gLog << "inpath: " << inpath << endl;
593 gLog << "extractor: " << extractorflag << endl;
594 return calibration(extractorflag,pedr,calr1,0,0);
595 }
596
597 if (nargs>=1)
598 {
599 pedr = arg.GetArgumentInt(0);
600 return calibration(extractorflag,pedr,0);
601 }
602
603 return calibration(extractorflag,pedr,calr1,calr2);
604}
605
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