| 1 | /* ======================================================================== *\
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| 2 | !
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| 3 | ! *
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| 4 | ! * This file is part of MARS, the MAGIC Analysis and Reconstruction
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| 5 | ! * Software. It is distributed to you in the hope that it can be a useful
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| 6 | ! * and timesaving tool in analysing Data of imaging Cerenkov telescopes.
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| 7 | ! * It is distributed WITHOUT ANY WARRANTY.
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| 8 | ! *
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| 9 | ! * Permission to use, copy, modify and distribute this software and its
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| 10 | ! * documentation for any purpose is hereby granted without fee,
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| 11 | ! * provided that the above copyright notice appear in all copies and
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| 12 | ! * that both that copyright notice and this permission notice appear
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| 13 | ! * in supporting documentation. It is provided "as is" without express
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| 14 | ! * or implied warranty.
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| 15 | ! *
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| 16 | !
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| 17 | !
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| 18 | ! Author(s): Oscar Blanch 12/2001 <mailto:blanch@ifae.es>
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| 19 | ! Author(s): Thomas Bretz 08/2002 <mailto:tbretz@astro.uni-wuerzburg.de>
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| 20 | !
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| 21 | ! Copyright: MAGIC Software Development, 2000-2004
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| 22 | !
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| 23 | !
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| 24 | \* ======================================================================== */
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| 25 |
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| 26 | /////////////////////////////////////////////////////////////////////////////
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| 27 | //
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| 28 | // MBadPixelsTreat
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| 29 | //
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| 30 | // You can use MBadPixelsTreat::SetUseInterpolation to replaced the
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| 31 | // bad pixels by the average of its neighbors instead of unmapping
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| 32 | // them. If you want to include the central pixel use
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| 33 | // MBadPixelsTreat::SetUseCentralPixel. The bad pixels are taken from
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| 34 | // an existing MBadPixelsCam.
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| 35 | //
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| 36 | // It check if there are enough neighbors to calculate the mean
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| 37 | // If not, unmap the pixel. The minimum number of good neighbors
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| 38 | // should be set using SetNumMinNeighbors
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| 39 | //
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| 40 | // If you want to interpolate unreliable pixels and unsuitable
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| 41 | // (broken) pixels use SetHardTreatment().
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| 42 | //
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| 43 | //
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| 44 | // Options:
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| 45 | // --------
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| 46 | // SetHardTreatment: Also interpolate unreliable pixels not only unsuitable
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| 47 | // SetUseInterpolation: Interpolate pixels instead of unmapping them
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| 48 | // SetUseCentralPixel: also use the pixel itself for interpolation
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| 49 | // SetProcessPedestalRun: process the pedestals once per run/file
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| 50 | // SetProcessPedestalEvt: process the pedestal once per event
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| 51 | // SetProcessTimes: also do some rough interpolation of the arrival time
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| 52 | //
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| 53 | //
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| 54 | // Input Containers:
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| 55 | // MCerPhotEvt
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| 56 | // MPedPhotCam
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| 57 | // MBadPixelsCam
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| 58 | // [MGeomCam]
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| 59 | //
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| 60 | // Output Containers:
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| 61 | // MCerPhotEvt
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| 62 | //
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| 63 | /////////////////////////////////////////////////////////////////////////////
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| 64 | #include "MBadPixelsTreat.h"
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| 65 |
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| 66 | #include <fstream>
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| 67 |
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| 68 | #include <TEnv.h>
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| 69 |
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| 70 | #include "MArrayD.h" // Used instead of TArrayD because operator[] has no range check
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| 71 |
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| 72 | #include "MLog.h"
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| 73 | #include "MLogManip.h"
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| 74 |
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| 75 | #include "MParList.h"
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| 76 |
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| 77 | #include "MGeomPix.h"
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| 78 | #include "MGeomCam.h"
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| 79 |
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| 80 | #include "MCerPhotPix.h"
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| 81 | #include "MCerPhotEvt.h"
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| 82 |
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| 83 | #include "MPedPhotPix.h"
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| 84 | #include "MPedPhotCam.h"
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| 85 |
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| 86 | #include "MBadPixelsPix.h"
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| 87 | #include "MBadPixelsCam.h"
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| 88 |
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| 89 | #include "MArrivalTime.h"
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| 90 |
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| 91 | ClassImp(MBadPixelsTreat);
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| 92 |
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| 93 | using namespace std;
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| 94 |
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| 95 | static const TString gsDefName = "MBadPixelsTreat";
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| 96 | static const TString gsDefTitle = "Task to treat bad pixels (interpolation, unmapping)";
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| 97 |
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| 98 | // --------------------------------------------------------------------------
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| 99 | //
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| 100 | // Default constructor.
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| 101 | //
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| 102 | MBadPixelsTreat::MBadPixelsTreat(const char *name, const char *title)
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| 103 | : fFlags(0), fNumMinNeighbors(3), fNamePedPhotCam("MPedPhotCam")
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| 104 | {
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| 105 | fName = name ? name : gsDefName.Data();
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| 106 | fTitle = title ? title : gsDefTitle.Data();
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| 107 |
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| 108 | SetUseInterpolation();
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| 109 | SetProcessPedestal();
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| 110 | SetProcessTimes();
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| 111 | }
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| 112 |
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| 113 | // --------------------------------------------------------------------------
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| 114 | //
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| 115 | // Returns the status of a pixel. If kHardTreatment is set a pixel must
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| 116 | // be unsuitable or uriliable to be treated. If not it is treated only if
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| 117 | // it is unsuitable
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| 118 | // (IsBad() checks for any flag)
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| 119 | //
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| 120 | Bool_t MBadPixelsTreat::IsPixelBad(Int_t idx) const
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| 121 | {
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| 122 | return TESTBIT(fFlags, kHardTreatment) ? (*fBadPixels)[idx].IsBad():(*fBadPixels)[idx].IsUnsuitable() ;
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| 123 | }
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| 124 |
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| 125 | // --------------------------------------------------------------------------
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| 126 | //
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| 127 | // - Try to find or create MBlindPixels in parameter list.
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| 128 | // - get the MCerPhotEvt from the parlist (abort if missing)
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| 129 | // - if no pixels are given by the user try to determin the starfield
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| 130 | // from the monte carlo run header.
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| 131 | //
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| 132 | Int_t MBadPixelsTreat::PreProcess (MParList *pList)
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| 133 | {
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| 134 | fBadPixels = (MBadPixelsCam*)pList->FindObject(AddSerialNumber("MBadPixelsCam"));
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| 135 | if (!fBadPixels)
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| 136 | {
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| 137 | *fLog << err << AddSerialNumber("MBadPixelsCam") << " not found... aborting." << endl;
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| 138 | return kFALSE;
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| 139 | }
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| 140 |
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| 141 | fEvt = (MCerPhotEvt*)pList->FindObject(AddSerialNumber("MCerPhotEvt"));
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| 142 | if (!fEvt)
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| 143 | {
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| 144 | *fLog << err << AddSerialNumber("MCerPhotEvt") << " not found... aborting." << endl;
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| 145 | return kFALSE;
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| 146 | }
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| 147 |
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| 148 | fGeomCam = 0;
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| 149 | if (!IsUseInterpolation())
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| 150 | return kTRUE;
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| 151 |
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| 152 | fGeomCam = (MGeomCam*)pList->FindObject(AddSerialNumber("MGeomCam"));
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| 153 | if (!fGeomCam)
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| 154 | {
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| 155 | *fLog << err << AddSerialNumber("MGeomCam") << " not found - can't use interpolation... abort." << endl;
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| 156 | *fLog << " Use MBadPixelsTreat::SetUseInterpolation(kFALSE) to switch interpolation" << endl;
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| 157 | *fLog << " off and use unmapping instead." << endl;
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| 158 | return kFALSE;
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| 159 | }
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| 160 |
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| 161 | fPedPhot = 0;
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| 162 | if (IsProcessPedestalEvt() || IsProcessPedestalRun())
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| 163 | {
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| 164 | fPedPhot = (MPedPhotCam*)pList->FindObject(AddSerialNumber(fNamePedPhotCam), "MPedPhotCam");
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| 165 | if (!fPedPhot)
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| 166 | {
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| 167 | *fLog << err << AddSerialNumber("MPedPhotCam") << " not found... aborting." << endl;
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| 168 | *fLog << " Use MBadPixelsTreat::SetProcessPedestalRun(kFALSE) and" << endl;
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| 169 | *fLog << " MBadPixelsTreat::SetProcessPedestalEvt(kFALSE) to switch" << endl;
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| 170 | *fLog << " Pedestal treatment off." << endl;
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| 171 | return kFALSE;
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| 172 | }
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| 173 | }
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| 174 |
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| 175 | fTimes = 0;
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| 176 | if (IsProcessTimes())
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| 177 | {
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| 178 | fTimes = (MArrivalTime*)pList->FindObject(AddSerialNumber("MArrivalTime"));
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| 179 | if (!fTimes)
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| 180 | {
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| 181 | *fLog << err << AddSerialNumber("MArrivalTime") << " not found... aborting." << endl;
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| 182 | *fLog << " Use MBadPixelsTreat::SetProcessTimes(kFALSE) to switch time interpolation off." << endl;
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| 183 | return kFALSE;
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| 184 | }
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| 185 | }
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| 186 |
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| 187 | if (IsProcessPedestalEvt())
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| 188 | *fLog << inf << "Processing Pedestals once per event..." << endl;
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| 189 | if (IsProcessPedestalRun())
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| 190 | *fLog << inf << "Processing Pedestals once per run..." << endl;
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| 191 | if (IsProcessTimes())
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| 192 | *fLog << inf << "Processing Arrival Times once per event..." << endl;
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| 193 |
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| 194 | return kTRUE;
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| 195 | }
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| 196 |
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| 197 | // --------------------------------------------------------------------------
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| 198 | //
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| 199 | // Replaces each pixel (signal, signal error, pedestal, pedestal rms)
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| 200 | // by the average of its surrounding pixels.
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| 201 | // If TESTBIT(fFlags, kUseCentralPixel) is set the central pixel is also
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| 202 | // included.
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| 203 | //
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| 204 | void MBadPixelsTreat::InterpolateSignal() const
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| 205 | {
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| 206 | const UShort_t entries = fGeomCam->GetNumPixels();
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| 207 |
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| 208 | //
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| 209 | // Create arrays (FIXME: Check if its possible to create it only once)
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| 210 | //
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| 211 | MArrayD nphot(entries);
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| 212 | MArrayD perr(entries);
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| 213 |
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| 214 | //
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| 215 | // Loop over all pixels
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| 216 | //
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| 217 | for (UShort_t i=0; i<entries; i++)
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| 218 | {
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| 219 | MCerPhotPix *pix = fEvt->GetPixById(i);
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| 220 |
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| 221 | //
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| 222 | // Check whether pixel with idx i is blind
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| 223 | //
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| 224 | if (pix && !IsPixelBad(i))
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| 225 | continue;
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| 226 |
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| 227 | //
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| 228 | // Get a pointer to this pixel. If it is not yet existing
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| 229 | // create a new entry for this pixel in MCerPhotEvt
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| 230 | //
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| 231 | if (!pix)
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| 232 | {
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| 233 | pix = fEvt->AddPixel(i, 0, 0);
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| 234 | (*fBadPixels)[i].SetUnsuitable(MBadPixelsPix::kUnsuitableEvt);
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| 235 | }
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| 236 |
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| 237 | //
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| 238 | // Get the corresponding geometry and pedestal
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| 239 | //
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| 240 | const MGeomPix &gpix = (*fGeomCam)[i];
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| 241 |
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| 242 | // Do Not-Use-Central-Pixel
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| 243 | const Bool_t nucp = !TESTBIT(fFlags, kUseCentralPixel);
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| 244 |
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| 245 | Int_t num = nucp ? 0 : 1;
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| 246 |
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| 247 | nphot[i] = nucp ? 0 : pix->GetNumPhotons();
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| 248 | perr[i] = nucp ? 0 : Pow2(pix->GetErrorPhot());
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| 249 |
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| 250 | //
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| 251 | // The values are rescaled to the small pixels area for the right comparison
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| 252 | //
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| 253 | const Double_t ratio = fGeomCam->GetPixRatio(i);
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| 254 |
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| 255 | nphot[i] *= ratio;
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| 256 | perr[i] *= ratio;
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| 257 |
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| 258 | //
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| 259 | // Loop over all its neighbors
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| 260 | //
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| 261 | const Int_t n = gpix.GetNumNeighbors();
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| 262 | for (int j=0; j<n; j++)
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| 263 | {
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| 264 | const UShort_t nidx = gpix.GetNeighbor(j);
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| 265 |
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| 266 | //
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| 267 | // Do not use blind neighbors
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| 268 | //
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| 269 | if (IsPixelBad(nidx))
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| 270 | continue;
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| 271 |
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| 272 | //
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| 273 | // Check whether the neighbor has a signal stored
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| 274 | //
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| 275 | const MCerPhotPix *evtpix = fEvt->GetPixById(nidx);
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| 276 | if (!evtpix)
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| 277 | continue;
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| 278 |
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| 279 | //
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| 280 | // Get the geometry for the neighbor
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| 281 | //
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| 282 | const Double_t nratio = fGeomCam->GetPixRatio(nidx);
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| 283 |
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| 284 | //
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| 285 | //The error is calculated as the quadratic sum of the errors
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| 286 | //
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| 287 | nphot[i] += nratio*evtpix->GetNumPhotons();
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| 288 | perr[i] += nratio* Pow2(evtpix->GetErrorPhot());
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| 289 |
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| 290 | num++;
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| 291 | }
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| 292 |
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| 293 | // Check if there are enough neighbors to calculate the mean
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| 294 | // If not, unmap the pixel. The maximum number of blind neighbors
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| 295 | // should be 2
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| 296 | if (num<fNumMinNeighbors)
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| 297 | {
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| 298 | pix->SetPixelUnmapped();
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| 299 | continue;
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| 300 | }
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| 301 |
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| 302 | //
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| 303 | // Now the mean is calculated and the values rescaled back
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| 304 | // to the pixel area
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| 305 | //
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| 306 | nphot[i] /= (num*ratio);
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| 307 | perr[i] = TMath::Sqrt(perr[i]/(num*ratio));
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| 308 |
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| 309 | pix->Set(nphot[i], perr[i]);
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| 310 | }
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| 311 | }
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| 312 |
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| 313 | // --------------------------------------------------------------------------
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| 314 | //
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| 315 | void MBadPixelsTreat::InterpolatePedestals() const
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| 316 | {
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| 317 | const Int_t entries = fPedPhot->GetSize();
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| 318 |
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| 319 | // Create arrays (FIXME: Check if its possible to create it only once)
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| 320 | MArrayD ped(entries);
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| 321 | MArrayD rms(entries);
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| 322 |
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| 323 | //
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| 324 | // Loop over all pixels
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| 325 | //
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| 326 | for (UShort_t i=0; i<entries; i++)
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| 327 | {
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| 328 | //
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| 329 | // Check whether pixel with idx i is blind
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| 330 | //
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| 331 | if (!IsPixelBad(i))
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| 332 | continue;
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| 333 |
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| 334 | //
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| 335 | // Get the corresponding geometry and pedestal
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| 336 | //
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| 337 | const MGeomPix &gpix = (*fGeomCam)[i];
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| 338 | const MPedPhotPix &ppix = (*fPedPhot)[i];
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| 339 |
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| 340 | // Do Not-Use-Central-Pixel
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| 341 | const Bool_t nucp = !TESTBIT(fFlags, kUseCentralPixel);
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| 342 |
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| 343 | Int_t num = nucp ? 0 : 1;
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| 344 |
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| 345 | ped[i] = nucp ? 0 : ppix.GetMean();
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| 346 | rms[i] = nucp ? 0 : Pow2(ppix.GetRms());
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| 347 |
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| 348 | //
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| 349 | // The values are rescaled to the small pixels area for the right comparison
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| 350 | //
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| 351 | const Double_t ratio = fGeomCam->GetPixRatio(i);
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| 352 |
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| 353 | ped[i] *= ratio;
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| 354 | rms[i] *= ratio;
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| 355 |
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| 356 | //
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| 357 | // Loop over all its neighbors
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| 358 | //
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| 359 | const Int_t n = gpix.GetNumNeighbors();
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| 360 | for (int j=0; j<n; j++)
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| 361 | {
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| 362 | const UShort_t nidx = gpix.GetNeighbor(j);
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| 363 |
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| 364 | //
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| 365 | // Do not use blind neighbors
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| 366 | //
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| 367 | if (IsPixelBad(nidx))
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| 368 | continue;
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| 369 |
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| 370 | //
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| 371 | // Get the geometry for the neighbor
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| 372 | //
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| 373 | const Double_t nratio = fGeomCam->GetPixRatio(nidx);
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| 374 | const MPedPhotPix &nppix = (*fPedPhot)[nidx];
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| 375 |
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| 376 | //
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| 377 | //The error is calculated as the quadratic sum of the errors
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| 378 | //
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| 379 | ped[i] += nratio*nppix.GetMean();
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| 380 | rms[i] += nratio*Pow2(nppix.GetRms());
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| 381 |
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| 382 | num++;
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| 383 | }
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| 384 |
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| 385 | // Check if there are enough neighbors to calculate the mean
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| 386 | // If not, unmap the pixel. The minimum number of good neighbors
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| 387 | // should be fNumMinNeighbors
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| 388 | if (num < fNumMinNeighbors)
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| 389 | {
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| 390 | MCerPhotPix *pix =fEvt->GetPixById(i);
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| 391 | if (!pix)
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| 392 | pix = fEvt->AddPixel(i, 0, 0);
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| 393 | pix->SetPixelUnmapped();
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| 394 | continue;
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| 395 | }
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| 396 |
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| 397 | //
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| 398 | // Now the mean is calculated and the values rescaled back
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| 399 | // to the pixel area
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| 400 | //
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| 401 | ped[i] /= (num*ratio);
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| 402 | rms[i] = TMath::Sqrt(rms[i]/(num*ratio));
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| 403 |
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| 404 | (*fPedPhot)[i].Set(ped[i], rms[i]);
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| 405 | }
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| 406 | }
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| 407 |
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| 408 | // --------------------------------------------------------------------------
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| 409 | //
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| 410 | void MBadPixelsTreat::InterpolateTimes() const
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| 411 | {
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| 412 | Int_t n = fTimes->GetSize();
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| 413 |
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| 414 | for (int i=0; i<n; i++)
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| 415 | {
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| 416 | //
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| 417 | // Check whether pixel with idx i is blind
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| 418 | //
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| 419 | if (!IsPixelBad(i))
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| 420 | continue;
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| 421 |
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| 422 | //
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| 423 | // Get the corresponding geometry and pedestal
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| 424 | //
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| 425 | const MGeomPix &gpix = (*fGeomCam)[i];
|
|---|
| 426 |
|
|---|
| 427 | const Int_t n0 = gpix.GetNumNeighbors();
|
|---|
| 428 |
|
|---|
| 429 | MArrayD time(6);
|
|---|
| 430 | for (int j=0; j<n0; j++)
|
|---|
| 431 | time[j] = (*fTimes)[gpix.GetNeighbor(j)];
|
|---|
| 432 |
|
|---|
| 433 | Int_t p0=0;
|
|---|
| 434 | Int_t p1=0;
|
|---|
| 435 |
|
|---|
| 436 | Double_t min=FLT_MAX;
|
|---|
| 437 | for (int j=0; j<n0; j++)
|
|---|
| 438 | for (int k=1; k<j+1; k++)
|
|---|
| 439 | {
|
|---|
| 440 | const Double_t diff = TMath::Abs(time[n0-k] - time[n0-k-j]);
|
|---|
| 441 |
|
|---|
| 442 | if (diff>=min && diff<250)
|
|---|
| 443 | continue;
|
|---|
| 444 |
|
|---|
| 445 | p0 = n0-k;
|
|---|
| 446 | p1 = n0-k-j;
|
|---|
| 447 | min = diff;
|
|---|
| 448 | }
|
|---|
| 449 |
|
|---|
| 450 | if (TMath::Abs(time[p0] - time[p1])<250)
|
|---|
| 451 | fTimes->SetTime(i, (time[p0]+time[p1])/2);
|
|---|
| 452 | }
|
|---|
| 453 | }
|
|---|
| 454 |
|
|---|
| 455 | // --------------------------------------------------------------------------
|
|---|
| 456 | //
|
|---|
| 457 | // Replaces each pixel (signal, signal error, pedestal, pedestal rms)
|
|---|
| 458 | // by the average of its surrounding pixels.
|
|---|
| 459 | // If TESTBIT(fFlags, kUseCentralPixel) is set the central pixel is also
|
|---|
| 460 | // included.
|
|---|
| 461 | //
|
|---|
| 462 | // NT: Informations about the interpolated pedestals are added.
|
|---|
| 463 | // When the option Interpolated is called, the blind pixel with the new
|
|---|
| 464 | // values of signal and fluttuation is included in the calculation of
|
|---|
| 465 | // the Image Parameters.
|
|---|
| 466 | //
|
|---|
| 467 | /*
|
|---|
| 468 | void MBadPixelsTreat::Interpolate() const
|
|---|
| 469 | {
|
|---|
| 470 | const UShort_t entries = fGeomCam->GetNumPixels();
|
|---|
| 471 |
|
|---|
| 472 | //
|
|---|
| 473 | // Create arrays
|
|---|
| 474 | //
|
|---|
| 475 | TArrayD nphot(entries);
|
|---|
| 476 | TArrayD perr(entries);
|
|---|
| 477 | TArrayD ped(entries);
|
|---|
| 478 | TArrayD pedrms(entries);
|
|---|
| 479 |
|
|---|
| 480 | //
|
|---|
| 481 | // Loop over all pixels
|
|---|
| 482 | //
|
|---|
| 483 | for (UShort_t i=0; i<entries; i++)
|
|---|
| 484 | {
|
|---|
| 485 | MCerPhotPix *pix = fEvt->GetPixById(i);
|
|---|
| 486 |
|
|---|
| 487 | //
|
|---|
| 488 | // Check whether pixel with idx i is blind
|
|---|
| 489 | //
|
|---|
| 490 | if (pix && (*fBadPixels)[i].IsOK())
|
|---|
| 491 | continue;
|
|---|
| 492 |
|
|---|
| 493 | //
|
|---|
| 494 | // Get a pointer to this pixel. If it is not yet existing
|
|---|
| 495 | // create a new entry for this pixel in MCerPhotEvt
|
|---|
| 496 | //
|
|---|
| 497 | if (!pix)
|
|---|
| 498 | {
|
|---|
| 499 | pix = fEvt->AddPixel(i, 0, 0);
|
|---|
| 500 | (*fBadPixels)[i].SetUnsuitable(MBadPixelsPix::kUnsuitableEvt);
|
|---|
| 501 | }
|
|---|
| 502 |
|
|---|
| 503 | //
|
|---|
| 504 | // Get the corresponding geometry and pedestal
|
|---|
| 505 | //
|
|---|
| 506 | const MGeomPix &gpix = (*fGeomCam)[i];
|
|---|
| 507 | const MPedPhotPix &ppix = (*fPedPhot)[i];
|
|---|
| 508 |
|
|---|
| 509 | // Do Not-Use-Central-Pixel
|
|---|
| 510 | const Bool_t nucp = !TESTBIT(fFlags, kUseCentralPixel);
|
|---|
| 511 |
|
|---|
| 512 | Int_t num = nucp ? 0 : 1;
|
|---|
| 513 |
|
|---|
| 514 | nphot[i] = nucp ? 0 : pix->GetNumPhotons();
|
|---|
| 515 | ped[i] = nucp ? 0 : ppix.GetMean();
|
|---|
| 516 | perr[i] = nucp ? 0 : Pow2(pix->GetErrorPhot());
|
|---|
| 517 | pedrms[i] = nucp ? 0 : Pow2(ppix.GetRms());
|
|---|
| 518 |
|
|---|
| 519 | //
|
|---|
| 520 | // The values are rescaled to the small pixels area for the right comparison
|
|---|
| 521 | //
|
|---|
| 522 | const Double_t ratio = fGeomCam->GetPixRatio(i);
|
|---|
| 523 |
|
|---|
| 524 | if (nucp)
|
|---|
| 525 | {
|
|---|
| 526 | nphot[i] *= ratio;
|
|---|
| 527 | perr[i] *= ratio;
|
|---|
| 528 | ped[i] *= ratio;
|
|---|
| 529 | pedrms[i] *= ratio;
|
|---|
| 530 | }
|
|---|
| 531 |
|
|---|
| 532 | //
|
|---|
| 533 | // Loop over all its neighbors
|
|---|
| 534 | //
|
|---|
| 535 | const Int_t n = gpix.GetNumNeighbors();
|
|---|
| 536 | for (int j=0; j<n; j++)
|
|---|
| 537 | {
|
|---|
| 538 | const UShort_t nidx = gpix.GetNeighbor(j);
|
|---|
| 539 |
|
|---|
| 540 | //
|
|---|
| 541 | // Do not use blind neighbors
|
|---|
| 542 | //
|
|---|
| 543 | if ((*fBadPixels)[nidx].IsBad())
|
|---|
| 544 | continue;
|
|---|
| 545 |
|
|---|
| 546 | //
|
|---|
| 547 | // Check whether the neighbor has a signal stored
|
|---|
| 548 | //
|
|---|
| 549 | const MCerPhotPix *evtpix = fEvt->GetPixById(nidx);
|
|---|
| 550 | if (!evtpix)
|
|---|
| 551 | continue;
|
|---|
| 552 |
|
|---|
| 553 | //
|
|---|
| 554 | // Get the geometry for the neighbor
|
|---|
| 555 | //
|
|---|
| 556 | const Double_t nratio = fGeomCam->GetPixRatio(nidx);
|
|---|
| 557 | MPedPhotPix &nppix = (*fPedPhot)[nidx];
|
|---|
| 558 |
|
|---|
| 559 | //
|
|---|
| 560 | // The error is calculated as the quadratic sum of the errors
|
|---|
| 561 | //
|
|---|
| 562 | nphot[i] += nratio*evtpix->GetNumPhotons();
|
|---|
| 563 | ped[i] += nratio*nppix.GetMean();
|
|---|
| 564 | perr[i] += nratio*Pow2(evtpix->GetErrorPhot());
|
|---|
| 565 | pedrms[i] += nratio*Pow2(nppix.GetRms());
|
|---|
| 566 |
|
|---|
| 567 | num++;
|
|---|
| 568 | }
|
|---|
| 569 |
|
|---|
| 570 | if (num<fNumMinNeighbors)
|
|---|
| 571 | {
|
|---|
| 572 | pix->SetPixelUnmapped();
|
|---|
| 573 | nphot[i] = 0;
|
|---|
| 574 | ped[i] = 0;
|
|---|
| 575 | perr[i] = 0;
|
|---|
| 576 | pedrms[i] = 0;
|
|---|
| 577 | continue;
|
|---|
| 578 | }
|
|---|
| 579 |
|
|---|
| 580 | //
|
|---|
| 581 | // Now the mean is calculated and the values rescaled back to the pixel area
|
|---|
| 582 | //
|
|---|
| 583 | nphot[i] /= num*ratio;
|
|---|
| 584 | ped[i] /= num*ratio;
|
|---|
| 585 | perr[i] = TMath::Sqrt(perr[i]/(num*ratio));
|
|---|
| 586 | pedrms[i] = TMath::Sqrt(pedrms[i]/(num*ratio));
|
|---|
| 587 |
|
|---|
| 588 | }
|
|---|
| 589 |
|
|---|
| 590 | //
|
|---|
| 591 | // Now the new pixel values are calculated and can be replaced in
|
|---|
| 592 | // the corresponding containers
|
|---|
| 593 | //
|
|---|
| 594 | for (UShort_t i=0; i<entries; i++)
|
|---|
| 595 | {
|
|---|
| 596 | //
|
|---|
| 597 | // Do not use blind neighbors
|
|---|
| 598 | //
|
|---|
| 599 | if ((*fBadPixels)[i].IsOK())
|
|---|
| 600 | continue;
|
|---|
| 601 |
|
|---|
| 602 | //
|
|---|
| 603 | // It must exist, we have created it in the loop before.
|
|---|
| 604 | //
|
|---|
| 605 | fEvt->GetPixById(i)->Set(nphot[i], perr[i]);
|
|---|
| 606 | (*fPedPhot)[i].Set(ped[i], pedrms[i]);
|
|---|
| 607 | }
|
|---|
| 608 | }
|
|---|
| 609 | */
|
|---|
| 610 |
|
|---|
| 611 | // --------------------------------------------------------------------------
|
|---|
| 612 | //
|
|---|
| 613 | // Removes all blind pixels from the analysis by setting their state
|
|---|
| 614 | // to unused.
|
|---|
| 615 | //
|
|---|
| 616 | void MBadPixelsTreat::Unmap() const
|
|---|
| 617 | {
|
|---|
| 618 | const UShort_t entries = fEvt->GetNumPixels();
|
|---|
| 619 |
|
|---|
| 620 | //
|
|---|
| 621 | // remove the pixels in fPixelsIdx if they are set to be used,
|
|---|
| 622 | // (set them to 'unused' state)
|
|---|
| 623 | //
|
|---|
| 624 | for (UShort_t i=0; i<entries; i++)
|
|---|
| 625 | {
|
|---|
| 626 | MCerPhotPix &pix = (*fEvt)[i];
|
|---|
| 627 |
|
|---|
| 628 | if (IsPixelBad(pix.GetPixId()))
|
|---|
| 629 | pix.SetPixelUnmapped();
|
|---|
| 630 | }
|
|---|
| 631 | }
|
|---|
| 632 |
|
|---|
| 633 | // --------------------------------------------------------------------------
|
|---|
| 634 | //
|
|---|
| 635 | // Interpolate Pedestals if kProcessPedestal not set
|
|---|
| 636 | //
|
|---|
| 637 | Bool_t MBadPixelsTreat::ReInit(MParList *pList)
|
|---|
| 638 | {
|
|---|
| 639 | if (IsUseInterpolation() && IsProcessPedestalRun())
|
|---|
| 640 | InterpolatePedestals();
|
|---|
| 641 | return kTRUE;
|
|---|
| 642 | }
|
|---|
| 643 |
|
|---|
| 644 | // --------------------------------------------------------------------------
|
|---|
| 645 | //
|
|---|
| 646 | // Treat the blind pixels
|
|---|
| 647 | //
|
|---|
| 648 | Int_t MBadPixelsTreat::Process()
|
|---|
| 649 | {
|
|---|
| 650 | if (IsUseInterpolation())
|
|---|
| 651 | {
|
|---|
| 652 | InterpolateSignal();
|
|---|
| 653 | if (IsProcessPedestalEvt())
|
|---|
| 654 | InterpolatePedestals();
|
|---|
| 655 | if (IsProcessTimes())
|
|---|
| 656 | InterpolateTimes();
|
|---|
| 657 | }
|
|---|
| 658 | else
|
|---|
| 659 | Unmap();
|
|---|
| 660 |
|
|---|
| 661 | return kTRUE;
|
|---|
| 662 | }
|
|---|
| 663 |
|
|---|
| 664 | void MBadPixelsTreat::StreamPrimitive(ofstream &out) const
|
|---|
| 665 | {
|
|---|
| 666 | out << " MBadPixelsTreat " << GetUniqueName();
|
|---|
| 667 | if (fName!=gsDefName || fTitle!=gsDefTitle)
|
|---|
| 668 | {
|
|---|
| 669 | out << "(\"" << fName << "\"";
|
|---|
| 670 | if (fTitle!=gsDefTitle)
|
|---|
| 671 | out << ", \"" << fTitle << "\"";
|
|---|
| 672 | out <<")";
|
|---|
| 673 | }
|
|---|
| 674 | out << ";" << endl;
|
|---|
| 675 |
|
|---|
| 676 | if (IsUseInterpolation())
|
|---|
| 677 | out << " " << GetUniqueName() << ".SetUseInterpolation();" << endl;
|
|---|
| 678 | if (IsUseCentralPixel())
|
|---|
| 679 | out << " " << GetUniqueName() << ".SetUseCentralPixel();" << endl;
|
|---|
| 680 | if (IsProcessPedestalRun())
|
|---|
| 681 | out << " " << GetUniqueName() << ".SetProcessPedestalRun();" << endl;
|
|---|
| 682 | if (IsProcessPedestalEvt())
|
|---|
| 683 | out << " " << GetUniqueName() << ".SetProcessPedestalEvt();" << endl;
|
|---|
| 684 | if (IsProcessTimes())
|
|---|
| 685 | out << " " << GetUniqueName() << ".SetProcessTimes();" << endl;
|
|---|
| 686 | if (IsHardTreatment())
|
|---|
| 687 | out << " " << GetUniqueName() << ".SetHardTreatment();" << endl;
|
|---|
| 688 | if (fNumMinNeighbors!=3)
|
|---|
| 689 | out << " " << GetUniqueName() << ".SetNumMinNeighbors(" << (int)fNumMinNeighbors << ");" << endl;
|
|---|
| 690 | }
|
|---|
| 691 |
|
|---|
| 692 | // --------------------------------------------------------------------------
|
|---|
| 693 | //
|
|---|
| 694 | // Read the setup from a TEnv, eg:
|
|---|
| 695 | // MBadPixelsTreat.UseInterpolation: no
|
|---|
| 696 | // MBadPixelsTreat.UseCentralPixel: no
|
|---|
| 697 | // MBadPixelsTreat.HardTreatment: no
|
|---|
| 698 | // MBadPixelsTreat.ProcessPedestalRun: no
|
|---|
| 699 | // MBadPixelsTreat.ProcessPedestalEvt: no
|
|---|
| 700 | // MBadPixelsTreat.NumMinNeighbors: 3
|
|---|
| 701 | //
|
|---|
| 702 | Int_t MBadPixelsTreat::ReadEnv(const TEnv &env, TString prefix, Bool_t print)
|
|---|
| 703 | {
|
|---|
| 704 | Bool_t rc = kFALSE;
|
|---|
| 705 | if (IsEnvDefined(env, prefix, "UseInterpolation", print))
|
|---|
| 706 | {
|
|---|
| 707 | rc = kTRUE;
|
|---|
| 708 | SetUseInterpolation(GetEnvValue(env, prefix, "UseInterpolation", IsUseInterpolation()));
|
|---|
| 709 | }
|
|---|
| 710 | if (IsEnvDefined(env, prefix, "UseCentralPixel", print))
|
|---|
| 711 | {
|
|---|
| 712 | rc = kTRUE;
|
|---|
| 713 | SetUseCentralPixel(GetEnvValue(env, prefix, "UseCentralPixel", IsUseCentralPixel()));
|
|---|
| 714 | }
|
|---|
| 715 | if (IsEnvDefined(env, prefix, "HardTreatment", print))
|
|---|
| 716 | {
|
|---|
| 717 | rc = kTRUE;
|
|---|
| 718 | SetHardTreatment(GetEnvValue(env, prefix, "HardTreatment", IsHardTreatment()));
|
|---|
| 719 | }
|
|---|
| 720 | if (IsEnvDefined(env, prefix, "ProcessPedestalRun", print))
|
|---|
| 721 | {
|
|---|
| 722 | rc = kTRUE;
|
|---|
| 723 | SetProcessPedestalRun(GetEnvValue(env, prefix, "ProcessPedestalRun", IsProcessPedestalRun()));
|
|---|
| 724 | }
|
|---|
| 725 | if (IsEnvDefined(env, prefix, "ProcessPedestalEvt", print))
|
|---|
| 726 | {
|
|---|
| 727 | rc = kTRUE;
|
|---|
| 728 | SetProcessPedestalEvt(GetEnvValue(env, prefix, "ProcessPedestalEvt", IsProcessPedestalEvt()));
|
|---|
| 729 | }
|
|---|
| 730 | if (IsEnvDefined(env, prefix, "ProcessTimes", print))
|
|---|
| 731 | {
|
|---|
| 732 | rc = kTRUE;
|
|---|
| 733 | SetProcessTimes(GetEnvValue(env, prefix, "ProcessTimes", IsProcessTimes()));
|
|---|
| 734 | }
|
|---|
| 735 | if (IsEnvDefined(env, prefix, "NumMinNeighbors", print))
|
|---|
| 736 | {
|
|---|
| 737 | rc = kTRUE;
|
|---|
| 738 | SetNumMinNeighbors(GetEnvValue(env, prefix, "NumMinNeighbors", fNumMinNeighbors));
|
|---|
| 739 | }
|
|---|
| 740 | return rc;
|
|---|
| 741 | }
|
|---|