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1	/* ======================================================================== *\
2	!
3	! *
4	! * This file is part of MARS, the MAGIC Analysis and Reconstruction
5	! * Software. It is distributed to you in the hope that it can be a useful
6	! * and timesaving tool in analysing Data of imaging Cerenkov telescopes.
7	! * It is distributed WITHOUT ANY WARRANTY.
8	! *
9	! * Permission to use, copy, modify and distribute this software and its
10	! * documentation for any purpose is hereby granted without fee,
11	! * provided that the above copyright notice appear in all copies and
12	! * that both that copyright notice and this permission notice appear
13	! * in supporting documentation. It is provided "as is" without express
14	! * or implied warranty.
15
16	! *
17	!
18	!
19	! Author(s): Markus Gaug 11/2003 <mailto:markus@ifae.es>
20	!
21	! Copyright: MAGIC Software Development, 2000-2001
22	!
23	!
24	\* ======================================================================== */
25
26	/////////////////////////////////////////////////////////////////////////////
27	//
28	// MCalibrationCam
29	//
30	// Hold the whole Calibration results of the camera:
31	//
32	// 1) MCalibrationCam initializes a TClonesArray whose elements are
33	// pointers to MCalibrationPix Containers
34	// 2) It initializes a pointer to an MCalibrationBlindPix container
35	// 3) It initializes a pointer to an MCalibrationPINDiode container
36	//
37	//
38	// The calculated values (types of GetPixelContent) are:
39	//
40	// Fitted values:
41	// ==============
42	//
43	// 0: Fitted Charge
44	// 1: Error of fitted Charge
45	// 2: Sigma of fitted Charge
46	// 3: Error of Sigma of fitted Charge
47	//
48	// Useful variables derived from the fit results:
49	// =============================================
50	//
51	// 4: Returned probability of Gauss fit to Charge distribution
52	// 5: Reduced Sigma of fitted Charge --> sqrt(sigma_Q^2 - PedRMS^2)
53	// 6: Error Reduced Sigma of fitted Charge
54	// 7: Reduced Sigma per Charge
55	// 8: Error of Reduced Sigma per Charge
56	//
57	// Results of the different calibration methods:
58	// =============================================
59	//
60	// 9: Number of Photo-electrons obtained with the F-Factor method
61	// 10: Error on Number of Photo-electrons obtained with the F-Factor method
62	// 11: Mean conversion factor obtained with the F-Factor method
63	// 12: Error on the mean conversion factor obtained with the F-Factor method
64	// 13: Overall F-Factor of the readout obtained with the F-Factor method
65	// 14: Error on Overall F-Factor of the readout obtained with the F-Factor method
66	// 15: Number of Photons inside Plexiglass obtained with the Blind Pixel method
67	// 16: Error on Number of Photons inside Plexiglass obtained with the Blind Pixel method
68	// 17: Mean conversion factor obtained with the Blind Pixel method
69	// 18: Error on the mean conversion factor obtained with the Blind Pixel method
70	// 19: Overall F-Factor of the readout obtained with the Blind Pixel method
71	// 20: Error on Overall F-Factor of the readout obtained with the Blind Pixel method
72	// 21: Number of Photons outside Plexiglass obtained with the PIN Diode method
73	// 22: Error on Number of Photons outside Plexiglass obtained with the PIN Diode method
74	// 23: Mean conversion factor obtained with the PIN Diode method
75	// 24: Error on the mean conversion factor obtained with the PIN Diode method
76	// 25: Overall F-Factor of the readout obtained with the PIN Diode method
77	// 26: Error on Overall F-Factor of the readout obtained with the PIN Diode method
78	//
79	// Localized defects:
80	// ==================
81	//
82	// 27: Excluded Pixels
83	// 28: Pixels where the fit did not succeed --> results obtained only from the histograms
84	// 29: Pixels with succeeded fit, but apparently wrong results
85	// 30: Pixels with un-expected behavior in the fourier spectrum (e.g. oscillations)
86	//
87	// Other classifications of pixels:
88	// ================================
89	//
90	// 31: Pixels with saturated Hi-Gain
91	//
92	// Classification of validity of the calibrations:
93	// ===============================================
94	//
95	// 32: Pixels with valid calibration by the F-Factor-Method
96	// 33: Pixels with valid calibration by the Blind Pixel-Method
97	// 34: Pixels with valid calibration by the PIN Diode-Method
98	//
99	// Used Pedestals:
100	// ===============
101	//
102	// 35: Mean Pedestal over the entire range of signal extraction
103	// 36: Error on the Mean Pedestal over the entire range of signal extraction
104	// 37: Pedestal RMS over the entire range of signal extraction
105	// 38: Error on the Pedestal RMS over the entire range of signal extraction
106	//
107	// Calculated absolute arrival times (very low precision!):
108	// ========================================================
109	//
110	// 39: Absolute Arrival time of the signal
111	// 40: Error on the Absolute Arrival time of the signal
112	// 41: RMS of the Absolute Arrival time of the signal
113	// 42: Error on the RMS of the Absolute Arrival time of the signal
114	//
115	/////////////////////////////////////////////////////////////////////////////
116	#include "MCalibrationCam.h"
117
118	#include <TH2.h>
119	#include <TCanvas.h>
120	#include <TClonesArray.h>
121
122	#include "MLog.h"
123	#include "MLogManip.h"
124
125	#include "MGeomCam.h"
126	#include "MGeomPix.h"
127
128	#include "MCalibrationPix.h"
129	#include "MCalibrationConfig.h"
130	#include "MCalibrationBlindPix.h"
131	#include "MCalibrationPINDiode.h"
132
133	#include "MHCalibrationPixel.h"
134
135	ClassImp(MCalibrationCam);
136
137	using namespace std;
138
139	const Int_t MCalibrationCam::gkBlindPixelId = 559;
140	const Int_t MCalibrationCam::gkPINDiodeId = 9999;
141	const Float_t MCalibrationCam::gkBlindPixelArea = 100;
142	const Float_t MCalibrationCam::gkPINDiodeArea = 100;
143
144	// --------------------------------------------------------------------------
145	//
146	// Default constructor.
147	//
148	// Creates a TClonesArray of MCalibrationPix containers, initialized to 1 entry
149	// Later, a call to MCalibrationCam::InitSize(Int_t size) has to be performed
150	//
151	// Creates an MCalibrationBlindPix container
152	// Creates an MCalibrationPINDiode container
153	//
154	MCalibrationCam::MCalibrationCam(const char name, const char title)
155	: fOffsets(NULL),
156	fSlopes(NULL),
157	fOffvsSlope(NULL)
158	{
159	fName = name ? name : "MCalibrationCam";
160	fTitle = title ? title : "Storage container for the Calibration Information in the camera";
161
162	fPixels = new TClonesArray("MCalibrationPix",1);
163	fBlindPixel = new MCalibrationBlindPix();
164	fPINDiode = new MCalibrationPINDiode();
165
166	Clear();
167	}
168
169	// --------------------------------------------------------------------------
170	//
171	// Delete the TClonesArray of MCalibrationPix containers
172	// Delete the MCalibrationPINDiode and the MCalibrationBlindPix
173	//
174	// Delete the histograms if they exist
175	//
176	MCalibrationCam::~MCalibrationCam()
177	{
178
179	//
180	// delete fPixels should delete all Objects stored inside
181	//
182	delete fPixels;
183	delete fBlindPixel;
184	delete fPINDiode;
185
186	if (fOffsets)
187	delete fOffsets;
188	if (fSlopes)
189	delete fSlopes;
190	if (fOffvsSlope)
191	delete fOffvsSlope;
192
193	}
194
195	// -------------------------------------------------------------------
196	//
197	// This function simply allocates memory via the ROOT command:
198	// (TObject*) TStorage::ReAlloc(fCont, newSize sizeof(TObject*),
199	// fSize * sizeof(TObject*));
200	// newSize corresponds to size in our case
201	// fSize is the old size (in most cases: 1)
202	//
203	void MCalibrationCam::InitSize(const UInt_t i)
204	{
205
206	//
207	// check if we have already initialized to size
208	//
209	if (CheckBounds(i))
210	return;
211
212	fPixels->ExpandCreate(i);
213
214	}
215
216	// --------------------------------------------------------------------------
217	//
218	// This function returns the current size of the TClonesArray
219	// independently if the MCalibrationPix is filled with values or not.
220	//
221	// It is the size of the array fPixels.
222	//
223	Int_t MCalibrationCam::GetSize() const
224	{
225	return fPixels->GetEntriesFast();
226	}
227
228	// --------------------------------------------------------------------------
229	//
230	// Check if position i is inside the current bounds of the TClonesArray
231	//
232	Bool_t MCalibrationCam::CheckBounds(Int_t i) const
233	{
234	return i < GetSize();
235	}
236
237
238	// --------------------------------------------------------------------------
239	//
240	// Get i-th pixel (pixel number)
241	//
242	MCalibrationPix &MCalibrationCam::operator[](Int_t i)
243	{
244	return static_cast<MCalibrationPix>(fPixels->UncheckedAt(i));
245	}
246
247	// --------------------------------------------------------------------------
248	//
249	// Get i-th pixel (pixel number)
250	//
251	MCalibrationPix &MCalibrationCam::operator[](Int_t i) const
252	{
253	return static_cast<MCalibrationPix>(fPixels->UncheckedAt(i));
254	}
255
256
257	// --------------------------------------
258	//
259	void MCalibrationCam::Clear(Option_t *o)
260	{
261
262	fPixels->ForEach(TObject, Clear)();
263	fBlindPixel->Clear();
264	fPINDiode->Clear();
265
266	fMeanFluxInsidePlexiglass = -1.;
267	fMeanFluxErrInsidePlexiglass = -1.;
268	fMeanFluxOutsidePlexiglass = -1.;
269	fMeanFluxErrOutsidePlexiglass = -1.;
270
271	fNumExcludedPixels = 0;
272
273	CLRBIT(fFlags,kBlindPixelMethodValid);
274	CLRBIT(fFlags,kPINDiodeMethodValid);
275	CLRBIT(fFlags,kFluxInsidePlexiglassAvailable);
276	CLRBIT(fFlags,kFluxOutsidePlexiglassAvailable);
277
278	return;
279	}
280
281	void MCalibrationCam::SetBlindPixelMethodValid(const Bool_t b)
282	{
283
284	if (b)
285	SETBIT(fFlags, kBlindPixelMethodValid);
286	else
287	CLRBIT(fFlags, kBlindPixelMethodValid);
288
289	}
290
291	void MCalibrationCam::SetPINDiodeMethodValid(const Bool_t b)
292	{
293
294	if (b)
295	SETBIT(fFlags, kPINDiodeMethodValid);
296	else
297	CLRBIT(fFlags, kPINDiodeMethodValid);
298
299
300	}
301
302	Bool_t MCalibrationCam::IsBlindPixelMethodValid() const
303	{
304	return TESTBIT(fFlags,kBlindPixelMethodValid);
305	}
306
307	Bool_t MCalibrationCam::IsPINDiodeMethodValid() const
308	{
309	return TESTBIT(fFlags,kPINDiodeMethodValid);
310	}
311
312
313	Bool_t MCalibrationCam::IsFluxInsidePlexiglassAvailable() const
314	{
315	return TESTBIT(fFlags,kFluxInsidePlexiglassAvailable);
316	}
317
318	Bool_t MCalibrationCam::IsFluxOutsidePlexiglassAvailable() const
319	{
320	return TESTBIT(fFlags,kFluxOutsidePlexiglassAvailable);
321	}
322
323
324
325	// --------------------------------------------------------------------------
326	//
327	// Print first the well fitted pixels
328	// and then the ones which are not FitValid
329	//
330	void MCalibrationCam::Print(Option_t *o) const
331	{
332
333	*fLog << all << GetDescriptor() << ":" << endl;
334	int id = 0;
335
336	*fLog << all << "Succesfully calibrated pixels:" << endl;
337	*fLog << all << endl;
338
339	TIter Next(fPixels);
340	MCalibrationPix *pix;
341	while ((pix=(MCalibrationPix*)Next()))
342	{
343
344	if (pix->IsChargeValid() && !pix->IsExcluded() && !pix->IsOscillating() && pix->IsFitted())
345	{
346
347	*fLog << all << pix->GetPixId() << " Pedestals: " << pix->GetPed() << " +- "
348	<< pix->GetPedRms() << " Reduced Charge: " << pix->GetCharge() << " +- "
349	<< pix->GetSigmaCharge() << " Reduced Sigma: " << pix->GetRSigmaCharge()
350	<< " Nr Phe's: " << pix->GetPheFFactorMethod() << endl;
351	id++;
352	}
353	}
354
355	*fLog << all << id << " succesful pixels :-))" << endl;
356	id = 0;
357
358	*fLog << all << endl;
359	*fLog << all << "Pixels with errors:" << endl;
360	*fLog << all << endl;
361
362	TIter Next2(fPixels);
363	while ((pix=(MCalibrationPix*)Next2()))
364	{
365
366	if (!pix->IsChargeValid() && !pix->IsExcluded() && !pix->IsFitted())
367	{
368
369	*fLog << all << pix->GetPixId() << " Pedestals: " << pix->GetPed() << " +- "
370	<< pix->GetPedRms() << " Reduced Charge: " << pix->GetCharge() << " +- "
371	<< pix->GetSigmaCharge() << " Reduced Sigma: " << pix->GetRSigmaCharge() << endl;
372	id++;
373	}
374	}
375	*fLog << all << id << " pixels with errors :-((" << endl;
376
377	*fLog << all << endl;
378	*fLog << all << "Pixels with oscillations:" << endl;
379	*fLog << all << endl;
380
381	id = 0;
382
383	TIter Next3(fPixels);
384	while ((pix=(MCalibrationPix*)Next3()))
385	{
386
387	if (pix->IsOscillating() && !pix->IsExcluded())
388	{
389
390	*fLog << all << pix->GetPixId() << " Pedestals: " << pix->GetPed() << " +- "
391	<< pix->GetPedRms() << " Reduced Charge: " << pix->GetCharge() << " +- "
392	<< pix->GetSigmaCharge() << " Reduced Sigma: " << pix->GetRSigmaCharge() << endl;
393	id++;
394	}
395	}
396	*fLog << all << id << " Oscillating pixels :-((" << endl;
397
398
399	*fLog << all << endl;
400	*fLog << all << "Excluded pixels:" << endl;
401	*fLog << all << endl;
402
403	TIter Next4(fPixels);
404	while ((pix=(MCalibrationPix*)Next4()))
405	if (pix->IsExcluded())
406	*fLog << all << pix->GetPixId() << endl;
407
408	*fLog << all << fNumExcludedPixels << " excluded pixels " << endl;
409	}
410
411	// --------------------------------------------------------------------------
412	//
413	// Return true if pixel is inside bounds of the TClonesArray fPixels
414	//
415	Bool_t MCalibrationCam::IsPixelUsed(Int_t idx) const
416	{
417	if (!CheckBounds(idx))
418	return kFALSE;
419
420	return kTRUE;
421	}
422
423	// --------------------------------------------------------------------------
424	//
425	// Return true if pixel has already been fitted once (independent of the result)
426	//
427	Bool_t MCalibrationCam::IsPixelFitted(Int_t idx) const
428	{
429
430	if (!CheckBounds(idx))
431	return kFALSE;
432
433	return (*this)[idx].IsFitted();
434	}
435
436	// --------------------------------------------------------------------------
437	//
438	// Sets the user ranges of all histograms such that
439	// empty bins at the edges are not used. Additionally, it rebins the
440	// histograms such that in total, 50 bins are used.
441	//
442	void MCalibrationCam::CutEdges()
443	{
444
445	fBlindPixel->GetHist()->CutAllEdges();
446	fPINDiode->GetHist()->CutAllEdges();
447
448	TIter Next(fPixels);
449	MCalibrationPix *pix;
450	while ((pix=(MCalibrationPix*)Next()))
451	{
452	pix->GetHist()->CutAllEdges();
453	}
454
455	return;
456	}
457
458	// --------------------------------------------------------------------------
459	//
460	// The types are as follows:
461	//
462	// Fitted values:
463	// ==============
464	//
465	// 0: Fitted Charge
466	// 1: Error of fitted Charge
467	// 2: Sigma of fitted Charge
468	// 3: Error of Sigma of fitted Charge
469	//
470	// Useful variables derived from the fit results:
471	// =============================================
472	//
473	// 4: Returned probability of Gauss fit to Charge distribution
474	// 5: Reduced Sigma of fitted Charge --> sqrt(sigma_Q^2 - PedRMS^2)
475	// 6: Error Reduced Sigma of fitted Charge
476	// 7: Reduced Sigma per Charge
477	// 8: Error of Reduced Sigma per Charge
478	//
479	// Results of the different calibration methods:
480	// =============================================
481	//
482	// 9: Number of Photo-electrons obtained with the F-Factor method
483	// 10: Error on Number of Photo-electrons obtained with the F-Factor method
484	// 11: Mean conversion factor obtained with the F-Factor method
485	// 12: Error on the mean conversion factor obtained with the F-Factor method
486	// 13: Overall F-Factor of the readout obtained with the F-Factor method
487	// 14: Error on Overall F-Factor of the readout obtained with the F-Factor method
488	// 15: Number of Photons inside Plexiglass obtained with the Blind Pixel method
489	// 16: Error on Number of Photons inside Plexiglass obtained with the Blind Pixel method
490	// 17: Mean conversion factor obtained with the Blind Pixel method
491	// 18: Error on the mean conversion factor obtained with the Blind Pixel method
492	// 19: Overall F-Factor of the readout obtained with the Blind Pixel method
493	// 20: Error on Overall F-Factor of the readout obtained with the Blind Pixel method
494	// 21: Number of Photons outside Plexiglass obtained with the PIN Diode method
495	// 22: Error on Number of Photons outside Plexiglass obtained with the PIN Diode method
496	// 23: Mean conversion factor obtained with the PIN Diode method
497	// 24: Error on the mean conversion factor obtained with the PIN Diode method
498	// 25: Overall F-Factor of the readout obtained with the PIN Diode method
499	// 26: Error on Overall F-Factor of the readout obtained with the PIN Diode method
500	//
501	// Localized defects:
502	// ==================
503	//
504	// 27: Excluded Pixels
505	// 28: Pixels where the fit did not succeed --> results obtained only from the histograms
506	// 29: Pixels with succeeded fit, but apparently wrong results
507	// 30: Pixels with un-expected behavior in the fourier spectrum (e.g. oscillations)
508	//
509	// Other classifications of pixels:
510	// ================================
511	//
512	// 31: Pixels with saturated Hi-Gain
513	//
514	// Classification of validity of the calibrations:
515	// ===============================================
516	//
517	// 32: Pixels with valid calibration by the F-Factor-Method
518	// 33: Pixels with valid calibration by the Blind Pixel-Method
519	// 34: Pixels with valid calibration by the PIN Diode-Method
520	//
521	// Used Pedestals:
522	// ===============
523	//
524	// 35: Mean Pedestal over the entire range of signal extraction
525	// 36: Error on the Mean Pedestal over the entire range of signal extraction
526	// 37: Pedestal RMS over the entire range of signal extraction
527	// 38: Error on the Pedestal RMS over the entire range of signal extraction
528	//
529	// Calculated absolute arrival times (very low precision!):
530	// ========================================================
531	//
532	// 39: Absolute Arrival time of the signal
533	// 40: Error on the Absolute Arrival time of the signal
534	// 41: RMS of the Absolute Arrival time of the signal
535	// 42: Error on the RMS of the Absolute Arrival time of the signal
536	//
537	Bool_t MCalibrationCam::GetPixelContent(Double_t &val, Int_t idx, const MGeomCam &cam, Int_t type) const
538	{
539
540	if (idx > GetSize())
541	return kFALSE;
542
543	Float_t area = cam[idx].GetA();
544
545	if (area == 0)
546	return kFALSE;
547
548	switch (type)
549	{
550	case 0:
551	if ((*this)[idx].IsExcluded())
552	return kFALSE;
553	val = (*this)[idx].GetCharge();
554	break;
555	case 1:
556	if ((*this)[idx].IsExcluded())
557	return kFALSE;
558	val = (*this)[idx].GetErrCharge();
559	break;
560	case 2:
561	if ((*this)[idx].IsExcluded())
562	return kFALSE;
563	val = (*this)[idx].GetSigmaCharge();
564	break;
565	case 3:
566	if ((*this)[idx].IsExcluded())
567	return kFALSE;
568	val = (*this)[idx].GetErrSigmaCharge();
569	break;
570	case 4:
571	if ((*this)[idx].IsExcluded())
572	return kFALSE;
573	val = (*this)[idx].GetChargeProb();
574	break;
575	case 5:
576	if ((*this)[idx].IsExcluded())
577	return kFALSE;
578	val = (*this)[idx].GetRSigmaCharge();
579	break;
580	case 6:
581	if ((*this)[idx].IsExcluded())
582	return kFALSE;
583	val = (*this)[idx].GetErrRSigmaCharge();
584	break;
585	case 7:
586	if ((*this)[idx].IsExcluded())
587	return kFALSE;
588	val = (this)[idx].GetRSigmaCharge() / (this)[idx].GetCharge();
589	break;
590	case 8:
591	if ((*this)[idx].IsExcluded())
592	return kFALSE;
593	// relative error RsigmaCharge square
594	val = (this)[idx].GetErrRSigmaCharge() (*this)[idx].GetErrRSigmaCharge()
595	/ ((this)[idx].GetRSigmaCharge() (*this)[idx].GetRSigmaCharge() );
596	// relative error Charge square
597	val += (this)[idx].GetErrCharge() (*this)[idx].GetErrCharge()
598	/ ((this)[idx].GetCharge() (*this)[idx].GetCharge() );
599	// calculate relative error out of squares
600	val = TMath::Sqrt(val) ;
601	// multiply with value to get absolute error
602	val = (this)[idx].GetRSigmaCharge() / (*this)[idx].GetCharge();
603	break;
604	case 9:
605	if ((*this)[idx].IsExcluded())
606	return kFALSE;
607	val = (*this)[idx].GetPheFFactorMethod();
608	break;
609	case 10:
610	if ((*this)[idx].IsExcluded())
611	return kFALSE;
612	val = (*this)[idx].GetPheFFactorMethodError();
613	break;
614	case 11:
615	if ((*this)[idx].IsExcluded())
616	return kFALSE;
617	val = (*this)[idx].GetMeanConversionFFactorMethod();
618	break;
619	case 12:
620	if ((*this)[idx].IsExcluded())
621	return kFALSE;
622	val = (*this)[idx].GetErrorConversionFFactorMethod();
623	break;
624	case 13:
625	if ((*this)[idx].IsExcluded())
626	return kFALSE;
627	val = (*this)[idx].GetTotalFFactorFFactorMethod();
628	break;
629	case 14:
630	if ((*this)[idx].IsExcluded())
631	return kFALSE;
632	val = (*this)[idx].GetTotalFFactorErrorFFactorMethod();
633	break;
634	case 15:
635	if ((*this)[idx].IsExcluded())
636	return kFALSE;
637	val = GetMeanFluxInsidePlexiglass()*area;
638	break;
639	case 16:
640	if ((*this)[idx].IsExcluded())
641	return kFALSE;
642	val = GetMeanFluxInsidePlexiglass()*area;
643	break;
644	case 17:
645	if ((*this)[idx].IsExcluded())
646	return kFALSE;
647	val = (*this)[idx].GetMeanConversionBlindPixelMethod();
648	break;
649	case 18:
650	if ((*this)[idx].IsExcluded())
651	return kFALSE;
652	val = (*this)[idx].GetErrorConversionBlindPixelMethod();
653	break;
654	case 19:
655	if ((*this)[idx].IsExcluded())
656	return kFALSE;
657	val = (*this)[idx].GetTotalFFactorBlindPixelMethod();
658	break;
659	case 20:
660	if ((*this)[idx].IsExcluded())
661	return kFALSE;
662	val = (*this)[idx].GetTotalFFactorErrorBlindPixelMethod();
663	break;
664	case 21:
665	if ((*this)[idx].IsExcluded())
666	return kFALSE;
667	val = GetMeanFluxOutsidePlexiglass()*area;
668	break;
669	case 22:
670	if ((*this)[idx].IsExcluded())
671	return kFALSE;
672	val = GetMeanFluxOutsidePlexiglass()*area;
673	break;
674	case 23:
675	if ((*this)[idx].IsExcluded())
676	return kFALSE;
677	val = (*this)[idx].GetMeanConversionPINDiodeMethod();
678	break;
679	case 24:
680	if ((*this)[idx].IsExcluded())
681	return kFALSE;
682	val = (*this)[idx].GetErrorConversionPINDiodeMethod();
683	break;
684	case 25:
685	if ((*this)[idx].IsExcluded())
686	return kFALSE;
687	val = (*this)[idx].GetTotalFFactorBlindPixelMethod();
688	break;
689	case 26:
690	if ((*this)[idx].IsExcluded())
691	return kFALSE;
692	val = (*this)[idx].GetTotalFFactorErrorBlindPixelMethod();
693	break;
694	case 27:
695	if ((*this)[idx].IsExcluded())
696	val = 1.;
697	else
698	return kFALSE;
699	break;
700	case 28:
701	if ((*this)[idx].IsExcluded())
702	return kFALSE;
703	if (!(*this)[idx].IsFitted())
704	val = 1;
705	else
706	return kFALSE;
707	break;
708	case 29:
709	if ((*this)[idx].IsExcluded())
710	return kFALSE;
711	if (!(*this)[idx].IsFitted())
712	return kFALSE;
713	if (!(*this)[idx].IsChargeValid())
714	val = 1;
715	else
716	return kFALSE;
717	break;
718	case 30:
719	if ((*this)[idx].IsExcluded())
720	return kFALSE;
721	if ((*this)[idx].IsOscillating())
722	val = 1;
723	else
724	return kFALSE;
725	break;
726	case 31:
727	if ((*this)[idx].IsExcluded())
728	return kFALSE;
729	if ((*this)[idx].IsHiGainSaturation())
730	val = 1;
731	else
732	return kFALSE;
733	break;
734	case 32:
735	if ((*this)[idx].IsExcluded())
736	return kFALSE;
737	if ((*this)[idx].IsFFactorMethodValid())
738	val = 1;
739	else
740	return kFALSE;
741	break;
742	case 33:
743	if ((*this)[idx].IsExcluded())
744	return kFALSE;
745	if ((*this)[idx].IsBlindPixelMethodValid())
746	val = 1;
747	else
748	return kFALSE;
749	break;
750	case 34:
751	if ((*this)[idx].IsExcluded())
752	return kFALSE;
753	if ((*this)[idx].IsPINDiodeMethodValid())
754	val = 1;
755	else
756	return kFALSE;
757	break;
758	case 35:
759	if ((*this)[idx].IsExcluded())
760	return kFALSE;
761	val = (*this)[idx].GetPed();
762	break;
763	case 36:
764	if ((*this)[idx].IsExcluded())
765	return kFALSE;
766	val = 1.;
767	// val = (*this)[idx].GetPedError();
768	break;
769	case 37:
770	if ((*this)[idx].IsExcluded())
771	return kFALSE;
772	val = (*this)[idx].GetPedRms();
773	break;
774	case 38:
775	if ((*this)[idx].IsExcluded())
776	return kFALSE;
777	val = 1.;
778	// val = (*this)[idx].GetPedRmsError();
779	break;
780	case 39:
781	if ((*this)[idx].IsExcluded())
782	return kFALSE;
783	val = (*this)[idx].GetAbsTimeMean();
784	break;
785	case 40:
786	if ((*this)[idx].IsExcluded())
787	return kFALSE;
788	val = (*this)[idx].GetAbsTimeMeanErr();
789	break;
790	case 41:
791	if ((*this)[idx].IsExcluded())
792	return kFALSE;
793	val = (*this)[idx].GetAbsTimeRms();
794	break;
795	case 42:
796	if ((*this)[idx].IsExcluded())
797	return kFALSE;
798	val = (*this)[idx].GetAbsTimeMeanErr()/TMath::Sqrt(2.);
799	break;
800	default:
801	return kFALSE;
802	}
803	return val!=-1.;
804	}
805
806	// --------------------------------------------------------------------------
807	//
808	// What MHCamera needs in order to draw an individual pixel in the camera
809	//
810	void MCalibrationCam::DrawPixelContent(Int_t idx) const
811	{
812	(*this)[idx].Draw();
813	}
814
815
816	// --------------------------------------------------------------------------
817	//
818	//
819	//
820	Bool_t MCalibrationCam::CalcFluxInsidePlexiglass()
821	{
822
823	if (!fBlindPixel->IsFitOK())
824	return kFALSE;
825
826	const Float_t mean = fBlindPixel->GetLambda();
827	const Float_t merr = fBlindPixel->GetErrLambda();
828
829	//
830	// Start calculation of number of photons
831	//
832	// The blind pixel has exactly 100 mm^2 area (with negligible error),
833	//
834	fMeanFluxInsidePlexiglass = mean*gkBlindPixelArea;
835
836	// Start calculation of number of photons relative Variance (!!)
837	fMeanFluxErrInsidePlexiglass = merr*merr/mean/mean;
838
839	switch (fColor)
840	{
841	case kECGreen:
842	fMeanFluxInsidePlexiglass /= gkCalibrationBlindPixelQEGreen;
843	fMeanFluxErrInsidePlexiglass += gkCalibrationBlindPixelQEGreenError*gkCalibrationBlindPixelQEGreenError
844	/ gkCalibrationBlindPixelQEGreen / gkCalibrationBlindPixelQEGreen;
845
846	fMeanFluxInsidePlexiglass *= TMath::Power(10,gkCalibrationBlindPixelAttGreen); // correct for absorption
847	// attenuation has negligible error
848	break;
849	case kECBlue:
850	fMeanFluxInsidePlexiglass /= gkCalibrationBlindPixelQEBlue;
851	fMeanFluxErrInsidePlexiglass += gkCalibrationBlindPixelQEBlueError*gkCalibrationBlindPixelQEBlueError
852	/ gkCalibrationBlindPixelQEBlue / gkCalibrationBlindPixelQEBlue;
853
854	fMeanFluxInsidePlexiglass *= TMath::Power(10,gkCalibrationBlindPixelAttBlue); // correct for absorption
855	// attenuation has negligible error
856	break;
857	case kECUV:
858	fMeanFluxInsidePlexiglass /= gkCalibrationBlindPixelQEUV;
859	fMeanFluxErrInsidePlexiglass += gkCalibrationBlindPixelQEUVError*gkCalibrationBlindPixelQEUVError
860	/ gkCalibrationBlindPixelQEUV / gkCalibrationBlindPixelQEUV;
861
862	fMeanFluxInsidePlexiglass *= TMath::Power(10,gkCalibrationBlindPixelAttUV); // correct for absorption
863	// attenuation has negligible error
864	break;
865	case kECCT1:
866	default:
867	fMeanFluxInsidePlexiglass /= gkCalibrationBlindPixelQECT1;
868	fMeanFluxErrInsidePlexiglass += gkCalibrationBlindPixelQECT1Error*gkCalibrationBlindPixelQECT1Error
869	/ gkCalibrationBlindPixelQECT1 / gkCalibrationBlindPixelQECT1;
870
871	fMeanFluxInsidePlexiglass *= TMath::Power(10,gkCalibrationBlindPixelAttCT1); // correct for absorption
872	// attenuation has negligible error
873	break;
874	}
875
876	*fLog << inf << endl;
877	*fLog << inf << " Photon flux [ph/mm^2] inside Plexiglass: "
878	<< fMeanFluxInsidePlexiglass << endl;
879
880	if (fMeanFluxInsidePlexiglass > 0.)
881	SETBIT(fFlags,kFluxInsidePlexiglassAvailable);
882	else
883	{
884	CLRBIT(fFlags,kFluxInsidePlexiglassAvailable);
885	return kFALSE;
886	}
887
888	if (fMeanFluxErrInsidePlexiglass < 0.)
889	{
890	*fLog << warn << " Relative Variance on Photon flux inside Plexiglass: "
891	<< fMeanFluxErrInsidePlexiglass << endl;
892	CLRBIT(fFlags,kFluxInsidePlexiglassAvailable);
893	return kFALSE;
894	}
895
896	// Finish calculation of errors -> convert from relative variance to absolute error
897	fMeanFluxErrInsidePlexiglass = TMath::Sqrt(fMeanFluxErrInsidePlexiglass);
898	fMeanFluxErrInsidePlexiglass *= fMeanFluxInsidePlexiglass;
899
900	*fLog << inf << " Error on photon flux [ph/mm^2] inside Plexiglass: "
901	<< fMeanFluxErrInsidePlexiglass << endl;
902	*fLog << inf << endl;
903
904	TIter Next(fPixels);
905	MCalibrationPix *pix;
906	while ((pix=(MCalibrationPix*)Next()))
907	{
908
909	if(pix->IsChargeValid())
910	{
911
912	const Int_t idx = pix->GetPixId();
913
914	const Float_t charge = pix->GetCharge();
915	const Float_t area = (*fGeomCam)[idx].GetA();
916	const Float_t chargeerr = pix->GetErrCharge();
917
918	const Float_t nphot = fMeanFluxInsidePlexiglass*area;
919	const Float_t nphoterr = fMeanFluxErrInsidePlexiglass*area;
920	const Float_t conversion = nphot/charge;
921	Float_t conversionerr;
922
923	conversionerr = nphoterr/charge
924	* nphoterr/charge ;
925	conversionerr += chargeerr/charge
926	* chargeerr/charge
927	* conversion*conversion;
928	conversionerr = TMath::Sqrt(conversionerr);
929
930	const Float_t conversionsigma = 0.;
931
932	pix->SetConversionBlindPixelMethod(conversion, conversionerr, conversionsigma);
933
934	if (conversionerr/conversion < 0.1)
935	pix->SetBlindPixelMethodValid();
936	}
937	}
938	return kTRUE;
939	}
940
941
942	Bool_t MCalibrationCam::CalcFluxOutsidePlexiglass()
943	{
944
945	if (!fPINDiode->IsChargeFitValid())
946	return kFALSE;
947
948	const Float_t mean = fPINDiode->GetCharge();
949	const Float_t merr = fPINDiode->GetErrCharge();
950
951	// Start calculation of number of photons per mm^2 on the camera
952	fMeanFluxOutsidePlexiglass = mean * gkPINDiodeArea;
953	// Correct for the distance between camera and PIN Diode and for different areas.
954	fMeanFluxOutsidePlexiglass *= gkCalibrationFluxCameravsPINDiode;
955
956	// Start calculation of number of photons relative Variance (!!)
957	fMeanFluxErrOutsidePlexiglass = merr*merr/mean/mean;
958	fMeanFluxErrOutsidePlexiglass += gkCalibrationFluxCameravsPINDiodeError*gkCalibrationFluxCameravsPINDiodeError
959	/ gkCalibrationFluxCameravsPINDiode/gkCalibrationFluxCameravsPINDiode;
960
961	switch (fColor)
962	{
963	case kECGreen:
964	fMeanFluxOutsidePlexiglass /= gkCalibrationPINDiodeQEGreen;
965	fMeanFluxErrOutsidePlexiglass += gkCalibrationPINDiodeQEGreenError*gkCalibrationPINDiodeQEGreenError
966	/ gkCalibrationPINDiodeQEGreen/gkCalibrationPINDiodeQEGreen;
967	break;
968	case kECBlue:
969	fMeanFluxOutsidePlexiglass /= gkCalibrationPINDiodeQEBlue;
970	fMeanFluxErrOutsidePlexiglass += gkCalibrationPINDiodeQEBlueError*gkCalibrationPINDiodeQEBlueError
971	/ gkCalibrationPINDiodeQEBlue/gkCalibrationPINDiodeQEBlue;
972	break;
973	case kECUV:
974	fMeanFluxOutsidePlexiglass /= gkCalibrationPINDiodeQEUV;
975	fMeanFluxErrOutsidePlexiglass += gkCalibrationPINDiodeQEUVError*gkCalibrationPINDiodeQEUVError
976	/ gkCalibrationPINDiodeQEUV/gkCalibrationPINDiodeQEUV;
977	break;
978	case kECCT1:
979	default:
980	fMeanFluxOutsidePlexiglass /= gkCalibrationPINDiodeQECT1;
981	fMeanFluxErrOutsidePlexiglass += gkCalibrationPINDiodeQECT1Error*gkCalibrationPINDiodeQECT1Error
982	/ gkCalibrationPINDiodeQECT1/gkCalibrationPINDiodeQECT1;
983	break;
984	}
985
986
987	*fLog << inf << endl;
988	*fLog << inf << " Mean Photon flux [ph/mm^2] outside Plexiglass: "
989	<< fMeanFluxOutsidePlexiglass << endl;
990
991	if (fMeanFluxOutsidePlexiglass > 0.)
992	SETBIT(fFlags,kFluxOutsidePlexiglassAvailable);
993	else
994	{
995	CLRBIT(fFlags,kFluxOutsidePlexiglassAvailable);
996	return kFALSE;
997	}
998
999	if (fMeanFluxErrOutsidePlexiglass < 0.)
1000	{
1001	*fLog << warn << "Relative Variance on Photon flux outside Plexiglass: "
1002	<< fMeanFluxErrOutsidePlexiglass << endl;
1003	CLRBIT(fFlags,kFluxOutsidePlexiglassAvailable);
1004	return kFALSE;
1005	}
1006
1007	// Finish calculation of errors -> convert from relative variance to absolute error
1008	fMeanFluxErrOutsidePlexiglass = TMath::Sqrt(fMeanFluxErrOutsidePlexiglass);
1009	fMeanFluxErrOutsidePlexiglass *= fMeanFluxOutsidePlexiglass;
1010
1011	*fLog << inf << " Error on Photon flux [ph/mm^2] outside Plexiglass: "
1012	<< fMeanFluxErrOutsidePlexiglass << endl;
1013	*fLog << inf << endl;
1014
1015	TIter Next(fPixels);
1016	MCalibrationPix *pix;
1017	while ((pix=(MCalibrationPix*)Next()))
1018	{
1019
1020	if (pix->IsChargeValid())
1021	{
1022
1023	const Int_t idx = pix->GetPixId();
1024
1025	const Float_t charge = pix->GetCharge();
1026	const Float_t area = (*fGeomCam)[idx].GetA();
1027	const Float_t chargeerr = pix->GetErrCharge();
1028
1029	const Float_t nphot = fMeanFluxOutsidePlexiglass*area;
1030	const Float_t nphoterr = fMeanFluxErrOutsidePlexiglass*area;
1031	const Float_t conversion = nphot/charge;
1032
1033	Float_t conversionerr;
1034
1035	conversionerr = nphoterr/charge
1036	* nphoterr/charge ;
1037	conversionerr += chargeerr/charge
1038	* chargeerr/charge
1039	* conversion*conversion;
1040	if (conversionerr > 0.)
1041	conversionerr = TMath::Sqrt(conversionerr);
1042
1043	const Float_t conversionsigma = 0.;
1044
1045	pix->SetConversionPINDiodeMethod(conversion, conversionerr, conversionsigma);
1046
1047	if (conversionerr/conversion < 0.1)
1048	pix->SetPINDiodeMethodValid();
1049
1050	}
1051	}
1052	return kTRUE;
1053	}
1054
1055
1056
1057	Bool_t MCalibrationCam::GetConversionFactorBlindPixel(Int_t ipx, Float_t &mean, Float_t &err, Float_t &sigma)
1058	{
1059
1060	if (ipx < 0 \|\| !IsPixelFitted(ipx))
1061	return kFALSE;
1062
1063	if (!IsFluxInsidePlexiglassAvailable())
1064	if (!CalcFluxInsidePlexiglass())
1065	return kFALSE;
1066
1067	mean = (*this)[ipx].GetMeanConversionBlindPixelMethod();
1068	err = (*this)[ipx].GetErrorConversionBlindPixelMethod();
1069	sigma = (*this)[ipx].GetSigmaConversionBlindPixelMethod();
1070
1071	return kTRUE;
1072	}
1073
1074
1075	Bool_t MCalibrationCam::GetConversionFactorFFactor(Int_t ipx, Float_t &mean, Float_t &err, Float_t &sigma)
1076	{
1077
1078	if (ipx < 0 \|\| !IsPixelFitted(ipx))
1079	return kFALSE;
1080
1081	Float_t conv = (*this)[ipx].GetMeanConversionFFactorMethod();
1082
1083	if (conv < 0.)
1084	return kFALSE;
1085
1086	mean = conv;
1087	err = (*this)[ipx].GetErrorConversionFFactorMethod();
1088	sigma = (*this)[ipx].GetSigmaConversionFFactorMethod();
1089
1090	return kTRUE;
1091	}
1092
1093
1094	//-----------------------------------------------------------------------------------
1095	//
1096	// Calculates the conversion factor between the integral of FADCs slices
1097	// (as defined in the signal extractor MExtractSignal.cc)
1098	// and the number of photons reaching the plexiglass for one Inner Pixel
1099	//
1100	// FIXME: The PINDiode is still not working and so is the code
1101	//
1102	Bool_t MCalibrationCam::GetConversionFactorPINDiode(Int_t ipx, Float_t &mean, Float_t &err, Float_t &sigma)
1103	{
1104
1105	if (ipx < 0 \|\| !IsPixelFitted(ipx))
1106	return kFALSE;
1107
1108	if (!IsFluxOutsidePlexiglassAvailable())
1109	if (!CalcFluxOutsidePlexiglass())
1110	return kFALSE;
1111
1112	mean = (*this)[ipx].GetMeanConversionPINDiodeMethod();
1113	err = (*this)[ipx].GetErrorConversionPINDiodeMethod();
1114	sigma = (*this)[ipx].GetSigmaConversionPINDiodeMethod();
1115
1116	return kFALSE;
1117
1118	}
1119
1120	//-----------------------------------------------------------------------------------
1121	//
1122	// Calculates the best combination of the three used methods possible
1123	// between the integral of FADCs slices
1124	// (as defined in the signal extractor MExtractSignal.cc)
1125	// and the number of photons reaching one Inner Pixel.
1126	// The procedure is not yet defined.
1127	//
1128	// FIXME: The PINDiode is still not working and so is the code
1129	//
1130	Bool_t MCalibrationCam::GetConversionFactorCombined(Int_t ipx, Float_t &mean, Float_t &err, Float_t &sigma)
1131	{
1132
1133	if (ipx < 0 \|\| !IsPixelFitted(ipx))
1134	return kFALSE;
1135
1136	return kFALSE;
1137
1138	}
1139
1140
1141	void MCalibrationCam::DrawHiLoFits()
1142	{
1143
1144	if (!fOffsets)
1145	fOffsets = new TH1D("pp","Offsets of the HiGain LoGain Fit",100,-600.,400.);
1146	if (!fSlopes)
1147	fSlopes = new TH1D("mm","Slopes of the HiGain LoGain Fit",100,-2.,2.);
1148	if (!fOffvsSlope)
1149	fOffvsSlope = new TH2D("aa","Slopes vs Offsets of the HiGain LoGain Fit",100,-600.,400.,100,-2.,2.);
1150
1151	TIter Next(fPixels);
1152	MCalibrationPix *pix;
1153	MHCalibrationPixel *hist;
1154	while ((pix=(MCalibrationPix*)Next()))
1155	{
1156	hist = pix->GetHist();
1157	hist->FitHiGainvsLoGain();
1158	fOffsets->Fill(hist->GetOffset(),1.);
1159	fSlopes->Fill(hist->GetSlope(),1.);
1160	fOffvsSlope->Fill(hist->GetOffset(),hist->GetSlope(),1.);
1161	}
1162
1163	TCanvas *c1 = new TCanvas();
1164
1165	c1->Divide(1,3);
1166	c1->cd(1);
1167	fOffsets->Draw();
1168	gPad->Modified();
1169	gPad->Update();
1170
1171	c1->cd(2);
1172	fSlopes->Draw();
1173	gPad->Modified();
1174	gPad->Update();
1175
1176	c1->cd(3);
1177	fOffvsSlope->Draw("col1");
1178	gPad->Modified();
1179	gPad->Update();
1180	}
1181

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