1 | /* ======================================================================== *\
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2 | !
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3 | ! *
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4 | ! * This file is part of MARS, the MAGIC Analysis and Reconstruction
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5 | ! * Software. It is distributed to you in the hope that it can be a useful
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6 | ! * and timesaving tool in analysing Data of imaging Cerenkov telescopes.
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7 | ! * It is distributed WITHOUT ANY WARRANTY.
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8 | ! *
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9 | ! * Permission to use, copy, modify and distribute this software and its
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10 | ! * documentation for any purpose is hereby granted without fee,
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11 | ! * provided that the above copyright notice appear in all copies and
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12 | ! * that both that copyright notice and this permission notice appear
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13 | ! * in supporting documentation. It is provided "as is" without express
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14 | ! * or implied warranty.
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15 | ! *
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16 | !
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17 | !
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18 | ! Author(s): Thomas Bretz, 1/2004 <mailto:tbretz@astro.uni-wuerzburg.de>
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19 | !
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20 | ! Copyright: MAGIC Software Development, 2000-2004
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21 | !
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22 | !
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23 | \* ======================================================================== */
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24 |
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25 | /////////////////////////////////////////////////////////////////////////////
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26 | //
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27 | // MJCalibrateSignal
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28 | //
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29 | // This class is reading the output written by callisto. It calibrates
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30 | // signal and time.
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31 | //
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32 | // The signal and time extractors are read from the callisto-output. In
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33 | // pricipal you could overwrite these default using the resource file,
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34 | // but this is NOT recommended!
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35 | //
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36 | /////////////////////////////////////////////////////////////////////////////
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37 | #include "MJCalibrateSignal.h"
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38 |
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39 | #include <TEnv.h>
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40 | #include <TFile.h>
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41 |
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42 | #include "MLog.h"
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43 | #include "MLogManip.h"
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44 |
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45 | #include "MDirIter.h"
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46 | #include "MParList.h"
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47 | #include "MTaskList.h"
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48 | #include "MEvtLoop.h"
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49 |
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50 | #include "MStatusDisplay.h"
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51 |
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52 | #include "MGeomCam.h"
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53 | #include "MHCamEvent.h"
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54 | #include "MPedestalCam.h"
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55 | #include "MBadPixelsCam.h"
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56 |
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57 | #include "MCalibrationQECam.h"
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58 | #include "MCalibrationBlindCam.h"
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59 | #include "MCalibrationChargeCam.h"
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60 | #include "MCalibrationRelTimeCam.h"
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61 | #include "MCalibrationChargePINDiode.h"
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62 |
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63 | #include "MReadReports.h"
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64 | #include "MReadMarsFile.h"
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65 | #include "MRawFileRead.h"
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66 | #include "MGeomApply.h"
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67 | #include "MMcPedestalCopy.h"
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68 | #include "MPointingPosCalc.h"
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69 | #include "MPedCalcFromLoGain.h"
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70 | #include "MExtractor.h"
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71 | #include "MTaskEnv.h"
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72 | #include "MCalibrateData.h"
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73 | #include "MCalibrateRelTimes.h"
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74 | #include "MBadPixelsMerge.h"
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75 | #include "MBadPixelsCalc.h"
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76 | #include "MBadPixelsTreat.h"
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77 | #include "MFillH.h"
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78 | #include "MWriteRootFile.h"
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79 |
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80 | ClassImp(MJCalibrateSignal);
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81 |
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82 | using namespace std;
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83 |
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84 | // --------------------------------------------------------------------------
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85 | //
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86 | // Default constructor.
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87 | //
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88 | // Sets fRuns to 0, fExtractor to NULL, fDataCheck to kFALSE
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89 | //
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90 | MJCalibrateSignal::MJCalibrateSignal(const char *name, const char *title)
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91 | : fIsDataCheck(kFALSE)
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92 | {
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93 | fName = name ? name : "MJCalibrateSignal";
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94 | fTitle = title ? title : "Tool to calibrate data";
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95 | }
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96 |
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97 | Bool_t MJCalibrateSignal::WriteResult()
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98 | {
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99 | if (fPathOut.IsNull())
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100 | {
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101 | *fLog << inf << "No output path specified via SetPathOut - no output written." << endl;
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102 | return kTRUE;
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103 | }
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104 |
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105 | const TString oname = Form("%s/signal%06d.root", (const char*)fPathOut, fSequence.GetSequence());
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106 |
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107 | *fLog << inf << "Writing to file: " << oname << endl;
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108 |
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109 | TFile file(oname, "RECREATE");
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110 |
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111 | *fLog << inf << " - MStatusDisplay..." << flush;
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112 | if (fDisplay && fDisplay->Write()<=0)
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113 | {
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114 | *fLog << err << "Unable to write MStatusDisplay to " << oname << endl;
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115 | return kFALSE;
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116 | }
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117 | *fLog << inf << "ok." << endl;
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118 |
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119 | return kTRUE;
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120 | }
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121 |
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122 | Bool_t MJCalibrateSignal::ReadCalibration(TObjArray &l, MBadPixelsCam &cam, MExtractor* &ext1, MExtractor* &ext2, TString &geom) const
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123 | {
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124 | const TString fname = Form("%s/calib%06d.root", fPathIn.Data(), fSequence.GetSequence());
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125 |
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126 | *fLog << inf << "Reading from file: " << fname << endl;
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127 |
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128 | TFile file(fname, "READ");
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129 | if (!file.IsOpen())
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130 | {
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131 | *fLog << err << dbginf << "ERROR - Could not open file " << fname << endl;
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132 | return kFALSE;
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133 | }
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134 |
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135 | TObject *o = file.Get("ExtractSignal");
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136 | if (o && !o->InheritsFrom(MExtractor::Class()))
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137 | {
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138 | *fLog << err << dbginf << "ERROR - ExtractSignal read from " << fname << " doesn't inherit from MExtractor!" << endl;
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139 | return kFALSE;
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140 | }
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141 | ext1 = o ? (MExtractor*)o->Clone() : NULL;
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142 |
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143 | o = file.Get("ExtractTime");
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144 | if (o && !o->InheritsFrom(MExtractor::Class()))
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145 | {
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146 | *fLog << err << dbginf << "ERROR - ExtractTime read from " << fname << " doesn't inherit from MExtractor!" << endl;
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147 | return kFALSE;
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148 | }
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149 | ext2 = o ? (MExtractor*)o->Clone() : NULL;
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150 | if (!ext1 && !ext2)
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151 | {
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152 | *fLog << err << dbginf << "ERROR - Neither ExtractSignal nor ExrtractTime found in " << fname << "!" << endl;
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153 | return kFALSE;
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154 | }
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155 |
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156 | o = file.Get("MGeomCam");
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157 | if (o && !o->InheritsFrom(MGeomCam::Class()))
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158 | {
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159 | *fLog << err << dbginf << "ERROR - MGeomCam read from " << fname << " doesn't inherit from MGeomCam!" << endl;
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160 | return kFALSE;
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161 | }
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162 | geom = o ? o->ClassName() : "";
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163 |
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164 | TObjArray cont(l);
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165 | cont.Add(&cam);
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166 | return ReadContainer(cont);
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167 | }
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168 |
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169 | // --------------------------------------------------------------------------
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170 | //
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171 | // MJCalibration allows to setup several option by a resource file:
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172 | // MJCalibrateSignal.DataCheck: yes,no
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173 | //
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174 | // For more details see the class description and the corresponding Getters
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175 | //
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176 | Bool_t MJCalibrateSignal::CheckEnvLocal()
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177 | {
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178 | SetDataCheck(GetEnv("DataCheck", IsDataCheck()));
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179 | return kTRUE;
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180 | }
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181 |
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182 | Bool_t MJCalibrateSignal::ProcessFile(MPedestalCam &pedcamab, MPedestalCam &pedcam)
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183 | {
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184 | if (!fSequence.IsValid())
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185 | {
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186 | *fLog << err << "ERROR - Sequence invalid!" << endl;
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187 | return kFALSE;
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188 | }
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189 |
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190 | //if (!CheckEnv())
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191 | // return kFALSE;
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192 |
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193 | CheckEnv();
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194 |
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195 | // --------------------------------------------------------------------------------
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196 |
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197 | *fLog << inf;
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198 | fLog->Separator(GetDescriptor());
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199 | *fLog << "Calculate calibrated data from runs ";
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200 | *fLog << fSequence.GetName() << endl;
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201 | *fLog << endl;
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202 |
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203 | // --------------------------------------------------------------------------------
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204 |
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205 | MDirIter iter;
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206 | const Int_t n0 = fSequence.SetupDatRuns(iter, fPathData, "D", IsDataCheck());
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207 | const Int_t n1 = fSequence.GetNumDatRuns();
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208 | if (n0==0)
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209 | {
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210 | *fLog << err << "ERROR - No input files of sequence found!" << endl;
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211 | return kFALSE;
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212 | }
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213 | if (n0!=n1)
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214 | {
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215 | *fLog << err << "ERROR - Number of files found (" << n0 << ") doesn't match number of files in sequence (" << n1 << ")" << endl;
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216 | return kFALSE;
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217 | }
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218 |
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219 | // Read File
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220 | /*
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221 | MCalibrationIntensityChargeCam calcam;
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222 | MCalibrationIntensityQECam qecam;
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223 | MCalibrationIntensityBlindCam bndcam;
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224 | MCalibrationIntensityRelTimeCam tmcam;
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225 | */
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226 | MCalibrationChargeCam calcam;
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227 | MCalibrationQECam qecam;
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228 | MCalibrationBlindCam bndcam;
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229 | MCalibrationChargePINDiode pind;
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230 | MCalibrationRelTimeCam tmcam;
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231 | MBadPixelsCam badpix;
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232 |
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233 | MExtractor *extractor1=0;
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234 | MExtractor *extractor2=0;
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235 | TString geom;
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236 |
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237 | TObjArray calibcont;
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238 | calibcont.Add(&calcam);
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239 | calibcont.Add(&qecam);
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240 | calibcont.Add(&bndcam);
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241 | calibcont.Add(&pind);
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242 | calibcont.Add(&tmcam);
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243 |
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244 | if (!ReadCalibration(calibcont, badpix, extractor1, extractor2, geom))
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245 | return kFALSE;
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246 |
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247 | *fLog << all;
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248 | if (extractor1)
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249 | {
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250 | *fLog << underline << "Signal Extractor found in calibration file" << endl;
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251 | extractor1->Print();
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252 | *fLog << endl;
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253 | }
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254 | else
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255 | *fLog << inf << "No Signal Extractor: ExtractSignal in file." << endl;
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256 |
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257 | if (extractor2)
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258 | {
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259 | *fLog << underline << "Time Extractor found in calibration file" << endl;
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260 | extractor2->Print();
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261 | *fLog << endl;
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262 | }
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263 | else
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264 | *fLog << inf << "No Time Extractor: ExtractTime in file." << endl;
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265 |
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266 | if (!geom.IsNull())
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267 | *fLog << inf << "Camera geometry found in file: " << geom << endl;
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268 | else
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269 | *fLog << inf << "No Camera geometry found using default <MGeomCamMagic>" << endl;
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270 |
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271 | // This is necessary for the case in which it is not in the files
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272 | MBadPixelsCam badcam;
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273 |
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274 | // Setup Parlist
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275 | MParList plist;
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276 | plist.AddToList(this); // take care of fDisplay!
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277 | plist.AddToList(&badcam);
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278 | plist.AddToList(&pedcam);
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279 | plist.AddToList(&calibcont);
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280 |
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281 | // Setup Tasklist
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282 | MTaskList tlist;
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283 | plist.AddToList(&tlist);
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284 |
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285 | // FIXME: Move this to an intermediate class MJMagic
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286 | Byte_t filetype = 2;
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287 | /*
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288 | TString name = iter.Next();
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289 | Byte_t filetype = MRawFileRead::IsFileValid(name);
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290 | if (!filetype)
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291 | filetype = MReadMarsFile::IsFileValid(name)+1;
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292 | if (filetype<1||filetype>3)
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293 | {
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294 | gLog << err << "ERROR - FileType #" << (int)filetype << " of first file " << name << " unknown..." << endl;
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295 | return kFALSE;
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296 | } */
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297 | // 1 = raw-file
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298 | // 2 = raw-root file
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299 | // 3 = mc-raw file
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300 |
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301 | MReadReports readreal;
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302 | readreal.AddTree("Events", "MTime.", kTRUE);
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303 | readreal.AddTree("Trigger");
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304 | readreal.AddTree("Camera");
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305 | readreal.AddTree("Drive");
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306 | readreal.AddTree("CC");
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307 | readreal.AddTree("Currents");
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308 |
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309 | //MReadMarsFile read("Events");
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310 | //read.DisableAutoScheme();
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311 | MRawFileRead rawread(NULL);
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312 | if (IsDataCheck())
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313 | rawread.AddFiles(iter);
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314 | else
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315 | readreal.AddFiles(iter);
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316 |
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317 | MGeomApply apply; // Only necessary to create geometry
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318 | if (!geom.IsNull())
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319 | apply.SetGeometry(geom);
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320 | MBadPixelsMerge merge(&badpix);
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321 |
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322 | MPedCalcFromLoGain pedlo1("MPedCalcMeanFromLoGain");
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323 | pedlo1.SetPedestalUpdate(kTRUE);
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324 | pedlo1.SetPedestalsOut(&pedcamab);
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325 |
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326 | MPedCalcFromLoGain pedlo2("MPedCalcRmsFromLoGain");
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327 | pedlo2.SetPedestalUpdate(kTRUE);
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328 | pedlo2.SetPedestalsIn(&pedcamab);
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329 |
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330 | if (extractor1)
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331 | {
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332 | // FIXME: How to get the fixed value 15 automatically?
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333 | const Float_t win = extractor1->GetNumHiGainSamples();
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334 | pedlo1.SetExtractWindow(15, (UShort_t)TMath::Nint(win));
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335 | pedlo2.SetExtractWindow(15, (UShort_t)TMath::Nint(win));
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336 |
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337 | if (extractor1->InheritsFrom("MExtractTimeAndCharge"))
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338 | {
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339 | pedlo2.SetExtractor((MExtractTimeAndCharge*)extractor1);
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340 | extractor1->SetPedestals(&pedcamab);
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341 | }
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342 | }
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343 |
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344 | MMcPedestalCopy pcopy;
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345 | MTaskEnv taskenv1("ExtractSignal");
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346 | MTaskEnv taskenv2("ExtractTime");
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347 | taskenv1.SetDefault(extractor1);
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348 | taskenv2.SetDefault(extractor2);
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349 | MCalibrateData calib;
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350 | if (filetype==3) // MC file
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351 | {
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352 | calib.SetCalibrationMode(MCalibrateData::kFfactor);
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353 | calib.SetPedestalFlag(MCalibrateData::kRun);
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354 | }
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355 | else
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356 | {
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357 | calib.SetPedestalCamMean(&pedcamab);
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358 | calib.SetPedestalFlag(MCalibrateData::kEvent);
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359 | }
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360 |
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361 | MCalibrateRelTimes caltm;
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362 | MBadPixelsCalc bpcal;
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363 | MBadPixelsTreat treat;
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364 |
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365 | MHCamEvent evt0(0, "PedFLG", "Pedestal from Lo Gain;;P [fadc/sl]");
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366 | MHCamEvent evt1(2, "PedRmsFLG", "Pedestal RMS from Lo Gain;;\\sigma_{p} [fadc/sl]");
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367 | MHCamEvent evt2(0, "Extra'd", "Extracted Signal;;S [fadc/sl]");
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368 | MHCamEvent evt3(0, "PedPhot", "Calibrated Pedestal;;P [\\gamma]");
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369 | MHCamEvent evt4(1, "PedRMS", "Calibrated Pedestal RMS;;\\sigma_{p} [\\gamma]");
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370 | MHCamEvent evt5(0, "Interp'd", "Interpolated Signal;;S [\\gamma]");
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371 | MHCamEvent evt6(2, "Unsuitable", "Unsuitable event ratio;;%");
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372 | MHCamEvent evt7(0, "Times", "Arrival Time;;T [slice]");
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373 | evt0.EnableVariance();
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374 | evt1.EnableVariance();
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375 | evt2.EnableVariance();
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376 | evt3.EnableVariance();
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377 | evt4.EnableVariance();
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378 | evt5.EnableVariance();
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379 | evt7.EnableVariance();
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380 |
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381 | MFillH fill0(&evt0, &pedcamab, "FillPedFLG");
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382 | MFillH fill1(&evt1, "MPedestalCam", "FillPedRmsFLG");
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383 | MFillH fill2(&evt2, "MExtractedSignalCam", "FillExtracted");
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384 | MFillH fill3(&evt3, "MPedPhotCam", "FillPedPhot");
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385 | MFillH fill4(&evt4, "MPedPhotCam", "FillPedRMS");
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386 | MFillH fill5(&evt5, "MCerPhotEvt", "FillInterpolated");
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387 | MFillH fill6(&evt6, "MBadPixelsCam", "FillUnsuitable");
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388 | MFillH fill7(&evt7, "MArrivalTime", "FillTimes");
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389 |
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390 | MWriteRootFile write(2, Form("%s{s/_D_/_Y_}", fPathOut.Data()), fOverwrite);
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391 | // Run Header
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392 | write.AddContainer("MRawRunHeader", "RunHeaders");
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393 | write.AddContainer("MBadPixelsCam", "RunHeaders");
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394 | write.AddContainer("MGeomCam", "RunHeaders");
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395 | // Monte Carlo Headers
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396 | write.AddContainer("MMcTrigHeader", "RunHeaders", kFALSE);
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397 | write.AddContainer("MMcConfigRunHeader", "RunHeaders", kFALSE);
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398 | write.AddContainer("MMcCorsikaRunHeader", "RunHeaders", kFALSE);
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399 | // Monte Carlo
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400 | write.AddContainer("MMcEvt", "Events", kFALSE);
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401 | write.AddContainer("MMcTrig", "Events", kFALSE);
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402 | // Data
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403 | write.AddContainer("MCerPhotEvt", "Events");
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404 | write.AddContainer("MPedPhotCam", "Events");
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405 | write.AddContainer("MTime", "Events", kFALSE);
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406 | write.AddContainer("MRawEvtHeader", "Events");
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407 | write.AddContainer("MArrivalTime", "Events");
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408 | // Slow-Control: Current
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409 | write.AddContainer("MTimeCurrents", "Currents", kFALSE);
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410 | write.AddContainer("MCameraDC", "Currents", kFALSE);
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411 | write.AddContainer("MReportCurrents", "Currents", kFALSE);
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412 | // Slow-Control: Camera
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413 | write.AddContainer("MReportCamera", "Camera", kFALSE);
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414 | write.AddContainer("MTimeCamera", "Camera", kFALSE);
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415 | write.AddContainer("MCameraAUX", "Camera", kFALSE);
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416 | write.AddContainer("MCameraCalibration", "Camera", kFALSE);
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417 | write.AddContainer("MCameraCooling", "Camera", kFALSE);
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418 | write.AddContainer("MCameraHV", "Camera", kFALSE);
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419 | write.AddContainer("MCameraLV", "Camera", kFALSE);
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420 | write.AddContainer("MCameraLids", "Camera", kFALSE);
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421 | // Slow-Control: Trigger
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422 | write.AddContainer("MReportTrigger", "Trigger", kFALSE);
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423 | write.AddContainer("MTimeTrigger", "Trigger", kFALSE);
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424 | // Slow-Control: Drive
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425 | write.AddContainer("MPointingPos", "Drive", kFALSE);
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426 | write.AddContainer("MReportDrive", "Drive", kFALSE);
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427 | write.AddContainer("MTimeDrive", "Drive", kFALSE);
|
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428 | // Slow-Control: Central Control
|
---|
429 | write.AddContainer("MReportCC", "CC", kFALSE);
|
---|
430 | write.AddContainer("MTimeCC", "CC", kFALSE);
|
---|
431 |
|
---|
432 | // Now setup tasklist for events
|
---|
433 | MTaskList tlist2;
|
---|
434 | tlist2.AddToList(&apply);
|
---|
435 | tlist2.AddToList(&merge);
|
---|
436 | if (filetype==3)
|
---|
437 | tlist2.AddToList(&pcopy);
|
---|
438 | else
|
---|
439 | {
|
---|
440 | tlist2.AddToList(&pedlo1);
|
---|
441 | tlist2.AddToList(&pedlo2);
|
---|
442 | }
|
---|
443 | tlist2.AddToList(&fill0);
|
---|
444 | tlist2.AddToList(&fill1);
|
---|
445 | if (extractor1)
|
---|
446 | tlist2.AddToList(&taskenv1);
|
---|
447 | if (extractor2)
|
---|
448 | tlist2.AddToList(&taskenv2);
|
---|
449 | tlist2.AddToList(&fill2);
|
---|
450 | tlist2.AddToList(&calib);
|
---|
451 | tlist2.AddToList(&caltm);
|
---|
452 | tlist2.AddToList(&fill3);
|
---|
453 | tlist2.AddToList(&bpcal);
|
---|
454 | tlist2.AddToList(&treat);
|
---|
455 | tlist2.AddToList(&fill4);
|
---|
456 | tlist2.AddToList(&fill5);
|
---|
457 | tlist2.AddToList(&fill6);
|
---|
458 | tlist2.AddToList(&fill7);
|
---|
459 |
|
---|
460 | // Setup List for Drive-tree
|
---|
461 | MPointingPosCalc pcalc;
|
---|
462 |
|
---|
463 | // Now setup main tasklist
|
---|
464 | tlist.AddToList(IsDataCheck() ? (MTask*)&rawread : (MTask*)&readreal);
|
---|
465 | tlist.AddToList(&tlist2, IsDataCheck()?"All":"Events");
|
---|
466 | if (!IsDataCheck())
|
---|
467 | tlist.AddToList(&pcalc, "Drive");
|
---|
468 | tlist.AddToList(&write);
|
---|
469 |
|
---|
470 | // Create and setup the eventloop
|
---|
471 | MEvtLoop evtloop(fName);
|
---|
472 | evtloop.SetParList(&plist);
|
---|
473 | evtloop.SetDisplay(fDisplay);
|
---|
474 | evtloop.SetLogStream(fLog);
|
---|
475 | if (!SetupEnv(evtloop))
|
---|
476 | return kFALSE;
|
---|
477 |
|
---|
478 | // Execute first analysis
|
---|
479 | if (!evtloop.Eventloop(fMaxEvents))
|
---|
480 | {
|
---|
481 | *fLog << err << GetDescriptor() << ": Failed." << endl;
|
---|
482 | return kFALSE;
|
---|
483 | }
|
---|
484 |
|
---|
485 | tlist.PrintStatistics();
|
---|
486 |
|
---|
487 | if (!WriteResult())
|
---|
488 | return kFALSE;
|
---|
489 |
|
---|
490 | *fLog << all << GetDescriptor() << ": Done." << endl;
|
---|
491 | *fLog << endl << endl;
|
---|
492 |
|
---|
493 | return kTRUE;
|
---|
494 | }
|
---|