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source: trunk/MagicSoft/Mars/mjobs/MJCalibrateSignal.cc@ 6949

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Last change on this file since 6949 was 6949, checked in by tbretz, 20 years ago
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1	/* ======================================================================== *\
2	!
3	! *
4	! * This file is part of MARS, the MAGIC Analysis and Reconstruction
5	! * Software. It is distributed to you in the hope that it can be a useful
6	! * and timesaving tool in analysing Data of imaging Cerenkov telescopes.
7	! * It is distributed WITHOUT ANY WARRANTY.
8	! *
9	! * Permission to use, copy, modify and distribute this software and its
10	! * documentation for any purpose is hereby granted without fee,
11	! * provided that the above copyright notice appear in all copies and
12	! * that both that copyright notice and this permission notice appear
13	! * in supporting documentation. It is provided "as is" without express
14	! * or implied warranty.
15	! *
16	!
17	!
18	! Author(s): Thomas Bretz, 1/2004 <mailto:tbretz@astro.uni-wuerzburg.de>
19	!
20	! Copyright: MAGIC Software Development, 2000-2004
21	!
22	!
23	\* ======================================================================== */
24
25	/////////////////////////////////////////////////////////////////////////////
26	//
27	// MJCalibrateSignal
28	//
29	// This class is reading the output written by callisto. It calibrates
30	// signal and time.
31	//
32	// The signal and time extractors are read from the callisto-output. In
33	// pricipal you could overwrite these default using the resource file,
34	// but this is NOT recommended!
35	//
36	/////////////////////////////////////////////////////////////////////////////
37	#include "MJCalibrateSignal.h"
38
39	#include <TEnv.h>
40	#include <TFile.h>
41
42	#include "MLog.h"
43	#include "MLogManip.h"
44
45	#include "MDirIter.h"
46	#include "MRunIter.h"
47	#include "MParList.h"
48	#include "MTaskList.h"
49	#include "MEvtLoop.h"
50
51	#include "MStatusDisplay.h"
52
53	#include "MGeomCam.h"
54	#include "MHCamEvent.h"
55	//#include "MHCamEventTH.h"
56	#include "MPedestalCam.h"
57	#include "MBadPixelsCam.h"
58	#include "MArrivalTimeCam.h"
59
60	#include "MCalibrationQECam.h"
61	#include "MCalibrationBlindCam.h"
62	#include "MCalibrationChargeCam.h"
63	#include "MCalibrationRelTimeCam.h"
64	#include "MCalibrationChargePINDiode.h"
65	#include "MCalibrationHiLoCam.h"
66	#include "MCalibrationPulseTimeCam.h"
67	#include "MCalibrationPatternDecode.h"
68
69	#include "MCalibrationChargeCalc.h"
70	#include "MCalibrationRelTimeCalc.h"
71
72	#include "MCalibrationIntensityChargeCam.h"
73	#include "MCalibrationIntensityBlindCam.h"
74	#include "MCalibrationIntensityRelTimeCam.h"
75	#include "MCalibrationIntensityQECam.h"
76	#include "MBadPixelsIntensityCam.h"
77
78	#include "MHCalibrationChargeCam.h"
79	#include "MHCalibrationChargeBlindCam.h"
80	#include "MHCalibrationChargePINDiode.h"
81	#include "MHCalibrationRelTimeCam.h"
82	#include "MHCalibrationPulseTimeCam.h"
83	#include "MHCalibrationHiLoCam.h"
84	#include "MHCamera.h"
85
86	#include "MCalibCalcFromPast.h"
87
88	#include "MReadReports.h"
89	#include "MReadMarsFile.h"
90	#include "MRawFileRead.h"
91	#include "MContinue.h"
92	#include "MTriggerPatternDecode.h"
93	#include "MFTriggerPattern.h"
94	#include "MGeomApply.h"
95	//#include "MMcPedestalCopy.h"
96	#include "MPointingPosCalc.h"
97	#include "MPointingPosInterpolate.h"
98	#include "MPedCalcFromLoGain.h"
99	#include "MExtractor.h"
100	#include "MExtractTimeAndCharge.h"
101	#include "MExtractPINDiode.h"
102	#include "MExtractBlindPixel.h"
103	#include "MFCosmics.h"
104	#include "MTaskEnv.h"
105	#include "MCalibrateData.h"
106	#include "MCalibrateRelTimes.h"
107	#include "MBadPixelsMerge.h"
108	#include "MBadPixelsCalc.h"
109	#include "MBadPixelsTreat.h"
110	#include "MFillH.h"
111	#include "MWriteRootFile.h"
112
113	ClassImp(MJCalibrateSignal);
114
115	using namespace std;
116
117	// --------------------------------------------------------------------------
118	//
119	// Default constructor.
120	//
121	// Sets:
122	// - fIsInterlaced to kTRUE
123	// - fIsRelTimesUpdate to kFALSE
124	// - fIsHiLoCalibration to kFALSE
125	// - fPulsePosCheck to kTRUE
126	//
127	MJCalibrateSignal::MJCalibrateSignal(const char name, const char title)
128	: fExtractor(0), fIsInterlaced(kTRUE), fIsRelTimesUpdate(kFALSE)
129	{
130	fName = name ? name : "MJCalibrateSignal";
131	fTitle = title ? title : "Tool to calibrate data";
132
133	SetPulsePosCheck();
134	//fCruns = NULL;
135	}
136
137	MJCalibrateSignal::~MJCalibrateSignal()
138	{
139	if (fExtractor)
140	delete fExtractor;
141	}
142
143	void MJCalibrateSignal::SetExtractor(const MExtractor *ext)
144	{
145	if (fExtractor)
146	delete fExtractor;
147
148	fExtractor = ext ? (MExtractor*)ext->Clone() : NULL;
149	}
150
151	const char* MJCalibrateSignal::GetInputFile() const
152	{
153	const TString name(GetInputFileName());
154	if (name.IsNull())
155	return "";
156
157	return Form("%s/%s", fPathIn.Data(), name.Data());
158	}
159
160	const char* MJCalibrateSignal::GetInputFileName() const
161	{
162
163	if (fSequence.IsValid())
164	return Form("calib%08d.root", fSequence.GetSequence());
165
166	// if (!fCruns)
167	return "";
168
169	// return Form("%s-F1.root", (const char*)fCruns->GetRunsAsFileName());
170	}
171
172	Bool_t MJCalibrateSignal::WriteResult(TObjArray &cont)
173	{
174	if (IsNoStorage())
175	return kTRUE;
176
177	const TString name(Form("signal%08d.root", fSequence.GetSequence()));
178	return WriteContainer(cont, name);
179	}
180
181	Bool_t MJCalibrateSignal::ReadCalibration(TObjArray &l, MBadPixelsCam &cam, MExtractor* &ext2, MExtractor* &ext3, TString &geom) const
182	{
183
184	const TString fname = GetInputFile();
185
186	*fLog << inf << "Reading from file: " << fname << endl;
187
188	TFile file(fname, "READ");
189	if (!file.IsOpen())
190	{
191	*fLog << err << dbginf << "ERROR - Could not open file " << fname << endl;
192	return kFALSE;
193	}
194
195	TObject *o = file.Get("ExtractSignal");
196	if (o && !o->InheritsFrom(MExtractor::Class()))
197	{
198	*fLog << err << dbginf << "ERROR - ExtractSignal read from " << fname << " doesn't inherit from MExtractor!" << endl;
199	return kFALSE;
200	}
201	ext3 = o ? (MExtractor*)o->Clone() : NULL;
202
203	o = file.Get("ExtractTime");
204	if (o && !o->InheritsFrom(MExtractor::Class()))
205	{
206	*fLog << err << dbginf << "ERROR - ExtractTime read from " << fname << " doesn't inherit from MExtractor!" << endl;
207	return kFALSE;
208	}
209	ext2 = o ? (MExtractor*)o->Clone() : NULL;
210	if (!ext3 && !ext2)
211	{
212	*fLog << err << dbginf << "ERROR - Neither ExtractSignal nor ExrtractTime found in " << fname << "!" << endl;
213	return kFALSE;
214	}
215
216	o = file.Get("MGeomCam");
217	if (o && !o->InheritsFrom(MGeomCam::Class()))
218	{
219	*fLog << err << dbginf << "ERROR - MGeomCam read from " << fname << " doesn't inherit from MGeomCam!" << endl;
220	return kFALSE;
221	}
222	geom = o ? o->ClassName() : "";
223
224	TObjArray cont(l);
225	cont.Add(&cam);
226	return ReadContainer(cont);
227	}
228	/*
229	Bool_t MJCalibrateSignal::ReadExtractorCosmics(MExtractor* &ext1) const
230	{
231
232	const TString fname = Form("pedy%08d.root",fSequence.GetSequence());
233
234	*fLog << inf << "Reading from file: " << fname << endl;
235
236	TFile file(fname, "READ");
237	if (!file.IsOpen())
238	{
239	*fLog << warn << "Could not find or open file " << fname << endl;
240	return kFALSE;
241	}
242
243	TObject *o = file.Get("ExtractSignal");
244	if (o && !o->InheritsFrom(MExtractor::Class()))
245	{
246	*fLog << err << dbginf << "ERROR - ExtractSignal read from " << fname << " doesn't inherit from MExtractor!" << endl;
247	return kFALSE;
248	}
249	if (o)
250	{
251	delete ext1;
252	ext1 = (MExtractor*)o->Clone();
253	}
254	else
255	*fLog << warn << "No signal extractor found in " << fname << endl;
256
257	file.Close();
258	return kTRUE;
259	}
260	*/
261	// --------------------------------------------------------------------------
262	//
263	// MJCalibration allows to setup several option by a resource file:
264	// MJCalibrateSignal.RawData: yes,no
265	//
266	// For more details see the class description and the corresponding Getters
267	//
268	Bool_t MJCalibrateSignal::CheckEnvLocal()
269	{
270	SetInterlaced(GetEnv("Interlaced", fIsInterlaced));
271	SetRelTimesUpdate(GetEnv("RelTimesUpdate", fIsRelTimesUpdate));
272
273	return MJCalib::CheckEnvLocal();
274	}
275
276	Bool_t MJCalibrateSignal::ProcessFile(MPedestalCam &pedcamab, MPedestalCam &pedcambias,
277	MPedestalCam &pedcamextr)
278	{
279	if (!fSequence.IsValid())
280	{
281	if (!fRuns)
282	{
283	*fLog << err << "ERROR - Sequence invalid and no runs chosen!" << endl;
284	return kFALSE;
285	}
286
287	if (fRuns->GetNumRuns() != fRuns->GetNumEntries())
288	{
289	*fLog << err << "Number of files found doesn't match number of runs... abort."
290	<< fRuns->GetNumRuns() << " vs. " << fRuns->GetNumEntries() << endl;
291	return kFALSE;
292	}
293	*fLog << "Calibrate data from ";
294	*fLog << "Runs " << fRuns->GetRunsAsString() << endl;
295	*fLog << endl;
296	}
297
298	//if (!CheckEnv())
299	// return kFALSE;
300
301	CheckEnv();
302
303	// --------------------------------------------------------------------------------
304
305	*fLog << inf;
306	fLog->Separator(GetDescriptor());
307	*fLog << "Calculate calibrated data from runs ";
308	*fLog << fSequence.GetName() << endl;
309	*fLog << endl;
310
311	// --------------------------------------------------------------------------------
312
313	MDirIter iter;
314	if (fSequence.IsValid())
315	{
316	const Int_t n0 = fSequence.SetupDatRuns(iter, fPathData, IsUseRawData());
317	const Int_t n1 = fSequence.GetNumDatRuns();
318	if (n0==0)
319	{
320	*fLog << err << "ERROR - No input files of sequence found!" << endl;
321	return kFALSE;
322	}
323	if (n0!=n1)
324	{
325	*fLog << err << "ERROR - Number of files found (" << n0 << ") doesn't match number of files in sequence (" << n1 << ")" << endl;
326	if (fLog->GetDebugLevel()>4)
327	{
328	*fLog << dbg << "Files which are searched:" << endl;
329	iter.Print();
330	}
331	return kFALSE;
332	}
333	}
334
335	// Read File
336	MCalibrationIntensityChargeCam ichcam;
337	MCalibrationIntensityQECam iqecam;
338	MCalibrationIntensityBlindCam iblcam;
339	MCalibrationIntensityRelTimeCam itmcam;
340	MBadPixelsIntensityCam ibdcam;
341
342	MHCalibrationChargeCam hchacam;
343	MHCalibrationChargeBlindCam hbndcam;
344	MHCalibrationChargePINDiode hpndiod;
345	MHCalibrationRelTimeCam hrelcam;
346
347	hchacam.SetOscillations(kFALSE);
348	hbndcam.SetOscillations(kFALSE);
349	hrelcam.SetOscillations(kFALSE);
350
351	MCalibrationChargeCam calcam;
352	MCalibrationQECam qecam;
353	MCalibrationBlindCam bndcam;
354	MCalibrationChargePINDiode pind;
355	MCalibrationRelTimeCam tmcam;
356	MCalibrationHiLoCam hilcam;
357	MCalibrationPulseTimeCam pulcam;
358
359	MBadPixelsCam badpix;
360
361	TObjArray interlacedcont;
362	if (fIsInterlaced)
363	{
364	interlacedcont.Add(&ichcam);
365	interlacedcont.Add(&iqecam);
366	interlacedcont.Add(&iblcam);
367	interlacedcont.Add(&itmcam);
368	interlacedcont.Add(&ibdcam);
369	interlacedcont.Add(&hchacam);
370	interlacedcont.Add(&hbndcam);
371	interlacedcont.Add(&hpndiod);
372	if (fIsRelTimesUpdate)
373	interlacedcont.Add(&hrelcam);
374	}
375
376	MExtractor *extractor1=fExtractor;
377	MExtractor *extractor2=0;
378	MExtractor *extractor3=0;
379	TString geom;
380
381	TObjArray calibcont;
382	calibcont.Add(&calcam);
383	calibcont.Add(&qecam);
384	calibcont.Add(&bndcam);
385	calibcont.Add(&pind);
386	calibcont.Add(&tmcam);
387
388	if (!ReadCalibration(calibcont, badpix, extractor2, extractor3, geom))
389	return kFALSE;
390
391	*fLog << all;
392	if (!geom.IsNull())
393	*fLog << inf << "Camera geometry found in file: " << geom << endl;
394	else
395	*fLog << inf << "No Camera geometry found using default <MGeomCamMagic>" << endl;
396
397	if (extractor3)
398	{
399	*fLog << underline << "Signal Extractor found in calibration file" << endl;
400	extractor3->Print();
401	*fLog << endl;
402	}
403	else
404	*fLog << inf << "No Signal Extractor: ExtractSignal in file." << endl;
405
406
407	if (extractor1)
408	{
409	*fLog << underline << "Modified Signal Extractor set by user." << endl;
410	extractor1->Print();
411	*fLog << endl;
412	}
413	else
414	{
415	*fLog << inf << "No modified Signal Extractor set by user... using ExtractSignal." << endl;
416	extractor1 = extractor3 ? (MExtractor*)extractor3->Clone() : 0;
417	}
418
419	if (extractor2)
420	{
421	*fLog << underline << "Time Extractor found in calibration file" << endl;
422	extractor2->Print();
423	*fLog << endl;
424	}
425	else
426	*fLog << inf << "No Time Extractor: ExtractTime in file." << endl;
427
428	// This is necessary for the case in which it is not in the files
429	MBadPixelsCam badcam;
430
431	// Setup Parlist
432	MParList plist;
433	plist.AddToList(this); // take care of fDisplay!
434	plist.AddToList(&badcam);
435	plist.AddToList(&hilcam);
436	plist.AddToList(&calibcont); // Using AddToList(TObjArray *)
437	plist.AddToList(&interlacedcont); // Using AddToList(TObjArray *)
438	plist.AddToList(&pulcam);
439
440	// Setup Tasklist
441	MTaskList tlist;
442	plist.AddToList(&tlist);
443
444	MReadReports readreal;
445	readreal.AddTree("Events", "MTime.", kTRUE);
446	readreal.AddTree("Trigger");
447	readreal.AddTree("Camera");
448	readreal.AddTree("Drive");
449	readreal.AddTree("CC");
450	readreal.AddTree("Currents");
451
452	MReadMarsFile readmc("Events");
453	readmc.DisableAutoScheme();
454
455	MRawFileRead rawread(NULL);
456
457	MRead *read = 0;
458	switch (GetDataFlag())
459	{
460	case kIsUseRawData: read = &rawread; break;
461	case kIsUseMC: read = &readmc; break;
462	case kIsUseRootData: read = &readreal; break;
463	}
464	read->AddFiles(fSequence.IsValid() ? iter : *fRuns);
465
466	const TString fname(Form("%s{s/_D_/_Y_}{s/.raw$/.root}", fPathOut.Data()));
467
468
469	// Skips MC which have no contents. This are precisely the
470	// events which fullfilled the MC Lvl1 trigger and an
471	// arbitrary cut (typically at 50phe) to speed up simulation
472	MContinue contmc("MRawEvtData.GetNumPixels<0.5", "ContEmptyMC");
473
474	MPointingPosInterpolate pextr;
475	pextr.AddFiles(&iter);
476
477	MGeomApply apply; // Only necessary to create geometry
478	if (!geom.IsNull())
479	apply.SetGeometry(geom);
480	MBadPixelsMerge merge(&badpix);
481
482	// Make sure that pedcamab has the correct name
483	pedcamab.SetName("MPedestalFundamental");
484	pedcamextr.SetName("MPedestalFromExtractorRndm");
485	pedcambias.SetName("MPedestalFromExtractor");
486	plist.AddToList(&pedcamextr);
487	plist.AddToList(&pedcambias);
488	plist.AddToList(&pedcamab);
489
490	MArrivalTimeCam timecam;
491	plist.AddToList(&timecam);
492
493	// Check for interleaved events
494	MCalibrationPatternDecode caldec;
495	MTriggerPatternDecode decode;
496
497	MFTriggerPattern ftp;
498	// ftp.RequireCalibration();
499	ftp.DenyCalibration();
500	ftp.DenyPedestal();
501	// ftp.DenyPinDiode();
502	ftp.SetInverted();
503	MContinue conttp(&ftp, "ContTrigPattern");
504	// --> tlist2
505
506	// Do signal and pedestal calculation
507	MPedCalcFromLoGain pedlo1("MPedCalcFundamental");
508	pedlo1.SetPedestalUpdate(kTRUE);
509	pedlo1.SetNamePedestalCamOut("MPedestalFundamental");
510
511	MPedCalcFromLoGain pedlo2("MPedCalcWithExtractorRndm");
512	pedlo2.SetPedestalUpdate(kTRUE);
513	pedlo2.SetRandomCalculation(kTRUE);
514	pedlo2.SetNamePedestalCamIn("MPedestalFundamental");
515	pedlo2.SetNamePedestalCamOut("MPedestalFromExtractorRndm");
516
517	MPedCalcFromLoGain pedlo3("MPedCalcWithExtractor");
518	pedlo3.SetPedestalUpdate(kTRUE);
519	pedlo3.SetRandomCalculation(kFALSE);
520	pedlo3.SetNamePedestalCamIn("MPedestalFundamental");
521	pedlo3.SetNamePedestalCamOut("MPedestalFromExtractor");
522
523	if (extractor1)
524	{
525	extractor1->SetPedestals(&pedcamab);
526
527	if (extractor1->InheritsFrom("MExtractTimeAndCharge"))
528	{
529	pedlo2.SetExtractor((MExtractTimeAndCharge*)extractor1);
530	pedlo3.SetExtractor((MExtractTimeAndCharge*)extractor1);
531	const Int_t win = ((MExtractTimeAndCharge*)extractor1)->GetWindowSizeHiGain();
532	pedlo1.SetExtractWindow(15, win);
533	pedlo2.SetExtractWindow(15, win/obsolete/);
534	pedlo3.SetExtractWindow(15, win/obsolete/);
535	}
536	else
537	{
538	// FIXME: How to get the fixed value 15 automatically?
539	const Int_t f = (Int_t)(15.5+extractor1->GetHiGainFirst());
540	const Int_t n = (Int_t)(15.5+extractor1->GetNumHiGainSamples());
541	pedlo1.SetExtractWindow(f, n);
542	pedlo2.SetExtractWindow(f, n);
543	pedlo3.SetExtractWindow(f, n);
544	}
545	}
546	if (extractor2)
547	extractor2->SetPedestals(&pedcamab);
548
549	if (extractor3)
550	extractor3->SetPedestals(&pedcamab);
551
552	MFCosmics fcosmics;
553	fcosmics.SetNamePedestalCam("MPedestalFundamental");
554	MContinue contcos(&fcosmics, "ContTrigEvts");
555	contcos.SetInverted();
556
557	//MMcPedestalCopy pcopy;
558	MTaskEnv taskenv1("ExtractSignal");
559	MTaskEnv taskenv2("ExtractTime");
560	MTaskEnv taskenv3("ExtractInterlaced");
561	taskenv1.SetDefault(extractor1);
562	taskenv2.SetDefault(extractor2);
563	taskenv3.SetDefault(extractor3);
564
565	//
566	// This is new calibration to photo-electrons, hard-coded
567	// as decided at the Wuerzburg software meeting 26.01.05
568	//
569	MCalibrateData calib;
570	calib.SetSignalType(MCalibrateData::kPhe);
571	calib.AddPedestal("Fundamental");
572	calib.AddPedestal("FromExtractor");
573	calib.AddPedestal("FromExtractorRndm");
574	calib.SetPedestalFlag(MCalibrateData::kEvent);
575	//----------------------------------------------------------
576
577	MExtractPINDiode pinext;
578	MExtractBlindPixel bldext;
579
580	MFTriggerPattern fcalib("CalibFilter");
581	fcalib.RequireCalibration();
582
583	MCalibrationChargeCalc chcalc;
584	MCalibrationRelTimeCalc recalc;
585	MCalibCalcFromPast pacalc;
586	chcalc.SetOutputFile("");
587	recalc.SetOutputFile("");
588
589	pinext.SetPedestals(&pedcamab);
590	bldext.SetPedestals(&pedcamab);
591	chcalc.SetPedestals(&pedcamextr);
592
593	pacalc.SetChargeCalc(&chcalc);
594	if (fIsRelTimesUpdate)
595	pacalc.SetRelTimeCalc(&recalc);
596	pacalc.SetCalibrate(&calib);
597
598	//
599	// Intensity Calibration histogramming
600	//
601	MFillH filpin("MHCalibrationChargePINDiode", "MExtractedSignalPINDiode", "FillPINDiode");
602	MFillH filbnd("MHCalibrationChargeBlindCam", "MExtractedSignalBlindPixel", "FillBlindCam");
603	MFillH filcam("MHCalibrationChargeCam", "MExtractedSignalCam", "FillChargeCam");
604	MFillH filtme("MHCalibrationRelTimeCam", "MArrivalTimeCam", "FillRelTime");
605	MFillH filhil("MHCalibrationHiLoCam", "MExtractedSignalCam", "FillHiLoRatio");
606	MFillH filpul("MHCalibrationPulseTimeCam", "MRawEvtData", "FillPulseTime");
607
608	filpin.SetBit(MFillH::kDoNotDisplay);
609	filbnd.SetBit(MFillH::kDoNotDisplay);
610	filcam.SetBit(MFillH::kDoNotDisplay);
611	filtme.SetBit(MFillH::kDoNotDisplay);
612	filhil.SetBit(MFillH::kDoNotDisplay);
613	filpul.SetBit(MFillH::kDoNotDisplay);
614
615	MCalibrateRelTimes caltm;
616	MBadPixelsCalc bpcal;
617	MBadPixelsTreat treat;
618
619	bpcal.SetNamePedPhotCam("MPedPhotFromExtractor");
620	treat.AddNamePedPhotCam("MPedPhotFundamental");
621	treat.AddNamePedPhotCam("MPedPhotFromExtractor");
622	treat.AddNamePedPhotCam("MPedPhotFromExtractorRndm");
623	if (!extractor2 && !extractor1->InheritsFrom("MExtractTimeAndCharge"))
624	treat.SetProcessTimes(kFALSE);
625
626	MHCamEvent evt0(0, "PedFLG", "Fundamental Pedestal from Lo Gain;;P [cnts/sl]");
627	MHCamEvent evt1(2, "PedRmsFLG", "RMS from Extractor applied to ped.;;\\sigma_{p} [cnts/sl]");
628	MHCamEvent evt2(0, "Extra'd", "Extracted Signal;;S [cnts/sl]");
629	// MHCamEvent evt3(4, "PedPhot", "Calibrated Pedestal;;P [phe]");
630	MHCamEvent evt4(5, "PedRMS", "Calibrated RMS from Extractor applied to ped.;;\\sigma_{p} [phe]");
631	MHCamEvent evt5(0, "Interp'd", "Interpolated Signal;;S [phe]");
632	MHCamEvent evt6(2, "Unsuitable", "Fraction of unsuitable events per Pixel;;[1]");
633	MHCamEvent evt7(6, "Times", "Calibrated Arrival Time;;T [fadc sl]");
634	MHCamEvent evt8(0, "Conv", "Calibration Conv. Factors;;[phe/fadc cnts]");
635	MHCamEvent evt9(7, "PulsePos", "Pulse Position of cosmics (>15phe);;T"); //Calibration Conv. Factors;;[phe/fadc cnts]
636	/*
637	MHCamEventTH evt9(6, "PulsePos", "Pulse Position of cosmics"); //Calibration Conv. Factors;;[phe/fadc cnts]
638	evt9.SetNameThreshold("MCerPhotEvt");
639	evt9.SetThreshold(15);
640	*/
641	/*
642	evt0.EnableSqrtVariance();
643	evt1.EnableSqrtVariance();
644	evt2.EnableSqrtVariance();
645	// evt3.EnableVariance();
646	evt4.EnableSqrtVariance();
647	evt5.EnableSqrtVariance();
648	evt7.EnableSqrtVariance();
649	evt8.EnableSqrtVariance();
650	*/
651	MFillH fill0(&evt0, "MPedestalFundamental", "FillPedFLG");
652	MFillH fill1(&evt1, "MPedestalFromExtractorRndm", "FillPedRmsFLG");
653	MFillH fill2(&evt2, "MExtractedSignalCam", "FillExtracted");
654	// MFillH fill3(&evt3, "MPedPhotFundamental", "FillPedPhot");
655	MFillH fill4(&evt4, "MPedPhotFromExtractorRndm", "FillPedRMS");
656	MFillH fill5(&evt5, "MSignalCam", "FillInterpolated");
657	MFillH fill6(&evt6, "MBadPixelsCam", "FillUnsuitable");
658	MFillH fill7(&evt7, "MSignalCam", "FillTimes");
659	MFillH fill8(&evt8, "MCalibConstCam", "FillConv");
660	MFillH fill9(&evt9, "MSignalCam", "FillPulse");
661
662	MTaskEnv fillflorian("FinalFantasy");
663	fillflorian.SetDefault();
664
665	// The second rule is for the case reading raw-files!
666	MWriteRootFile write(2, fname, fOverwrite?"RECREATE":"NEW");
667	// Run Header
668	write.AddContainer("MRawRunHeader", "RunHeaders");
669	write.AddContainer("MBadPixelsCam", "RunHeaders");
670	write.AddContainer("MGeomCam", "RunHeaders");
671	// Monte Carlo Headers
672	write.AddContainer("MMcRunHeader", "RunHeaders", kFALSE);
673	write.AddContainer("MMcFadcHeader", "RunHeaders", kFALSE);
674	write.AddContainer("MMcTrigHeader", "RunHeaders", kFALSE);
675	write.AddContainer("MMcConfigRunHeader", "RunHeaders", kFALSE);
676	write.AddContainer("MMcCorsikaRunHeader", "RunHeaders", kFALSE);
677	// Monte Carlo
678	write.AddContainer("MMcEvt", "Events", kFALSE);
679	write.AddContainer("MMcTrig", "Events", kFALSE);
680	// Data tree
681	write.AddContainer("MSignalCam", "Events");
682	write.AddContainer("MPedPhotFundamental", "Events");
683	write.AddContainer("MPedPhotFromExtractor", "Events");
684	write.AddContainer("MPedPhotFromExtractorRndm", "Events");
685	write.AddContainer("MTime", "Events", kFALSE);
686	write.AddContainer("MRawEvtHeader", "Events");
687	//write.AddContainer("MArrivalTime", "Events", kFALSE);
688	//write.AddContainer("MPointingPos", "Events", kFALSE);
689	// Slow-Control: Current-tree
690	write.AddContainer("MTimeCurrents", "Currents", kFALSE);
691	write.AddContainer("MCameraDC", "Currents", kFALSE);
692	write.AddContainer("MReportCurrents", "Currents", kFALSE);
693	// Slow-Control: Camera-tree
694	write.AddContainer("MReportCamera", "Camera", kFALSE);
695	write.AddContainer("MTimeCamera", "Camera", kFALSE);
696	write.AddContainer("MCameraAUX", "Camera", kFALSE);
697	write.AddContainer("MCameraCalibration", "Camera", kFALSE);
698	write.AddContainer("MCameraCooling", "Camera", kFALSE);
699	write.AddContainer("MCameraHV", "Camera", kFALSE);
700	write.AddContainer("MCameraLV", "Camera", kFALSE);
701	write.AddContainer("MCameraLids", "Camera", kFALSE);
702	// Slow-Control: Trigger-tree
703	write.AddContainer("MReportTrigger", "Trigger", kFALSE);
704	write.AddContainer("MTimeTrigger", "Trigger", kFALSE);
705	// Slow-Control: Drive-tree
706	write.AddContainer("MReportDrive", "Drive", kFALSE);
707	write.AddContainer("MTimeDrive", "Drive", kFALSE);
708	// Slow-Control: Central Control-tree
709	write.AddContainer("MReportCC", "CC", kFALSE);
710	write.AddContainer("MTimeCC", "CC", kFALSE);
711
712	// Write the special MC tree
713	MWriteRootFile writemc(2, fname, fOverwrite?"RECREATE":"NEW");
714	writemc.SetName("WriteMC");
715	writemc.AddContainer("MMcEvtBasic", "OriginalMC");
716
717	// Now setup tasklist for events
718	MTaskList tlist2;
719
720	tlist2.AddToList(&caldec);
721	tlist2.AddToList(&decode);
722	tlist2.AddToList(&apply);
723	tlist2.AddToList(&merge);
724	tlist2.AddToList(&pedlo1);
725	tlist2.AddToList(&pedlo2);
726	tlist2.AddToList(&pedlo3);
727	//-----------------------------------------------------------
728
729	MTaskList tlist3;
730	tlist3.SetFilter(&fcalib);
731
732	MContinue contcal;
733	if (fIsInterlaced)
734	{
735	tlist2.AddToList(&fcalib);
736	tlist2.AddToList(&tlist3);
737
738	tlist3.AddToList(&pinext);
739	tlist3.AddToList(&bldext);
740	tlist3.AddToList(&taskenv3);
741	tlist3.AddToList(&pacalc);
742	tlist3.AddToList(&filcam);
743	if (fIsRelTimesUpdate)
744	tlist3.AddToList(&filtme);
745	if (IsUseBlindPixel())
746	tlist3.AddToList(&filbnd);
747	if (IsUsePINDiode())
748	tlist3.AddToList(&filpin);
749	tlist3.AddToList(&chcalc);
750	if (fIsRelTimesUpdate)
751	tlist3.AddToList(&recalc);
752	tlist3.AddToList(&fill8);
753	tlist3.AddToList(&contcal);
754	}
755
756	tlist2.AddToList(&conttp);
757	if (extractor1)
758	tlist2.AddToList(&taskenv1);
759	if (extractor2)
760	tlist2.AddToList(&taskenv2);
761	tlist2.AddToList(&fill0);
762	tlist2.AddToList(&fill1);
763	tlist2.AddToList(&contcos);
764	if (fIsHiLoCalibration)
765	tlist2.AddToList(&filhil);
766	if (fIsPulsePosCheck)
767	tlist2.AddToList(&filpul);
768	tlist2.AddToList(&fill2);
769	tlist2.AddToList(&calib);
770	if (extractor2 \|\| extractor1->InheritsFrom("MExtractTimeAndCharge"))
771	tlist2.AddToList(&caltm);
772	tlist2.AddToList(&bpcal);
773	tlist2.AddToList(&treat);
774	tlist2.AddToList(&fill6);
775	// tlist2.AddToList(&fill3);
776	tlist2.AddToList(&fill4);
777	tlist2.AddToList(&fill5);
778	if (extractor2 \|\| extractor1->InheritsFrom("MExtractTimeAndCharge"))
779	tlist2.AddToList(&fill7);
780	tlist2.AddToList(&fill9);
781
782	tlist2.AddToList(&fillflorian);
783
784	// Setup List for Drive-tree
785	//MPointingPosCalc pcalc;
786
787	// Now setup main tasklist
788	tlist.AddToList(read);
789	if (IsUseMC())
790	{
791	tlist.AddToList(&writemc);
792	tlist.AddToList(&contmc);
793	}
794
795	if (IsUseRootData())
796	tlist2.AddToList(&pextr);
797	tlist.AddToList(&tlist2, IsUseRootData() ? "Events" : "All");
798
799	//if (IsUseMC())
800	// tlist.AddToList(&pcalc, "Drive");
801
802	tlist.AddToList(&write);
803
804	// Create and setup the eventloop
805	MEvtLoop evtloop(fName);
806	evtloop.SetParList(&plist);
807	evtloop.SetDisplay(fDisplay);
808	evtloop.SetLogStream(fLog);
809	if (!SetupEnv(evtloop))
810	return kFALSE;
811
812	// Execute first analysis
813	const Bool_t rc = evtloop.Eventloop(fMaxEvents);
814
815	// Print statistics
816	if (read->GetNumExecutions()>0)
817	tlist.PrintStatistics();
818
819	// make sure owned object are deleted
820	if (extractor1 && extractor1!=fExtractor)
821	delete extractor1;
822	if (extractor2)
823	delete extractor2;
824	if (extractor3)
825	delete extractor3;
826
827	// return if job failed
828	if (!rc)
829	{
830	*fLog << err << GetDescriptor() << ": Failed." << endl;
831	return kFALSE;
832	}
833
834	// if everything went ok write and display result
835	DisplayResult(plist);
836
837	if (fIsPixelCheck)
838	{
839	if (fIsPulsePosCheck)
840	{
841	MHCalibrationPulseTimeCam pcam = (MHCalibrationPulseTimeCam)plist.FindObject("MHCalibrationPulseTimeCam");
842	MHCalibrationPix &pix1 = (*pcam)[fCheckedPixId];
843	pix1.DrawClone("");
844	}
845
846	if (fIsHiLoCalibration)
847	{
848	MHCalibrationHiLoCam hcam = (MHCalibrationHiLoCam)plist.FindObject("MHCalibrationHiLoCam");
849	MHCalibrationPix &pix2 = (*hcam)[fCheckedPixId];
850	pix2.DrawClone("");
851	}
852	}
853
854	interlacedcont.Add(&pulcam);
855
856	if (fIsHiLoCalibration)
857	interlacedcont.Add(&hilcam);
858
859	if (IsHistsStorage())
860	{
861	interlacedcont.Add(plist.FindObject("MHCalibrationHiLoCam"));
862	interlacedcont.Add(plist.FindObject("MHCalibrationPulseTimeCam"));
863	}
864
865	if (!WriteResult(interlacedcont))
866	return kFALSE;
867
868	// return if job went ok
869	*fLog << all << GetDescriptor() << ": Done." << endl;
870	*fLog << endl << endl;
871
872	return kTRUE;
873	}
874
875
876	void MJCalibrateSignal::DisplayResult(MParList &plist)
877	{
878
879	if (!fDisplay)
880	return;
881
882	MGeomCam &geomcam = (MGeomCam)plist.FindObject("MGeomCam");
883	/*
884	//
885	// Get container from list
886	//
887	MCalibrationPulseTimeCam pcam = (MCalibrationPulseTimeCam)plist.FindObject("MCalibrationPulseTimeCam");
888
889	MHCamera disp11 (geomcam, "PulseTime", "Mean pulse arrival time cosmics");
890	MHCamera disp21 (geomcam, "PulseTimeRMS", "RMS of pulse arrival time cosmics");
891
892	if (pcam)
893	{
894	disp11.SetCamContent(*pcam, 0);
895	disp11.SetCamError( *pcam, 1);
896	disp21.SetCamContent(*pcam, 2);
897	disp21.SetCamError( *pcam, 3);
898	}
899
900	disp11.SetYTitle("T [FADC sl.]");
901	disp21.SetYTitle("T [FADC sl.]");
902
903	if (fIsPulsePosCheck)
904	{
905	TCanvas &c0 = fDisplay->AddTab("PulseTime");
906	c0.Divide(2,3);
907
908	disp11.CamDraw(c0, 1, 2, 1);
909	disp21.CamDraw(c0, 2, 2, 1);
910	}
911	*/
912	if (!fIsHiLoCalibration)
913	return;
914
915	MCalibrationHiLoCam hcam = (MCalibrationHiLoCam)plist.FindObject("MCalibrationHiLoCam");
916
917	// Create histograms to display
918	MHCamera disp1 (geomcam, "HiLoConv", "Ratio Amplification HiGain vs. LoGain (Charges)");
919	MHCamera disp2 (geomcam, "HiLoDiff", "Arrival Time Diff. HiGain vs. LoGain (Times)");
920
921	disp1.SetCamContent(*hcam, 0);
922	disp1.SetCamError( *hcam, 1);
923	disp2.SetCamContent(*hcam, 5);
924	disp2.SetCamError( *hcam, 6);
925
926	disp1.SetYTitle("R [1]");
927	disp2.SetYTitle("\\Delta T [FADC sl.]");
928
929
930	TCanvas &c1 = fDisplay->AddTab("HiLoConv");
931	c1.Divide(2,3);
932
933	disp1.CamDraw(c1, 1, 2, 1);
934	disp2.CamDraw(c1, 2, 2, 1);
935	}
936

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